Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47326 * 2 1 4 4 C 1.42892 * 113.99944 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.57748 * 29.84568 * 4 3 2 6 6 C 1.53104 * 109.45714 * 269.63144 * 4 3 2 7 7 O 1.42901 * 109.48580 * 297.61973 * 6 4 3 8 8 C 1.42899 * 114.09804 * 298.88096 * 7 6 4 9 9 C 1.53095 * 109.41464 * 61.16112 * 8 7 6 10 10 C 1.53177 * 109.16033 * 302.39422 * 9 8 7 11 11 H 1.08999 * 109.54127 * 297.02117 * 10 9 8 12 12 C 1.53008 * 109.54158 * 176.84732 * 10 9 8 13 13 C 1.50697 * 109.46984 * 65.17326 * 12 10 9 14 14 O 1.21284 * 120.00485 * 0.02562 * 13 12 10 15 15 N 1.34780 * 119.99814 * 179.97438 * 13 12 10 16 16 C 1.46506 * 120.00008 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47026 * 179.97438 * 16 15 13 18 18 N 1.46502 * 109.47092 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99815 * 89.99992 * 18 17 16 20 20 H 1.07993 * 120.00222 * 215.89849 * 19 18 17 21 21 C 1.38815 * 119.99781 * 35.89610 * 19 18 17 22 22 N 1.31617 * 120.00174 * 21.70097 * 21 19 18 23 23 Si 1.86796 * 119.99982 * 201.69476 * 21 19 18 24 24 H 1.48500 * 109.47397 * 89.99909 * 23 21 19 25 25 H 1.48497 * 109.47160 * 210.00509 * 23 21 19 26 26 H 1.48502 * 109.47167 * 330.00316 * 23 21 19 27 27 C 1.46497 * 119.99949 * 270.27887 * 18 17 16 28 28 C 1.53005 * 117.49684 * 194.22933 * 27 18 17 29 29 C 1.53004 * 117.49680 * 125.57064 * 27 18 17 30 30 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46646 * 299.99977 * 1 2 3 32 32 H 1.09003 * 109.46827 * 59.99936 * 1 2 3 33 33 H 1.08998 * 109.46668 * 239.99467 * 2 1 3 34 34 H 1.09003 * 109.46827 * 120.00063 * 2 1 3 35 35 H 1.08996 * 109.40927 * 177.63350 * 6 4 3 36 36 H 1.09010 * 109.48395 * 57.64904 * 6 4 3 37 37 H 1.08995 * 109.48072 * 301.17816 * 8 7 6 38 38 H 1.08997 * 109.48392 * 181.14136 * 8 7 6 39 39 H 1.08995 * 109.52555 * 182.48571 * 9 8 7 40 40 H 1.09000 * 109.52364 * 62.29626 * 9 8 7 41 41 H 1.08995 * 109.46940 * 305.17446 * 12 10 9 42 42 H 1.08995 * 109.46931 * 185.17138 * 12 10 9 43 43 H 0.96998 * 120.00051 * 0.02562 * 15 13 12 44 44 H 1.08998 * 109.47301 * 59.99528 * 16 15 13 45 45 H 1.09001 * 109.46742 * 300.00003 * 16 15 13 46 46 H 1.09005 * 109.46817 * 59.99979 * 17 16 15 47 47 H 1.08996 * 109.47539 * 300.00109 * 17 16 15 48 48 H 0.96994 * 120.00459 * 174.74520 * 22 21 19 49 49 H 1.09000 * 115.55647 * 339.89575 * 27 18 17 50 50 H 1.08998 * 117.50041 * 359.97438 * 28 27 18 51 51 H 1.08992 * 117.50237 * 145.02343 * 28 27 18 52 52 H 1.09006 * 117.49425 * 214.97652 * 29 27 18 53 53 H 1.08991 * 117.50063 * 359.97243 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8651 0.6009 -0.5120 6 6 3.9392 1.5093 1.4428 7 8 3.4162 2.6694 2.0930 8 6 3.8087 3.9035 1.4890 9 6 3.2934 3.9516 0.0482 10 6 3.8422 2.7469 -0.7224 11 1 4.9296 2.8078 -0.7680 12 6 3.2699 2.7431 -2.1414 13 6 3.7722 3.9514 -2.8889 14 8 4.5153 4.7379 -2.3409 15 7 3.3966 4.1575 -4.1668 16 6 3.8854 5.3318 -4.8937 17 6 3.3140 5.3274 -6.3129 18 7 3.8024 6.5020 -7.0396 19 6 4.9679 6.4290 -7.7547 20 1 5.6287 7.2820 -7.7988 21 6 5.3001 5.2584 -8.4228 22 7 4.3612 4.3916 -8.7383 23 14 7.0796 4.9134 -8.8742 24 1 7.7369 4.1743 -7.7666 25 1 7.1264 4.0946 -10.1121 26 1 7.7901 6.1972 -9.1026 27 6 3.0469 7.7564 -6.9963 28 6 3.4079 8.8342 -8.0206 29 6 3.7932 9.0154 -6.5502 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 5.0283 1.5529 1.4420 36 1 3.6115 0.6158 1.9744 37 1 4.8961 3.9785 1.4889 38 1 3.3869 4.7350 2.0537 39 1 3.6292 4.8725 -0.4283 40 1 2.2039 3.9174 0.0496 41 1 2.1813 2.7718 -2.0942 42 1 3.5874 1.8379 -2.6588 43 1 2.8027 3.5283 -4.6052 44 1 4.9740 5.3030 -4.9405 45 1 3.5679 6.2373 -4.3765 46 1 2.2254 5.3560 -6.2663 47 1 3.6318 4.4219 -6.8298 48 1 4.5807 3.6114 -9.2711 49 1 1.9991 7.6646 -6.7105 50 1 4.2077 8.6100 -8.7264 51 1 2.5977 9.4516 -8.4082 52 1 3.2361 9.7520 -5.9712 53 1 4.8460 8.9103 -6.2886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317555360.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -110.800920 kcal Electronic energy + Delta-G solvation = -30696.145212 eV Core-core repulsion = 26568.378265 eV Total energy + Delta-G solvation = -4127.766947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.32727 -40.19092 -38.85765 -38.08697 -36.36785 -35.23056 -34.95600 -32.72318 -32.29418 -31.03659 -30.20884 -28.74890 -26.37458 -24.81518 -24.35739 -23.59629 -23.05073 -22.95996 -21.71853 -21.40154 -20.85910 -18.50874 -17.83886 -17.63129 -17.41431 -17.32294 -16.98631 -16.72942 -16.57291 -16.26629 -16.09838 -15.76080 -15.67983 -15.18399 -14.87168 -14.69801 -14.38920 -14.03796 -13.88457 -13.72328 -13.57998 -13.21960 -13.14464 -13.06629 -12.94693 -12.74638 -12.70583 -12.39149 -12.32164 -12.18713 -12.10967 -12.05450 -11.97465 -11.81651 -11.65616 -11.40469 -11.26436 -10.97082 -10.91024 -10.73419 -10.47181 -10.03638 -9.95072 -8.50001 -7.90067 -5.47958 1.40845 1.45342 1.51806 1.71453 2.23482 2.47055 2.67559 3.05181 3.11004 3.42793 3.49187 3.66815 3.71607 3.82278 3.90543 4.14628 4.24721 4.27926 4.29190 4.34742 4.36023 4.40121 4.44279 4.47365 4.49897 4.54460 4.55068 4.58781 4.64735 4.76482 4.79436 4.82031 4.88531 4.94002 4.96507 5.01854 5.05851 5.11093 5.18446 5.22346 5.32169 5.33844 5.36219 5.50786 5.53727 5.64492 5.74718 6.16918 6.42093 6.44518 6.66536 7.10040 7.34424 7.79095 8.28524 9.07115 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.002407 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.796334 B =11631.098347 C =12043.587872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.386 6.386 4 C 0.064 3.936 5 H 0.092 0.908 6 C 0.036 3.964 7 O -0.392 6.392 8 C 0.063 3.937 9 C -0.144 4.144 10 C -0.067 4.067 11 H 0.081 0.919 12 C -0.119 4.119 13 C 0.504 3.496 14 O -0.584 6.584 15 N -0.716 5.716 16 C 0.123 3.877 17 C 0.144 3.856 18 N -0.565 5.565 19 C -0.265 4.265 20 H 0.051 0.949 21 C -0.026 4.026 22 N -0.910 5.910 23 Si 0.952 3.048 24 H -0.288 1.288 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.102 3.898 28 C -0.191 4.191 29 C -0.210 4.210 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.411 0.589 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.256 0.744 49 H 0.110 0.890 50 H 0.072 0.928 51 H 0.105 0.895 52 H 0.105 0.895 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -10.276 17.748 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.305 6.305 4 C 0.006 3.994 5 H 0.110 0.890 6 C -0.041 4.041 7 O -0.311 6.311 8 C -0.013 4.013 9 C -0.182 4.182 10 C -0.086 4.086 11 H 0.099 0.901 12 C -0.159 4.159 13 C 0.292 3.708 14 O -0.465 6.465 15 N -0.368 5.368 16 C -0.003 4.003 17 C 0.018 3.982 18 N -0.282 5.282 19 C -0.395 4.395 20 H 0.069 0.931 21 C -0.224 4.224 22 N -0.553 5.553 23 Si 0.781 3.219 24 H -0.215 1.215 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.006 4.006 28 C -0.230 4.230 29 C -0.251 4.251 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.247 0.753 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.066 0.934 49 H 0.127 0.873 50 H 0.090 0.910 51 H 0.123 0.877 52 H 0.123 0.877 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.335 -9.782 18.212 21.621 hybrid contribution 1.239 -0.329 -1.064 1.666 sum -5.096 -10.111 17.148 20.549 Atomic orbital electron populations 1.21740 0.93505 1.03028 1.02407 1.22694 0.95976 0.83289 1.00796 1.87980 1.20129 1.27384 1.95035 1.22787 0.82519 0.97971 0.96122 0.88973 1.23227 0.98476 0.89226 0.93129 1.87901 1.74613 1.14338 1.54244 1.22598 0.98901 0.86652 0.93182 1.22154 1.01045 0.98969 0.96043 1.21023 1.00213 0.94462 0.92938 0.90067 1.21619 1.03572 0.95685 0.95027 1.21365 0.79972 0.87842 0.81591 1.90629 1.38331 1.49055 1.68446 1.46008 1.50512 1.27220 1.13054 1.21746 0.97577 0.86937 0.94075 1.21001 0.95659 0.93208 0.88379 1.43424 1.24343 1.07341 1.53095 1.19026 0.96184 0.98963 1.25323 0.93101 1.25697 1.00372 0.98740 0.97594 1.69954 1.32308 1.14532 1.38535 0.85518 0.81455 0.77907 0.77069 1.21515 1.21286 1.19984 1.21434 0.94296 0.82763 1.02096 1.23084 1.03653 1.03942 0.92340 1.23325 1.00769 1.03566 0.97414 0.89484 0.92813 0.92455 0.92236 0.92705 0.91290 0.87476 0.92953 0.88376 0.91258 0.91723 0.87136 0.86890 0.75285 0.95448 0.93929 0.93492 0.90009 0.93425 0.87276 0.90982 0.87706 0.87714 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.05 0.64 6.47 71.98 0.47 1.11 16 3 O -0.39 -7.24 8.72 -141.91 -1.24 -8.48 16 4 C 0.06 1.08 2.44 30.69 0.07 1.16 16 5 H 0.09 1.14 7.79 -2.39 -0.02 1.12 16 6 C 0.04 0.61 6.48 72.02 0.47 1.08 16 7 O -0.39 -8.91 10.70 -141.91 -1.52 -10.43 16 8 C 0.06 1.38 6.84 72.01 0.49 1.88 16 9 C -0.14 -3.54 4.97 30.69 0.15 -3.38 16 10 C -0.07 -1.46 1.75 -10.67 -0.02 -1.47 16 11 H 0.08 1.90 7.96 -2.39 -0.02 1.88 16 12 C -0.12 -2.57 4.93 29.85 0.15 -2.43 16 13 C 0.50 15.72 7.57 87.66 0.66 16.38 16 14 O -0.58 -22.76 13.99 -3.04 -0.04 -22.81 16 15 N -0.72 -22.88 5.56 -463.05 -2.57 -25.46 16 16 C 0.12 5.00 6.00 86.38 0.52 5.52 16 17 C 0.14 6.30 5.45 86.38 0.47 6.77 16 18 N -0.56 -27.20 2.80 -678.03 -1.90 -29.10 16 19 C -0.26 -14.12 8.11 84.03 0.68 -13.44 16 20 H 0.05 2.80 7.11 -2.91 -0.02 2.78 16 21 C -0.03 -1.39 4.96 84.86 0.42 -0.97 16 22 N -0.91 -49.88 11.36 21.65 0.25 -49.63 16 23 Si 0.95 43.90 29.61 68.60 2.03 45.93 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.10 4.22 6.61 45.00 0.30 4.52 16 28 C -0.19 -7.39 9.80 30.62 0.30 -7.09 16 29 C -0.21 -7.85 10.07 30.62 0.31 -7.54 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.05 0.61 7.86 -2.39 -0.02 0.59 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.43 7.86 -2.38 -0.02 1.42 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 2.06 6.05 -2.39 -0.01 2.04 16 40 H 0.06 1.66 7.84 -2.39 -0.02 1.64 16 41 H 0.11 2.20 7.77 -2.39 -0.02 2.18 16 42 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.41 10.77 8.47 -92.71 -0.79 9.99 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.86 8.04 -2.38 -0.02 1.84 16 47 H 0.08 4.02 5.40 -2.39 -0.01 4.01 16 48 H 0.26 13.57 8.32 -92.71 -0.77 12.80 16 49 H 0.11 4.00 8.10 -2.39 -0.02 3.98 16 50 H 0.07 3.18 6.92 -2.39 -0.02 3.16 16 51 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 52 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 53 H 0.06 2.68 7.98 -2.39 -0.02 2.66 16 Total: -1.00 -66.54 417.92 1.29 -65.25 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.10 Total: 33.76 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.18 Total: 0.96 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -4.22 Total: -104.19 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -2.80 Total: -41.71 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.54 1.29 -65.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317555360.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.547 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds