Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.47469 * 2 1 4 4 C 1.42897 * 114.00448 * 180.02562 * 3 2 1 5 5 C 1.53772 * 113.61458 * 210.00290 * 4 3 2 6 6 C 1.53777 * 87.08266 * 219.93421 * 5 4 3 7 7 C 1.52996 * 113.61831 * 139.97739 * 6 5 4 8 8 C 1.50702 * 109.47159 * 176.52888 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46931 * 120.63086 * 0.02562 * 10 8 7 12 12 C 1.53622 * 108.54424 * 126.36867 * 11 10 8 13 13 C 1.53036 * 109.24613 * 54.85288 * 12 11 10 14 14 C 1.53046 * 109.53689 * 298.51382 * 13 12 11 15 15 C 1.53002 * 109.49381 * 181.31341 * 14 13 12 16 16 O 1.42901 * 109.47171 * 65.16412 * 15 14 13 17 17 N 1.46498 * 109.52425 * 301.39399 * 14 13 12 18 18 C 1.36943 * 120.00028 * 299.85848 * 17 14 13 19 19 H 1.07992 * 119.99670 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99852 * 179.97438 * 18 17 14 21 21 N 1.31620 * 120.00021 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00145 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47217 * 89.99799 * 22 20 18 24 24 H 1.48491 * 109.47134 * 210.00105 * 22 20 18 25 25 H 1.48499 * 109.46946 * 330.00046 * 22 20 18 26 26 C 1.46925 * 120.62933 * 180.27723 * 10 8 7 27 27 C 1.53784 * 87.17242 * 25.38735 * 6 5 4 28 28 H 1.08994 * 109.46985 * 60.00078 * 1 2 3 29 29 H 1.09007 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46888 * 299.99823 * 1 2 3 31 31 H 1.09001 * 109.47345 * 240.00036 * 2 1 3 32 32 H 1.09000 * 109.47834 * 120.00090 * 2 1 3 33 33 H 1.09006 * 112.84758 * 341.19877 * 4 3 2 34 34 H 1.09000 * 113.61789 * 105.38528 * 5 4 3 35 35 H 1.09000 * 113.69011 * 334.48838 * 5 4 3 36 36 H 1.08998 * 113.61744 * 270.80049 * 6 5 4 37 37 H 1.09004 * 109.47066 * 56.53091 * 7 6 5 38 38 H 1.08994 * 109.47405 * 296.52921 * 7 6 5 39 39 H 1.09000 * 109.58052 * 246.19939 * 11 10 8 40 40 H 1.08995 * 109.58699 * 6.62138 * 11 10 8 41 41 H 1.09003 * 109.63253 * 294.86246 * 12 11 10 42 42 H 1.08996 * 109.45752 * 174.74562 * 12 11 10 43 43 H 1.08995 * 109.46232 * 178.49380 * 13 12 11 44 44 H 1.08996 * 109.44694 * 58.52287 * 13 12 11 45 45 H 1.09005 * 109.47048 * 185.16158 * 15 14 13 46 46 H 1.08995 * 109.47369 * 305.16391 * 15 14 13 47 47 H 0.96703 * 114.00047 * 179.97438 * 16 15 14 48 48 H 0.97001 * 119.99923 * 119.85192 * 17 14 13 49 49 H 0.96990 * 120.00127 * 179.97438 * 21 20 18 50 50 H 1.08994 * 109.58707 * 353.37218 * 26 10 8 51 51 H 1.09003 * 109.58629 * 113.80427 * 26 10 8 52 52 H 1.09000 * 113.61287 * 89.16363 * 27 6 5 53 53 H 1.09000 * 113.61378 * 220.06196 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9489 2.7251 0.7039 6 6 4.9910 2.8302 -0.4220 7 6 5.2337 4.2630 -0.9007 8 6 6.3263 4.2675 -1.9386 9 8 6.8583 3.2272 -2.2637 10 7 6.7082 5.4269 -2.5100 11 6 6.0690 6.6945 -2.1309 12 6 7.1642 7.6899 -1.7191 13 6 8.1843 7.8152 -2.8531 14 6 8.8397 6.4553 -3.1045 15 6 9.8827 6.5888 -4.2159 16 8 10.9427 7.4396 -3.7748 17 7 9.4903 5.9909 -1.8767 18 6 10.4885 6.7354 -1.3070 19 1 10.7963 7.6647 -1.7630 20 6 11.1045 6.2956 -0.1434 21 7 12.0642 7.0109 0.4040 22 14 10.5713 4.6885 0.6457 23 1 11.3795 3.5728 0.0914 24 1 10.7764 4.7663 2.1144 25 1 9.1342 4.4489 0.3586 26 6 7.7677 5.4466 -3.5276 27 6 4.0059 2.0446 -1.3036 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9281 0.5456 0.3228 34 1 4.3836 2.5317 1.6846 35 1 3.2319 3.5460 0.7132 36 1 5.9153 2.2915 -0.2132 37 1 5.5329 4.8828 -0.0555 38 1 4.3171 4.6606 -1.3364 39 1 5.5117 7.0907 -2.9797 40 1 5.3923 6.5263 -1.2932 41 1 7.6636 7.3331 -0.8184 42 1 6.7151 8.6638 -1.5244 43 1 8.9486 8.5409 -2.5754 44 1 7.6797 8.1483 -3.7600 45 1 10.2837 5.6046 -4.4581 46 1 9.4162 7.0192 -5.1021 47 1 11.6417 7.5693 -4.4304 48 1 9.2139 5.1561 -1.4673 49 1 12.4944 6.7038 1.2172 50 1 8.2122 4.4550 -3.6116 51 1 7.3463 5.7431 -4.4882 52 1 3.3036 2.6784 -1.8451 53 1 4.4866 1.3028 -1.9413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327580430.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -117.993706 kcal Electronic energy + Delta-G solvation = -31633.319011 eV Core-core repulsion = 27505.240162 eV Total energy + Delta-G solvation = -4128.078850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54405 -40.42806 -39.24088 -37.43297 -37.06638 -35.61597 -33.88194 -32.76337 -32.25332 -31.43080 -30.42274 -26.74905 -26.67138 -26.41958 -25.26842 -23.99284 -23.48448 -23.05322 -20.73089 -20.35454 -19.87889 -19.54816 -18.05379 -17.99021 -17.82912 -16.82837 -16.68362 -16.56761 -16.44930 -16.28613 -15.91653 -15.52674 -15.21726 -14.91976 -14.78161 -14.59793 -14.40382 -14.07711 -13.82212 -13.76416 -13.61893 -13.36653 -13.29826 -13.19683 -13.04913 -13.01916 -12.75877 -12.52661 -12.24823 -12.21728 -12.11579 -11.82202 -11.79013 -11.73070 -11.57893 -11.51030 -11.32685 -11.27126 -10.86961 -10.66576 -10.55974 -10.35610 -9.54291 -9.18107 -7.85960 -5.14798 1.29933 1.34621 1.37980 1.66048 2.05516 2.53114 2.75959 3.36344 3.39773 3.50985 3.60662 3.65072 3.77830 3.82892 3.92481 3.98212 4.13540 4.14592 4.19491 4.25395 4.34827 4.38779 4.42822 4.49379 4.53426 4.54234 4.63452 4.63580 4.67098 4.71594 4.77889 4.82675 4.86012 4.87997 4.91888 4.97240 5.00402 5.02009 5.07331 5.22280 5.26683 5.30282 5.41802 5.54767 5.59021 5.67363 6.11275 6.33594 6.44078 6.48282 7.09809 7.21731 7.29988 7.98970 8.14461 9.36279 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002949 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.274114 B = 9493.606709 C =10489.403103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.390 6.390 4 C 0.063 3.937 5 C -0.122 4.122 6 C -0.099 4.099 7 C -0.121 4.121 8 C 0.505 3.495 9 O -0.587 6.587 10 N -0.605 5.605 11 C 0.110 3.890 12 C -0.127 4.127 13 C -0.111 4.111 14 C 0.180 3.820 15 C 0.073 3.927 16 O -0.564 6.564 17 N -0.735 5.735 18 C -0.160 4.160 19 H 0.094 0.906 20 C -0.076 4.076 21 N -0.990 5.990 22 Si 0.929 3.071 23 H -0.300 1.300 24 H -0.301 1.301 25 H -0.270 1.270 26 C 0.117 3.883 27 C -0.140 4.140 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.039 0.961 42 H 0.087 0.913 43 H 0.040 0.960 44 H 0.083 0.917 45 H 0.028 0.972 46 H 0.070 0.930 47 H 0.372 0.628 48 H 0.352 0.648 49 H 0.247 0.753 50 H 0.067 0.933 51 H 0.108 0.892 52 H 0.093 0.907 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.774 -6.711 -7.193 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.310 6.310 4 C 0.006 3.994 5 C -0.160 4.160 6 C -0.118 4.118 7 C -0.160 4.160 8 C 0.295 3.705 9 O -0.468 6.468 10 N -0.337 5.337 11 C -0.011 4.011 12 C -0.166 4.166 13 C -0.150 4.150 14 C 0.089 3.911 15 C -0.007 4.007 16 O -0.369 6.369 17 N -0.376 5.376 18 C -0.291 4.291 19 H 0.112 0.888 20 C -0.265 4.265 21 N -0.645 5.645 22 Si 0.761 3.239 23 H -0.228 1.228 24 H -0.228 1.228 25 H -0.195 1.195 26 C -0.006 4.006 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.220 0.780 48 H 0.184 0.816 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.126 0.874 52 H 0.112 0.888 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.896 -6.919 -6.805 26.720 hybrid contribution 1.439 -1.379 0.405 2.033 sum -23.457 -8.297 -6.400 25.691 Atomic orbital electron populations 1.21758 0.92762 1.03291 1.02770 1.22699 0.96485 0.83325 1.00483 1.87912 1.20870 1.27548 1.94675 1.23686 0.80763 0.98304 0.96694 1.23252 0.96982 0.98095 0.97626 1.22002 0.97323 0.94860 0.97612 1.21704 0.98007 0.98761 0.97578 1.21317 0.84238 0.82702 0.82197 1.90647 1.58303 1.33141 1.64690 1.48129 1.37083 1.07931 1.40545 1.22118 0.94627 0.82010 1.02350 1.21841 0.96360 0.99740 0.98619 1.21749 0.97703 0.96749 0.98789 1.20388 0.90591 0.94145 0.85957 1.22630 0.89080 0.92826 0.96213 1.86899 1.35352 1.69797 1.44891 1.42865 1.42166 1.24660 1.27919 1.19356 1.05552 1.02536 1.01670 0.88847 1.25185 1.00451 1.00705 1.00174 1.69825 1.30476 1.40988 1.23241 0.85780 0.78087 0.82484 0.77548 1.22754 1.22840 1.19547 1.21644 0.87781 0.99313 0.91879 1.23502 0.97494 0.99839 0.96953 0.92245 0.89410 0.92096 0.93189 0.92751 0.89242 0.90441 0.87855 0.90815 0.87905 0.85631 0.88037 0.87870 0.94246 0.89406 0.94094 0.89835 0.95337 0.91242 0.78035 0.81562 0.94355 0.91406 0.87446 0.88845 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.70 6.50 71.98 0.47 1.16 16 3 O -0.39 -7.79 10.36 -148.98 -1.54 -9.33 16 4 C 0.06 1.22 4.31 31.17 0.13 1.36 16 5 C -0.12 -2.26 7.47 31.12 0.23 -2.03 16 6 C -0.10 -2.28 3.11 -10.27 -0.03 -2.31 16 7 C -0.12 -2.66 3.87 29.85 0.12 -2.54 16 8 C 0.51 15.38 7.70 87.66 0.67 16.05 16 9 O -0.59 -22.70 15.20 -3.04 -0.05 -22.74 16 10 N -0.61 -16.67 2.86 -818.13 -2.34 -19.01 16 11 C 0.11 2.27 6.37 86.51 0.55 2.82 16 12 C -0.13 -3.56 5.94 30.82 0.18 -3.37 16 13 C -0.11 -3.45 4.43 30.62 0.14 -3.32 16 14 C 0.18 6.28 0.68 3.67 0.00 6.28 16 15 C 0.07 2.37 6.09 71.98 0.44 2.80 16 16 O -0.56 -21.84 9.91 -148.98 -1.48 -23.32 16 17 N -0.73 -34.18 4.03 -303.04 -1.22 -35.40 16 18 C -0.16 -9.00 8.62 84.03 0.72 -8.27 16 19 H 0.09 5.73 5.52 -2.91 -0.02 5.71 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 21 N -0.99 -65.78 13.97 21.65 0.30 -65.48 16 22 Si 0.93 49.82 27.74 68.60 1.90 51.73 16 23 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 24 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 25 H -0.27 -13.70 6.52 99.48 0.65 -13.05 16 26 C 0.12 3.45 5.14 86.35 0.44 3.90 16 27 C -0.14 -2.98 7.48 31.18 0.23 -2.75 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.62 7.87 -2.38 -0.02 1.60 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.07 2.12 7.73 -2.39 -0.02 2.10 16 37 H 0.10 2.16 7.70 -2.38 -0.02 2.14 16 38 H 0.13 1.92 7.66 -2.39 -0.02 1.90 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.66 5.94 -2.39 -0.01 1.64 16 41 H 0.04 1.47 7.53 -2.39 -0.02 1.45 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.60 6.98 -2.39 -0.02 1.58 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.37 10.84 9.12 -74.06 -0.68 10.16 16 48 H 0.35 17.37 5.51 -92.71 -0.51 16.86 16 49 H 0.25 15.96 8.31 -92.72 -0.77 15.19 16 50 H 0.07 2.37 7.00 -2.39 -0.02 2.35 16 51 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.09 1.84 7.92 -2.39 -0.02 1.82 16 53 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -81.35 407.04 0.75 -80.60 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.34 Total: 38.39 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 5.51 Total: 4.57 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -3.26 Total: -119.89 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -3.07 Total: -55.39 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.90 Total: 51.73 kcal Total: -81.35 0.75 -80.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327580430.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.389 kcal (2) G-P(sol) polarization free energy of solvation -81.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds