Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42893 * 109.47390 * 2 1 4 4 C 1.42898 * 114.00194 * 184.68202 * 3 2 1 5 5 H 1.08997 * 109.47457 * 340.43916 * 4 3 2 6 6 C 1.50705 * 109.47101 * 220.44156 * 4 3 2 7 7 O 1.21280 * 119.99793 * 352.45867 * 6 4 3 8 8 N 1.34780 * 119.99954 * 172.46358 * 6 4 3 9 9 C 1.47481 * 125.66343 * 354.80053 * 8 6 4 10 10 C 1.55249 * 104.78044 * 155.91655 * 9 8 6 11 11 C 1.54511 * 101.43076 * 36.67706 * 10 9 8 12 12 C 1.47185 * 125.65764 * 175.11153 * 8 6 4 13 13 C 1.52517 * 110.06290 * 206.73835 * 11 10 9 14 14 N 1.47308 * 108.40848 * 287.85384 * 13 11 10 15 15 C 1.36939 * 121.06097 * 130.60770 * 14 13 11 16 16 H 1.07997 * 120.00107 * 211.10606 * 15 14 13 17 17 C 1.38810 * 119.99965 * 31.10859 * 15 14 13 18 18 N 1.31624 * 120.00301 * 8.38516 * 17 15 14 19 19 Si 1.86800 * 120.00041 * 188.38500 * 17 15 14 20 20 H 1.48510 * 109.46856 * 89.99969 * 19 17 15 21 21 H 1.48497 * 109.47360 * 209.99639 * 19 17 15 22 22 H 1.48504 * 109.47206 * 330.00313 * 19 17 15 23 23 C 1.47156 * 117.87657 * 310.62411 * 14 13 11 24 24 C 1.53290 * 108.53939 * 51.14030 * 23 14 13 25 25 O 1.42069 * 110.33840 * 83.74843 * 11 10 9 26 26 C 1.52999 * 109.47145 * 100.44371 * 4 3 2 27 27 C 1.52998 * 109.46814 * 293.74479 * 26 4 3 28 28 C 1.52994 * 109.47403 * 53.74616 * 26 4 3 29 29 H 1.08994 * 109.47318 * 60.00231 * 1 2 3 30 30 H 1.09008 * 109.47032 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47244 * 299.99837 * 1 2 3 32 32 H 1.09002 * 109.47464 * 239.99448 * 2 1 3 33 33 H 1.09005 * 109.47412 * 120.00251 * 2 1 3 34 34 H 1.08998 * 110.34928 * 274.86854 * 9 8 6 35 35 H 1.08999 * 110.34882 * 37.15927 * 9 8 6 36 36 H 1.09007 * 111.21778 * 278.58466 * 10 9 8 37 37 H 1.08999 * 110.94435 * 154.65007 * 10 9 8 38 38 H 1.09003 * 109.91302 * 300.83959 * 12 8 6 39 39 H 1.09001 * 109.91170 * 61.92375 * 12 8 6 40 40 H 1.08999 * 109.67534 * 47.58267 * 13 11 10 41 41 H 1.08996 * 109.68053 * 168.12229 * 13 11 10 42 42 H 0.97002 * 120.00119 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.62874 * 291.42657 * 23 14 13 44 44 H 1.09002 * 109.78353 * 170.94920 * 23 14 13 45 45 H 1.08995 * 109.51137 * 187.15579 * 24 23 14 46 46 H 1.09007 * 109.50980 * 67.00314 * 24 23 14 47 47 H 1.09007 * 109.47108 * 173.75035 * 26 4 3 48 48 H 1.09000 * 109.47101 * 185.92688 * 27 26 4 49 49 H 1.08998 * 109.47505 * 305.92392 * 27 26 4 50 50 H 1.08994 * 109.47253 * 65.92757 * 27 26 4 51 51 H 1.08998 * 109.47321 * 60.00313 * 28 26 4 52 52 H 1.09003 * 109.47279 * 180.02562 * 28 26 4 53 53 H 1.08996 * 109.47073 * 299.99843 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4267 1.4615 -0.1066 5 1 3.8896 0.5163 0.1771 6 6 3.9130 2.5541 0.8105 7 8 3.1146 3.2642 1.3842 8 7 5.2351 2.7420 0.9929 9 6 6.3081 1.8897 0.4476 10 6 7.5555 2.8121 0.3892 11 6 7.3710 3.6581 1.6689 12 6 5.8475 3.8284 1.7748 13 6 8.0510 5.0132 1.5029 14 7 9.5093 4.8111 1.5534 15 6 10.3306 5.3485 0.5985 16 1 11.2442 4.8418 0.3248 17 6 9.9888 6.5444 -0.0178 18 7 8.9673 7.2454 0.4267 19 14 10.9784 7.1589 -1.4781 20 1 10.3879 6.6302 -2.7340 21 1 10.9513 8.6433 -1.5050 22 1 12.3827 6.6914 -1.3563 23 6 10.0553 4.0130 2.6627 24 6 9.2853 2.6896 2.7361 25 8 7.8822 2.9637 2.7979 26 6 3.8042 1.8014 -1.5498 27 6 3.4507 0.6237 -2.4602 28 6 3.0325 3.0434 -1.9998 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 6.4910 1.0418 1.1077 35 1 6.0460 1.5435 -0.5521 36 1 7.5396 3.4412 -0.5009 37 1 8.4746 2.2280 0.4360 38 1 5.5524 4.7937 1.3635 39 1 5.5348 3.7577 2.8166 40 1 7.7738 5.4477 0.5425 41 1 7.7446 5.6790 2.3096 42 1 8.7287 8.0813 -0.0037 43 1 9.9364 4.5581 3.5991 44 1 11.1123 3.8124 2.4876 45 1 9.5887 2.1409 3.6276 46 1 9.5011 2.0932 1.8495 47 1 4.8749 1.9976 -1.6087 48 1 3.8143 0.8220 -3.4684 49 1 3.9173 -0.2841 -2.0777 50 1 2.3688 0.4941 -2.4831 51 1 3.2844 3.8825 -1.3512 52 1 3.3011 3.2853 -3.0281 53 1 1.9620 2.8472 -1.9409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330162813.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = -114.743575 kcal Electronic energy + Delta-G solvation = -32460.880207 eV Core-core repulsion = 28332.942293 eV Total energy + Delta-G solvation = -4127.937913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83070 -40.62477 -38.93475 -37.49693 -36.26467 -35.78023 -33.25629 -32.89371 -32.07831 -30.88479 -29.41537 -28.53438 -28.13314 -26.73284 -25.23773 -24.10118 -23.64464 -23.01105 -21.66840 -20.68832 -20.30469 -18.95302 -18.34577 -17.91039 -17.50286 -17.14684 -16.73930 -16.51078 -16.20718 -16.09650 -15.78878 -15.43037 -15.26785 -15.17470 -14.83411 -14.54714 -14.37432 -14.24275 -13.86489 -13.62708 -13.61415 -13.29078 -13.18485 -13.07000 -13.03448 -12.98464 -12.80580 -12.68444 -12.48871 -12.42488 -12.29291 -12.13184 -12.12524 -11.95087 -11.86886 -11.85762 -11.51145 -11.15837 -10.99339 -10.73399 -10.50406 -10.31944 -9.77367 -8.65875 -7.88714 -5.42524 1.46826 1.47275 1.48104 1.57124 1.63754 2.47365 2.75414 2.80737 3.24901 3.32368 3.49186 3.55663 3.66021 3.80374 3.89098 3.97484 4.10994 4.19998 4.23651 4.25706 4.30302 4.37942 4.38694 4.46114 4.50535 4.52576 4.56400 4.68486 4.75304 4.77843 4.79748 4.81335 4.91058 4.92351 4.99931 5.04060 5.04984 5.07656 5.13439 5.15517 5.16563 5.27281 5.28434 5.34214 5.41868 5.53376 5.62050 6.13371 6.32582 6.38582 6.46793 7.04862 7.08244 7.74960 8.32045 9.16883 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.003197 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.871242 B = 8756.302056 C = 9607.146370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.379 6.379 4 C 0.092 3.908 5 H 0.114 0.886 6 C 0.519 3.481 7 O -0.576 6.576 8 N -0.610 5.610 9 C 0.100 3.900 10 C -0.136 4.136 11 C 0.096 3.904 12 C 0.132 3.868 13 C 0.178 3.822 14 N -0.608 5.608 15 C -0.257 4.257 16 H 0.076 0.924 17 C -0.048 4.048 18 N -0.940 5.940 19 Si 0.969 3.031 20 H -0.282 1.282 21 H -0.301 1.301 22 H -0.265 1.265 23 C 0.102 3.898 24 C 0.052 3.948 25 O -0.383 6.383 26 C -0.110 4.110 27 C -0.142 4.142 28 C -0.139 4.139 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.067 0.933 41 H -0.013 1.013 42 H 0.249 0.751 43 H 0.010 0.990 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.020 0.980 52 H 0.069 0.931 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 -20.761 -5.199 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 O -0.298 6.298 4 C 0.031 3.969 5 H 0.131 0.869 6 C 0.308 3.692 7 O -0.455 6.455 8 N -0.345 5.345 9 C -0.021 4.021 10 C -0.174 4.174 11 C 0.054 3.946 12 C 0.008 3.992 13 C 0.051 3.949 14 N -0.332 5.332 15 C -0.386 4.386 16 H 0.093 0.907 17 C -0.244 4.244 18 N -0.585 5.585 19 Si 0.797 3.203 20 H -0.208 1.208 21 H -0.228 1.228 22 H -0.190 1.190 23 C -0.024 4.024 24 C -0.025 4.025 25 O -0.303 6.303 26 C -0.129 4.129 27 C -0.199 4.199 28 C -0.197 4.197 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.005 0.995 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.094 0.906 45 H 0.137 0.863 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.039 0.961 52 H 0.088 0.912 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.675 -20.160 -4.797 22.870 hybrid contribution 0.736 1.535 -0.288 1.727 sum -8.940 -18.624 -5.086 21.276 Atomic orbital electron populations 1.21752 0.93027 1.03450 1.02387 1.22984 0.96442 0.82463 1.01590 1.88028 1.18826 1.28461 1.94448 1.21943 0.83905 0.96863 0.94218 0.86855 1.21037 0.80237 0.85987 0.81914 1.90677 1.54775 1.49494 1.50509 1.48584 1.05315 1.29151 1.51489 1.22809 0.85122 0.93388 1.00776 1.23112 0.98785 0.98245 0.97213 1.22285 0.91274 0.93924 0.87125 1.21509 0.90948 0.90552 0.96204 1.20869 0.83646 0.90895 0.99460 1.44253 1.01639 1.60855 1.26482 1.19497 1.04441 1.01285 1.13420 0.90652 1.25974 0.99491 0.96020 1.02892 1.70138 1.30756 1.15035 1.42604 0.85242 0.79065 0.76549 0.79432 1.20801 1.22760 1.18976 1.21817 0.98103 0.92413 0.90021 1.23209 0.79913 0.96184 1.03159 1.87680 1.24480 1.76404 1.41697 1.21682 1.01185 0.97759 0.92271 1.21887 1.02354 0.96324 0.99354 1.21674 1.00929 0.96231 1.00820 0.92088 0.88552 0.93406 0.90341 0.92911 0.89034 0.87266 0.91009 0.88145 0.92068 0.91870 0.91482 0.99468 0.94160 0.97160 0.90552 0.86328 0.91609 0.88977 0.90943 0.90479 0.91952 0.96097 0.91155 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.04 0.66 6.05 71.98 0.44 1.10 16 3 O -0.38 -9.54 8.42 -130.05 -1.10 -10.64 16 4 C 0.09 2.11 1.70 29.85 0.05 2.16 16 5 H 0.11 1.87 7.59 -2.39 -0.02 1.85 16 6 C 0.52 17.05 6.23 87.66 0.55 17.60 16 7 O -0.58 -24.66 16.85 15.90 0.27 -24.39 16 8 N -0.61 -19.08 3.33 -811.83 -2.70 -21.78 16 9 C 0.10 2.35 6.47 86.96 0.56 2.91 16 10 C -0.14 -4.12 5.93 31.88 0.19 -3.93 16 11 C 0.10 3.59 0.83 -10.22 -0.01 3.58 16 12 C 0.13 4.96 6.24 86.47 0.54 5.50 16 13 C 0.18 8.55 3.87 86.06 0.33 8.89 16 14 N -0.61 -29.26 2.93 -698.64 -2.05 -31.31 16 15 C -0.26 -13.31 9.65 84.03 0.81 -12.50 16 16 H 0.08 3.72 7.84 -2.91 -0.02 3.70 16 17 C -0.05 -2.61 5.12 84.86 0.43 -2.18 16 18 N -0.94 -55.00 11.02 21.65 0.24 -54.76 16 19 Si 0.97 43.34 29.56 68.60 2.03 45.36 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 C 0.10 3.99 6.71 86.35 0.58 4.57 16 24 C 0.05 1.61 6.76 72.08 0.49 2.10 16 25 O -0.38 -13.76 10.22 -148.98 -1.52 -15.28 16 26 C -0.11 -2.13 2.52 -10.80 -0.03 -2.16 16 27 C -0.14 -1.75 8.01 71.98 0.58 -1.18 16 28 C -0.14 -3.37 8.81 71.98 0.63 -2.74 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.87 5.96 -2.39 -0.01 0.86 16 33 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 1.88 5.19 -2.39 -0.01 1.87 16 36 H 0.07 2.43 7.86 -2.38 -0.02 2.42 16 37 H 0.10 2.83 5.98 -2.39 -0.01 2.81 16 38 H 0.06 2.56 7.79 -2.39 -0.02 2.54 16 39 H 0.06 2.50 8.07 -2.39 -0.02 2.48 16 40 H 0.07 3.61 6.11 -2.39 -0.01 3.59 16 41 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.08 2.75 7.97 -2.39 -0.02 2.73 16 45 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.07 1.83 6.14 -2.38 -0.01 1.82 16 47 H 0.09 1.71 5.49 -2.38 -0.01 1.70 16 48 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.79 6.72 -2.39 -0.02 0.77 16 51 H 0.02 0.63 7.42 -2.39 -0.02 0.61 16 52 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 53 H 0.06 1.49 7.53 -2.39 -0.02 1.47 16 Total: -1.00 -73.38 400.35 2.93 -70.45 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.88 Total: 20.05 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 6.88 Total: 22.30 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -4.51 Total: -107.85 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -2.35 Total: -50.31 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -73.38 2.93 -70.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330162813.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.299 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds