Wall clock time and date at job start Sat Apr 11 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47434 * 2 1 4 4 C 1.42902 * 114.00334 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47053 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.49560 * 304.93093 * 5 4 3 7 7 C 1.53039 * 109.49370 * 184.83991 * 5 4 3 8 8 C 1.53047 * 109.53859 * 178.68223 * 7 5 4 9 9 C 1.52765 * 109.37967 * 61.23848 * 8 7 5 10 10 N 1.46929 * 109.00938 * 305.58910 * 9 8 7 11 11 C 1.34780 * 120.62847 * 233.59099 * 10 9 8 12 12 O 1.21349 * 119.99695 * 181.66250 * 11 10 9 13 13 C 1.49442 * 120.00131 * 1.65333 * 11 10 9 14 14 O 1.21351 * 120.00086 * 353.30346 * 13 11 10 15 15 N 1.34776 * 119.99926 * 173.02527 * 13 11 10 16 16 C 1.46507 * 120.00064 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47151 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.46887 * 300.00053 * 17 16 15 19 19 C 1.53001 * 109.47098 * 59.99793 * 17 16 15 20 20 C 1.50699 * 109.47172 * 180.02562 * 17 16 15 21 21 H 1.08005 * 119.99819 * 358.29795 * 20 17 16 22 22 C 1.37877 * 119.99878 * 178.29015 * 20 17 16 23 23 N 1.31512 * 120.00203 * 2.56778 * 22 20 17 24 24 Si 1.86802 * 119.99741 * 182.56074 * 22 20 17 25 25 H 1.48504 * 109.46791 * 95.00084 * 24 22 20 26 26 H 1.48495 * 109.47222 * 214.99696 * 24 22 20 27 27 H 1.48497 * 109.47492 * 335.00108 * 24 22 20 28 28 C 1.46920 * 118.73576 * 53.30940 * 10 9 8 29 29 H 1.09000 * 109.46851 * 300.00153 * 1 2 3 30 30 H 1.09005 * 109.46714 * 60.00086 * 1 2 3 31 31 H 1.09003 * 109.47208 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47407 * 239.99363 * 2 1 3 33 33 H 1.09005 * 109.46714 * 119.99914 * 2 1 3 34 34 H 1.09003 * 109.47060 * 59.99757 * 4 3 2 35 35 H 1.09004 * 109.46793 * 299.99891 * 4 3 2 36 36 H 1.09005 * 109.45995 * 298.70173 * 7 5 4 37 37 H 1.08997 * 109.46721 * 58.67313 * 7 5 4 38 38 H 1.09001 * 109.49796 * 181.31470 * 8 7 5 39 39 H 1.09003 * 109.49675 * 301.38207 * 8 7 5 40 40 H 1.09002 * 109.50536 * 185.70567 * 9 8 7 41 41 H 1.08995 * 109.43501 * 65.42667 * 9 8 7 42 42 H 0.97002 * 120.00051 * 0.02562 * 15 13 11 43 43 H 1.08998 * 109.46969 * 300.00548 * 16 15 13 44 44 H 1.08994 * 109.46787 * 60.00140 * 16 15 13 45 45 H 1.09004 * 109.47028 * 54.97281 * 18 17 16 46 46 H 1.09004 * 109.46908 * 174.96501 * 18 17 16 47 47 H 1.08996 * 109.47256 * 294.97143 * 18 17 16 48 48 H 1.09002 * 109.46524 * 60.00265 * 19 17 16 49 49 H 1.08997 * 109.46793 * 179.97438 * 19 17 16 50 50 H 1.08993 * 109.47477 * 300.00288 * 19 17 16 51 51 H 0.96994 * 120.00070 * 179.97438 * 23 22 20 52 52 H 1.08994 * 109.58648 * 66.43576 * 28 10 9 53 53 H 1.09003 * 109.58524 * 186.71274 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8254 2.9383 -0.0001 6 1 3.3512 3.4409 -0.8430 7 6 5.3461 3.0610 -0.1212 8 6 5.7392 4.5398 -0.1551 9 6 5.3016 5.2105 1.1458 10 7 3.8660 4.9718 1.3480 11 6 3.0220 6.0010 1.5604 12 8 1.8434 5.7886 1.7560 13 6 3.5377 7.4036 1.5552 14 8 4.7311 7.6110 1.4815 15 7 2.6771 8.4383 1.6267 16 6 3.1827 9.8133 1.6221 17 6 2.0076 10.7891 1.7121 18 6 1.0803 10.5826 0.5127 19 6 1.2318 10.5352 3.0062 20 6 2.5276 12.2035 1.7068 21 1 3.5913 12.3876 1.6731 22 6 1.6455 13.2624 1.7448 23 7 0.3528 13.0385 1.8366 24 14 2.2865 15.0153 1.6660 25 1 2.2482 15.4936 0.2606 26 1 1.4359 15.8918 2.5105 27 1 3.6849 15.0539 2.1640 28 6 3.3671 3.5905 1.3080 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.8341 0.9763 -0.8892 35 1 3.8333 0.9766 0.8909 36 1 5.8186 2.5792 0.7348 37 1 5.6777 2.5763 -1.0394 38 1 6.8202 4.6264 -0.2648 39 1 5.2477 5.0277 -0.9969 40 1 5.4886 6.2826 1.0833 41 1 5.8632 4.7875 1.9787 42 1 1.7229 8.2726 1.6819 43 1 3.8430 9.9605 2.4767 44 1 3.7357 9.9940 0.7004 45 1 0.7751 9.5373 0.4652 46 1 0.1985 11.2139 0.6224 47 1 1.6067 10.8495 -0.4037 48 1 1.8925 10.6823 3.8606 49 1 0.3950 11.2306 3.0705 50 1 0.8557 9.5122 3.0096 51 1 -0.2677 13.7835 1.8637 52 1 3.7677 3.0327 2.1544 53 1 2.2781 3.5938 1.3551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348805052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:44 Heat of formation + Delta-G solvation = -132.980829 kcal Electronic energy + Delta-G solvation = -30713.341095 eV Core-core repulsion = 26584.612354 eV Total energy + Delta-G solvation = -4128.728740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.08443 -40.22225 -39.25698 -38.44959 -38.06433 -35.27980 -34.34212 -32.90508 -32.75892 -31.55527 -28.43920 -27.59952 -27.39700 -26.88449 -26.47894 -24.02671 -23.62845 -23.13645 -21.65727 -20.87000 -20.49613 -18.83129 -18.12476 -17.76987 -17.55581 -17.24633 -17.06287 -16.75780 -16.63135 -15.93920 -15.79521 -15.72205 -15.31106 -14.99657 -14.80271 -14.70389 -14.48529 -14.22129 -14.06615 -13.96398 -13.77937 -13.28456 -13.23262 -13.17325 -13.10251 -12.71235 -12.61224 -12.56734 -12.36381 -12.27798 -12.12689 -12.07428 -11.95993 -11.84334 -11.65824 -11.51829 -11.50985 -11.23783 -10.72319 -10.52709 -10.42058 -10.19779 -10.03404 -9.80676 -8.01302 -6.17236 0.30905 1.28521 1.44649 1.47956 1.56248 2.09241 2.43067 2.54711 2.71842 3.22987 3.28283 3.71699 3.82620 3.87698 4.08989 4.18197 4.23399 4.28000 4.33764 4.44362 4.47696 4.50620 4.51937 4.60082 4.63329 4.66821 4.67492 4.82839 4.83176 4.87070 4.97785 4.98553 5.02981 5.03402 5.07746 5.10894 5.16116 5.16566 5.27275 5.30278 5.40640 5.41911 5.60275 5.64127 5.68425 5.97348 6.09354 6.18138 6.26046 6.32006 6.40530 6.70406 6.86691 6.94998 7.50598 8.98545 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.002210 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.310544 B =12666.457506 C =13700.422014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.053 3.947 3 O -0.417 6.417 4 C 0.071 3.929 5 C -0.095 4.095 6 H 0.062 0.938 7 C -0.107 4.107 8 C -0.127 4.127 9 C 0.040 3.960 10 N -0.574 5.574 11 C 0.505 3.495 12 O -0.550 6.550 13 C 0.502 3.498 14 O -0.529 6.529 15 N -0.679 5.679 16 C 0.143 3.857 17 C 0.049 3.951 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.523 4.523 21 H 0.054 0.946 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.949 3.051 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.271 1.271 28 C 0.114 3.886 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.412 0.588 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.061 0.939 47 H 0.024 0.976 48 H 0.024 0.976 49 H 0.062 0.938 50 H 0.027 0.973 51 H 0.259 0.741 52 H 0.087 0.913 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.422 -26.997 -3.997 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 O -0.338 6.338 4 C -0.005 4.005 5 C -0.114 4.114 6 H 0.081 0.919 7 C -0.145 4.145 8 C -0.165 4.165 9 C -0.080 4.080 10 N -0.306 5.306 11 C 0.287 3.713 12 O -0.429 6.429 13 C 0.284 3.716 14 O -0.409 6.409 15 N -0.329 5.329 16 C 0.020 3.980 17 C 0.048 3.952 18 C -0.180 4.180 19 C -0.182 4.182 20 C -0.562 4.562 21 H 0.072 0.928 22 C -0.175 4.175 23 N -0.541 5.541 24 Si 0.776 3.224 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.196 1.196 28 C -0.007 4.007 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.159 0.841 41 H 0.100 0.900 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.081 0.919 50 H 0.046 0.954 51 H 0.069 0.931 52 H 0.106 0.894 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.337 -26.685 -3.922 28.231 hybrid contribution -0.413 0.979 0.033 1.063 sum 7.923 -25.707 -3.889 27.180 Atomic orbital electron populations 1.21789 0.93819 1.03216 1.02286 1.22612 0.95750 0.82881 1.01084 1.87917 1.22162 1.28066 1.95635 1.22549 0.80822 0.95225 1.01950 1.21473 0.97785 0.95090 0.97041 0.91921 1.21535 0.92312 0.96507 1.04110 1.21801 1.02707 0.95590 0.96443 1.23336 0.77541 1.08343 0.98804 1.48113 1.09590 1.05883 1.66991 1.20099 0.85992 0.86583 0.78626 1.90739 1.17050 1.85404 1.49676 1.20260 0.86524 0.86639 0.78175 1.90269 1.15241 1.84402 1.51038 1.46142 1.11194 1.06262 1.69350 1.21583 0.97627 0.78066 1.00688 1.18397 0.91072 0.92542 0.93143 1.21697 1.01170 0.97832 0.97314 1.21712 1.00911 0.98251 0.97279 1.21232 0.92926 0.90932 1.51108 0.92809 1.25526 0.95130 1.02167 0.94707 1.69946 1.01984 1.31726 1.50416 0.85679 0.78323 0.80660 0.77735 1.20596 1.21250 1.19585 1.21823 1.00520 0.79771 0.98616 0.92936 0.92793 0.89032 0.92194 0.92247 0.91199 0.91430 0.89742 0.89518 0.88144 0.92979 0.84144 0.89968 0.75037 0.92390 0.92262 0.95361 0.91988 0.95637 0.95655 0.91884 0.95401 0.93112 0.89439 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.42 -8.06 9.99 -148.98 -1.49 -9.55 16 4 C 0.07 0.97 5.32 71.98 0.38 1.35 16 5 C -0.09 -1.60 2.58 -10.72 -0.03 -1.62 16 6 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.11 -1.28 5.17 30.62 0.16 -1.12 16 8 C -0.13 -2.02 6.07 30.53 0.19 -1.83 16 9 C 0.04 0.85 6.20 86.22 0.53 1.39 16 10 N -0.57 -14.91 2.98 -821.34 -2.45 -17.36 16 11 C 0.50 16.61 7.76 87.27 0.68 17.29 16 12 O -0.55 -20.71 15.91 -3.25 -0.05 -20.76 16 13 C 0.50 17.60 7.80 87.27 0.68 18.28 16 14 O -0.53 -18.91 13.02 -3.25 -0.04 -18.95 16 15 N -0.68 -25.19 4.91 -464.41 -2.28 -27.46 16 16 C 0.14 5.89 4.50 86.38 0.39 6.28 16 17 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 18 C -0.12 -5.63 8.05 71.98 0.58 -5.05 16 19 C -0.12 -5.71 8.10 71.98 0.58 -5.13 16 20 C -0.52 -27.15 8.01 25.60 0.21 -26.94 16 21 H 0.05 2.78 7.75 -2.91 -0.02 2.76 16 22 C 0.02 1.28 5.14 84.66 0.44 1.72 16 23 N -0.90 -48.74 9.42 21.45 0.20 -48.54 16 24 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C 0.11 2.51 5.55 86.36 0.48 2.99 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.14 3.80 3.78 -82.56 -0.31 3.48 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.41 15.29 5.65 -92.71 -0.52 14.76 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.03 1.15 6.73 -2.39 -0.02 1.13 16 46 H 0.06 3.15 6.19 -2.38 -0.01 3.14 16 47 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 3.23 6.11 -2.39 -0.01 3.21 16 50 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 51 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 52 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.07 2.08 6.86 -2.39 -0.02 2.06 16 Total: -1.00 -61.33 409.56 2.44 -58.89 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.06 Total: 29.66 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 6.46 Total: 9.73 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -4.52 Total: -93.36 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -1.58 Total: -49.26 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -61.33 2.44 -58.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348805052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.090 kcal (2) G-P(sol) polarization free energy of solvation -61.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds