Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46984 * 2 1 4 4 C 1.42902 * 114.00204 * 184.96133 * 3 2 1 5 5 H 1.09005 * 109.46505 * 34.15488 * 4 3 2 6 6 C 1.52992 * 109.46952 * 154.15462 * 4 3 2 7 7 C 1.53001 * 109.47233 * 294.99820 * 6 4 3 8 8 N 1.46503 * 109.46874 * 180.02562 * 7 6 4 9 9 C 1.34780 * 119.99759 * 179.97438 * 8 7 6 10 10 O 1.21345 * 120.00215 * 0.02562 * 9 8 7 11 11 C 1.49449 * 120.00059 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99754 * 354.91953 * 11 9 8 13 13 N 1.34775 * 120.00258 * 174.91929 * 11 9 8 14 14 C 1.46499 * 120.00188 * 184.54451 * 13 11 9 15 15 C 1.52998 * 109.47275 * 185.05097 * 14 13 11 16 16 C 1.50704 * 115.54492 * 55.82789 * 15 14 13 17 17 H 1.07993 * 120.00336 * 272.12519 * 16 15 14 18 18 C 1.37879 * 119.99535 * 92.13265 * 16 15 14 19 19 N 1.31515 * 120.00270 * 4.15645 * 18 16 15 20 20 Si 1.86804 * 120.00042 * 184.15763 * 18 16 15 21 21 H 1.48503 * 109.47158 * 89.99468 * 20 18 16 22 22 H 1.48489 * 109.47415 * 209.99997 * 20 18 16 23 23 H 1.48503 * 109.46697 * 329.99999 * 20 18 16 24 24 C 1.52996 * 117.50099 * 270.16306 * 15 14 13 25 25 C 1.52991 * 117.50135 * 201.49615 * 15 14 13 26 26 C 1.53000 * 109.47091 * 274.15643 * 4 3 2 27 27 C 1.52999 * 109.47054 * 174.61033 * 26 4 3 28 28 C 1.53001 * 109.47031 * 294.61466 * 26 4 3 29 29 H 1.08999 * 109.47214 * 299.99985 * 1 2 3 30 30 H 1.08998 * 109.47420 * 60.00235 * 1 2 3 31 31 H 1.09002 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47214 * 240.00015 * 2 1 3 33 33 H 1.09006 * 109.47169 * 119.99789 * 2 1 3 34 34 H 1.09010 * 109.46788 * 175.00353 * 6 4 3 35 35 H 1.09000 * 109.47594 * 55.00154 * 6 4 3 36 36 H 1.09001 * 109.47496 * 300.00270 * 7 6 4 37 37 H 1.08998 * 109.47146 * 60.00743 * 7 6 4 38 38 H 0.97003 * 120.00029 * 0.02562 * 8 7 6 39 39 H 0.97002 * 119.99693 * 4.54931 * 13 11 9 40 40 H 1.09001 * 109.47393 * 305.05640 * 14 13 11 41 41 H 1.09001 * 109.46446 * 65.05713 * 14 13 11 42 42 H 0.97005 * 119.99975 * 185.00938 * 19 18 16 43 43 H 1.08995 * 117.50077 * 359.97438 * 24 15 14 44 44 H 1.08998 * 117.49673 * 145.02127 * 24 15 14 45 45 H 1.09004 * 117.50184 * 214.98244 * 25 15 14 46 46 H 1.09000 * 117.50246 * 359.97438 * 25 15 14 47 47 H 1.09006 * 109.47164 * 54.61135 * 26 4 3 48 48 H 1.09006 * 109.47052 * 60.00033 * 27 26 4 49 49 H 1.08993 * 109.47003 * 179.97438 * 27 26 4 50 50 H 1.08996 * 109.47353 * 300.00161 * 27 26 4 51 51 H 1.09001 * 109.46959 * 303.91985 * 28 26 4 52 52 H 1.08994 * 109.47437 * 63.91845 * 28 26 4 53 53 H 1.09000 * 109.46715 * 183.92389 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4619 -0.1129 5 1 3.8061 0.6602 -0.7464 6 6 3.7810 2.8143 -0.7340 7 6 3.2550 2.8699 -2.1697 8 7 3.5952 4.1648 -2.7645 9 6 3.2308 4.4404 -4.0325 10 8 2.6204 3.6163 -4.6812 11 6 3.5773 5.7616 -4.6392 12 8 4.1046 6.6202 -3.9629 13 7 3.3042 5.9994 -5.9374 14 6 3.7329 7.2553 -6.5580 15 6 3.1931 7.3280 -7.9878 16 6 1.6997 7.1819 -8.1267 17 1 1.2600 6.2005 -8.2264 18 6 0.8946 8.3012 -8.1269 19 7 1.4347 9.4997 -8.0881 20 14 -0.9634 8.1155 -8.1821 21 1 -1.4945 8.0384 -6.7974 22 1 -1.5575 9.2863 -8.8757 23 1 -1.3150 6.8738 -8.9169 24 6 4.0664 6.7493 -9.1029 25 6 3.9052 8.2653 -8.9649 26 6 4.0584 1.3571 1.2764 27 6 5.5826 1.3447 1.1436 28 6 3.6300 2.5571 2.1235 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.8639 2.9391 -0.7387 35 1 3.3256 3.6135 -0.1490 36 1 3.7103 2.0708 -2.7547 37 1 2.1722 2.7452 -2.1650 38 1 4.0835 4.8234 -2.2461 39 1 2.8238 5.3389 -6.4608 40 1 3.3476 8.0958 -5.9809 41 1 4.8220 7.2972 -6.5783 42 1 0.8692 10.2844 -8.0148 43 1 5.0256 6.3172 -8.8180 44 1 3.5606 6.2634 -9.9373 45 1 3.2936 8.7762 -9.7087 46 1 4.7581 8.8307 -8.5892 47 1 3.7281 0.4364 1.7575 48 1 5.9129 2.2654 0.6626 49 1 6.0329 1.2705 2.1334 50 1 5.8878 0.4899 0.5402 51 1 3.8986 3.4796 1.6088 52 1 2.5512 2.5273 2.2764 53 1 4.1350 2.5193 3.0887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323538377.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -135.531473 kcal Electronic energy + Delta-G solvation = -29827.152190 eV Core-core repulsion = 25698.312846 eV Total energy + Delta-G solvation = -4128.839344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64445 -40.16527 -39.56781 -38.46018 -36.81110 -35.96120 -34.94489 -33.93598 -32.42625 -31.31646 -28.80547 -28.01766 -27.50690 -26.66045 -24.61415 -23.73840 -23.12382 -22.84659 -21.47786 -21.26768 -20.34208 -19.50589 -18.10166 -17.89368 -17.71690 -17.06538 -16.94137 -16.67804 -16.41681 -16.18189 -15.93960 -15.84010 -15.41421 -14.97073 -14.81328 -14.73557 -14.48338 -14.40047 -13.98419 -13.77212 -13.46918 -13.36586 -13.06565 -13.00520 -12.96391 -12.84624 -12.79689 -12.74374 -12.62696 -12.38764 -12.28795 -11.98292 -11.97398 -11.81657 -11.66069 -11.40289 -11.33907 -11.03097 -10.74811 -10.39942 -10.37063 -10.26109 -10.17631 -9.88204 -8.11933 -6.24823 0.38796 1.38719 1.39685 1.42821 1.50322 2.17925 2.40955 2.69578 2.79514 3.15284 3.44323 3.61263 3.64328 3.81035 4.06459 4.15732 4.18463 4.21972 4.22579 4.30164 4.41203 4.50963 4.51893 4.54767 4.62898 4.63872 4.68065 4.75074 4.79881 4.87447 4.92080 5.01133 5.01646 5.04934 5.06693 5.10561 5.11822 5.19696 5.26224 5.28385 5.31165 5.36083 5.46219 5.50104 5.55690 5.72879 5.76499 6.00945 6.35210 6.36231 6.47313 6.79137 6.82257 7.01317 7.44521 8.94516 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.002162 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.548780 B =12946.091191 C =14005.711942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.398 6.398 4 C 0.098 3.902 5 H 0.072 0.928 6 C -0.125 4.125 7 C 0.121 3.879 8 N -0.687 5.687 9 C 0.513 3.487 10 O -0.543 6.543 11 C 0.496 3.504 12 O -0.556 6.556 13 N -0.668 5.668 14 C 0.173 3.827 15 C -0.009 4.009 16 C -0.505 4.505 17 H 0.056 0.944 18 C 0.028 3.972 19 N -0.902 5.902 20 Si 0.943 3.057 21 H -0.282 1.282 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.183 4.183 25 C -0.140 4.140 26 C -0.113 4.113 27 C -0.149 4.149 28 C -0.146 4.146 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.420 0.580 39 H 0.415 0.585 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.259 0.741 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.059 0.941 52 H 0.047 0.953 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 -19.272 19.759 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.318 6.318 4 C 0.040 3.960 5 H 0.090 0.910 6 C -0.162 4.162 7 C -0.001 4.001 8 N -0.340 5.340 9 C 0.293 3.707 10 O -0.421 6.421 11 C 0.276 3.724 12 O -0.436 6.436 13 N -0.317 5.317 14 C 0.049 3.951 15 C -0.009 4.009 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.540 5.540 20 Si 0.769 3.231 21 H -0.209 1.209 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.221 4.221 25 C -0.178 4.178 26 C -0.131 4.131 27 C -0.206 4.206 28 C -0.203 4.203 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.257 0.743 39 H 0.251 0.749 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.078 0.922 52 H 0.066 0.934 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.731 -18.906 19.701 28.122 hybrid contribution -1.172 0.267 -0.180 1.215 sum 5.559 -18.640 19.521 27.557 Atomic orbital electron populations 1.21766 0.93798 1.03051 1.02327 1.22610 0.95679 0.83393 1.00678 1.87940 1.21860 1.27388 1.94645 1.22122 0.80975 0.97043 0.95907 0.91040 1.22007 1.02999 0.98373 0.92830 1.21528 1.00928 0.83401 0.94282 1.45726 1.56604 1.19480 1.12227 1.20018 0.80200 0.87019 0.83472 1.90746 1.40307 1.48883 1.62131 1.20339 0.80461 0.88363 0.83234 1.90694 1.44570 1.47085 1.61278 1.45766 1.54951 1.21098 1.09897 1.20867 0.96485 0.83916 0.93796 1.19109 0.92679 1.02346 0.86807 1.20631 0.90431 0.92493 1.50726 0.92534 1.25618 1.02028 0.95226 0.94422 1.70104 1.36215 0.97888 1.49757 0.85792 0.81637 0.77745 0.77932 1.20862 1.21069 1.19159 1.23092 1.00667 0.96094 1.02204 1.22345 1.00660 0.91501 1.03284 1.21552 0.96531 0.99652 0.95405 1.21890 0.93616 1.02589 1.02547 1.21820 1.00999 0.97863 0.99590 0.92322 0.93118 0.89500 0.92894 0.92349 0.87525 0.89868 0.90914 0.91937 0.74267 0.74870 0.94114 0.92189 0.93135 0.88913 0.90230 0.91496 0.90570 0.90879 0.91783 0.91877 0.92048 0.92169 0.93429 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.71 6.48 71.98 0.47 1.17 16 3 O -0.40 -6.88 9.16 -148.98 -1.36 -8.24 16 4 C 0.10 1.28 1.87 30.59 0.06 1.33 16 5 H 0.07 0.82 7.77 -2.38 -0.02 0.80 16 6 C -0.12 -1.72 4.23 30.59 0.13 -1.59 16 7 C 0.12 2.43 5.57 86.38 0.48 2.91 16 8 N -0.69 -16.75 5.55 -464.40 -2.58 -19.33 16 9 C 0.51 16.81 7.89 87.27 0.69 17.50 16 10 O -0.54 -20.22 16.49 -3.23 -0.05 -20.27 16 11 C 0.50 18.68 7.88 87.27 0.69 19.37 16 12 O -0.56 -22.53 16.47 -3.24 -0.05 -22.58 16 13 N -0.67 -26.91 5.35 -464.42 -2.49 -29.39 16 14 C 0.17 7.61 5.58 86.38 0.48 8.09 16 15 C -0.01 -0.41 1.69 -52.93 -0.09 -0.50 16 16 C -0.51 -26.50 8.32 25.60 0.21 -26.29 16 17 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 18 C 0.03 1.51 5.41 84.65 0.46 1.97 16 19 N -0.90 -50.75 12.05 21.45 0.26 -50.49 16 20 Si 0.94 43.51 29.54 68.60 2.03 45.54 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C -0.18 -7.40 9.93 30.62 0.30 -7.10 16 25 C -0.14 -6.34 8.91 30.62 0.27 -6.07 16 26 C -0.11 -1.21 2.85 -10.79 -0.03 -1.24 16 27 C -0.15 -1.24 8.96 71.98 0.65 -0.59 16 28 C -0.15 -1.76 8.68 71.98 0.62 -1.14 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.65 7.97 -2.39 -0.02 0.63 16 33 H 0.06 0.63 7.57 -2.38 -0.02 0.61 16 34 H 0.11 1.07 6.36 -2.38 -0.02 1.06 16 35 H 0.08 1.23 6.56 -2.39 -0.02 1.21 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.51 7.82 -2.39 -0.02 1.49 16 38 H 0.42 8.91 7.96 -92.71 -0.74 8.17 16 39 H 0.41 16.66 7.65 -92.71 -0.71 15.95 16 40 H 0.04 2.05 8.10 -2.39 -0.02 2.03 16 41 H 0.06 2.42 8.10 -2.39 -0.02 2.40 16 42 H 0.26 14.09 8.32 -92.70 -0.77 13.32 16 43 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.07 3.37 7.75 -2.38 -0.02 3.35 16 46 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.07 0.77 7.54 -2.38 -0.02 0.75 16 48 H 0.06 0.51 6.48 -2.38 -0.02 0.49 16 49 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.06 0.72 6.23 -2.39 -0.01 0.71 16 52 H 0.05 0.70 7.94 -2.39 -0.02 0.69 16 53 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -64.03 429.82 1.34 -62.69 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.54 Total: 35.54 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 6.13 Total: 6.55 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -4.80 Total: -99.21 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -1.47 Total: -51.10 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.03 1.34 -62.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323538377.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.844 kcal (2) G-P(sol) polarization free energy of solvation -64.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds