Wall clock time and date at job start Sat Apr 11 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42891 * 109.47114 * 2 1 4 4 C 1.42901 * 114.00296 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.64076 * 29.29718 * 4 3 2 6 6 C 1.54322 * 110.71944 * 266.15692 * 4 3 2 7 7 N 1.47018 * 107.27336 * 219.26540 * 6 4 3 8 8 C 1.34778 * 125.65052 * 178.98072 * 7 6 4 9 9 O 1.21284 * 120.00097 * 179.97438 * 8 7 6 10 10 C 1.50702 * 119.99810 * 359.96739 * 8 7 6 11 11 C 1.52998 * 109.46950 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.48111 * 55.00477 * 11 10 8 13 13 C 1.53097 * 109.48026 * 175.02489 * 11 10 8 14 14 C 1.53173 * 109.16296 * 177.59371 * 13 11 10 15 15 C 1.53180 * 109.03722 * 303.01654 * 14 13 11 16 16 C 1.53093 * 109.16043 * 56.98297 * 15 14 13 17 17 O 1.42902 * 109.48213 * 294.98137 * 11 10 8 18 18 C 1.47426 * 108.70104 * 358.94171 * 7 6 4 19 19 C 1.54909 * 104.83381 * 24.12870 * 18 7 6 20 20 H 1.08997 * 111.00194 * 81.06198 * 19 18 7 21 21 C 1.53003 * 111.00221 * 204.91626 * 19 18 7 22 22 N 1.46497 * 109.47096 * 287.19549 * 21 19 18 23 23 C 1.36936 * 119.99774 * 180.02562 * 22 21 19 24 24 H 1.08004 * 120.00133 * 0.02562 * 23 22 21 25 25 C 1.38809 * 120.00262 * 179.97438 * 23 22 21 26 26 N 1.31627 * 119.99893 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00631 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46896 * 89.99500 * 27 25 23 29 29 H 1.48494 * 109.47470 * 210.00351 * 27 25 23 30 30 H 1.48501 * 109.46815 * 330.00288 * 27 25 23 31 31 H 1.09008 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46932 * 299.99354 * 1 2 3 33 33 H 1.09001 * 109.47295 * 60.00393 * 1 2 3 34 34 H 1.09007 * 109.46621 * 240.00026 * 2 1 3 35 35 H 1.08992 * 109.47380 * 120.00241 * 2 1 3 36 36 H 1.08998 * 109.88021 * 338.68244 * 6 4 3 37 37 H 1.09005 * 109.88017 * 99.68933 * 6 4 3 38 38 H 1.09003 * 109.47500 * 300.00492 * 10 8 7 39 39 H 1.09001 * 109.46727 * 60.00775 * 10 8 7 40 40 H 1.08998 * 109.51977 * 297.49850 * 13 11 10 41 41 H 1.08998 * 109.52112 * 57.62329 * 13 11 10 42 42 H 1.08994 * 109.54676 * 62.88476 * 14 13 11 43 43 H 1.09005 * 109.54319 * 183.06808 * 14 13 11 44 44 H 1.08994 * 109.52601 * 176.88590 * 15 14 13 45 45 H 1.08994 * 109.52449 * 297.01972 * 15 14 13 46 46 H 1.08997 * 109.48352 * 62.37465 * 16 15 14 47 47 H 1.09006 * 109.48322 * 182.39641 * 16 15 14 48 48 H 1.08998 * 110.36876 * 142.97187 * 18 7 6 49 49 H 1.09003 * 110.36123 * 265.28869 * 18 7 6 50 50 H 1.08999 * 109.46712 * 47.20043 * 21 19 18 51 51 H 1.08996 * 109.46823 * 167.19175 * 21 19 18 52 52 H 0.96998 * 120.00120 * 359.97438 * 22 21 19 53 53 H 0.96991 * 120.00013 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8840 0.6037 -0.5001 6 6 3.9681 1.5995 1.4394 7 7 5.0653 2.5773 1.4032 8 6 5.7840 2.9913 2.4656 9 8 6.6706 3.8056 2.3180 10 6 5.4857 2.4425 3.8371 11 6 6.4373 3.0721 4.8564 12 1 6.3656 4.1582 4.7980 13 6 6.0549 2.6102 6.2650 14 6 7.0480 3.1962 7.2732 15 6 8.4661 2.7661 6.8854 16 6 8.7554 3.2219 5.4528 17 8 7.7775 2.6669 4.5708 18 6 5.2499 3.0294 0.0122 19 6 3.8800 2.7864 -0.6689 20 1 3.1829 3.5932 -0.4432 21 6 4.0424 2.6114 -2.1802 22 7 4.3496 3.9068 -2.7916 23 6 4.5383 3.9977 -4.1448 24 1 4.4601 3.1144 -4.7615 25 6 4.8289 5.2251 -4.7242 26 7 4.9236 6.3016 -3.9728 27 14 5.0869 5.3491 -6.5701 28 1 3.7873 5.6231 -7.2343 29 1 6.0357 6.4528 -6.8644 30 1 5.6428 4.0696 -7.0792 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.1758 1.9555 2.0978 37 1 4.3380 0.6366 1.7918 38 1 4.4564 2.6788 4.1071 39 1 5.6211 1.3609 3.8329 40 1 5.0488 2.9567 6.5013 41 1 6.0858 1.5217 6.3124 42 1 6.9809 4.2840 7.2612 43 1 6.8141 2.8275 8.2720 44 1 9.1844 3.2239 7.5653 45 1 8.5471 1.6809 6.9466 46 1 8.7143 4.3099 5.4023 47 1 9.7475 2.8814 5.1563 48 1 5.5028 4.0894 -0.0118 49 1 6.0267 2.4421 -0.4776 50 1 4.8554 1.9133 -2.3798 51 1 3.1165 2.2208 -2.6023 52 1 4.4187 4.7002 -2.2379 53 1 5.1263 7.1594 -4.3777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479533220.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:54 Heat of formation + Delta-G solvation = -149.487061 kcal Electronic energy + Delta-G solvation = -30567.579483 eV Core-core repulsion = 26438.134979 eV Total energy + Delta-G solvation = -4129.444504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43459 -40.35360 -39.32532 -37.67425 -36.43322 -34.51039 -34.15442 -33.63458 -32.40148 -31.29233 -29.46834 -29.30232 -27.06694 -25.51604 -24.90556 -23.85238 -23.46857 -22.97613 -21.54669 -21.16278 -20.30021 -19.17044 -18.39656 -17.83703 -17.48634 -17.06365 -16.78163 -16.60728 -16.34620 -16.23639 -15.71184 -15.51113 -15.32508 -15.28991 -15.06709 -14.82923 -14.46482 -14.18772 -13.98028 -13.82539 -13.58136 -13.43474 -13.26350 -13.17393 -13.09365 -12.91834 -12.82846 -12.65750 -12.44488 -12.21021 -12.18051 -12.15662 -11.96833 -11.93913 -11.77025 -11.64425 -11.59603 -11.27161 -10.98795 -10.89789 -10.46665 -10.30856 -9.71135 -9.02798 -7.95697 -5.25784 1.45923 1.48688 1.57004 1.63935 1.85492 2.53802 2.69220 2.84645 3.26984 3.38251 3.43217 3.67480 3.73820 3.92379 3.95294 3.98080 4.02103 4.12151 4.17317 4.21801 4.28705 4.30385 4.32945 4.42929 4.47586 4.49198 4.54680 4.60197 4.63677 4.71284 4.72156 4.75990 4.78940 4.81576 4.90790 4.96188 4.98363 5.07732 5.08976 5.13395 5.14022 5.17563 5.20069 5.24025 5.37026 5.40729 5.47958 6.25245 6.31463 6.34467 6.50524 7.15713 7.31319 8.05773 8.28765 9.28062 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.002684 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.048108 B =10429.437951 C =12981.231710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.389 6.389 4 C 0.096 3.904 5 H 0.098 0.902 6 C 0.084 3.916 7 N -0.618 5.618 8 C 0.519 3.481 9 O -0.581 6.581 10 C -0.119 4.119 11 C 0.099 3.901 12 H 0.040 0.960 13 C -0.142 4.142 14 C -0.125 4.125 15 C -0.150 4.150 16 C 0.054 3.946 17 O -0.397 6.397 18 C 0.123 3.877 19 C -0.092 4.092 20 H 0.075 0.925 21 C 0.168 3.832 22 N -0.746 5.746 23 C -0.245 4.245 24 H 0.080 0.920 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.977 3.023 28 H -0.285 1.285 29 H -0.297 1.297 30 H -0.267 1.267 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.037 0.963 47 H 0.093 0.907 48 H 0.047 0.953 49 H 0.065 0.935 50 H 0.029 0.971 51 H 0.029 0.971 52 H 0.372 0.628 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -17.419 25.290 30.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.308 6.308 4 C 0.037 3.963 5 H 0.116 0.884 6 C -0.038 4.038 7 N -0.353 5.353 8 C 0.310 3.690 9 O -0.460 6.460 10 C -0.158 4.158 11 C 0.041 3.959 12 H 0.058 0.942 13 C -0.180 4.180 14 C -0.162 4.162 15 C -0.188 4.188 16 C -0.022 4.022 17 O -0.316 6.316 18 C 0.000 4.000 19 C -0.112 4.112 20 H 0.093 0.907 21 C 0.042 3.958 22 N -0.389 5.389 23 C -0.376 4.376 24 H 0.097 0.903 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.805 3.195 28 H -0.212 1.212 29 H -0.224 1.224 30 H -0.191 1.191 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.056 0.944 47 H 0.111 0.889 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.047 0.953 51 H 0.047 0.953 52 H 0.203 0.797 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.080 -17.038 24.968 30.384 hybrid contribution 0.548 1.200 -1.119 1.730 sum -2.532 -15.838 23.850 28.741 Atomic orbital electron populations 1.21772 0.93244 1.03332 1.02457 1.22810 0.96148 0.82537 1.01505 1.87985 1.19412 1.28547 1.94814 1.22947 0.82070 0.97148 0.94143 0.88424 1.22691 0.89433 0.93404 0.98269 1.48535 1.35722 1.44019 1.07053 1.21118 0.80236 0.80903 0.86792 1.90722 1.33213 1.35893 1.86207 1.21816 1.01980 1.03682 0.88318 1.21906 0.82289 0.97405 0.94316 0.94198 1.22184 1.00670 1.02437 0.92683 1.21623 0.94190 1.00696 0.99690 1.22160 0.98208 1.02381 0.96006 1.22656 0.92195 0.97151 0.90222 1.87933 1.16173 1.71531 1.55998 1.21984 0.96941 0.99538 0.81541 1.22446 0.95353 0.98619 0.94773 0.90655 1.20684 0.97494 0.87829 0.89814 1.42584 1.85439 1.05879 1.04974 1.19651 1.38761 0.94075 0.85129 0.90253 1.25644 1.03454 0.95436 1.02569 1.69844 1.57430 0.99041 1.35944 0.85091 0.77231 0.77276 0.79872 1.21209 1.22378 1.19142 0.88930 0.91900 0.93370 0.92831 0.90778 0.88734 0.87549 0.84414 0.85793 0.88845 0.89818 0.92293 0.89447 0.89608 0.90719 0.94431 0.88871 0.93464 0.91653 0.95305 0.95338 0.79677 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 71.98 0.74 -1.44 16 2 C 0.05 0.73 6.51 71.98 0.47 1.20 16 3 O -0.39 -9.19 10.08 -148.98 -1.50 -10.69 16 4 C 0.10 2.25 2.89 31.78 0.09 2.34 16 5 H 0.10 1.97 7.75 -2.39 -0.02 1.95 16 6 C 0.08 1.61 6.26 86.73 0.54 2.15 16 7 N -0.62 -17.46 3.33 -811.79 -2.70 -20.16 16 8 C 0.52 15.67 7.73 87.66 0.68 16.35 16 9 O -0.58 -23.98 15.68 10.73 0.17 -23.81 16 10 C -0.12 -2.19 4.60 29.85 0.14 -2.06 16 11 C 0.10 2.07 2.19 30.63 0.07 2.14 16 12 H 0.04 1.02 7.96 -2.39 -0.02 1.00 16 13 C -0.14 -1.79 5.42 30.68 0.17 -1.63 16 14 C -0.12 -1.51 6.03 30.71 0.19 -1.33 16 15 C -0.15 -2.05 6.14 30.69 0.19 -1.86 16 16 C 0.05 1.12 6.84 72.01 0.49 1.61 16 17 O -0.40 -10.43 9.64 -135.21 -1.30 -11.74 16 18 C 0.12 4.37 6.32 86.85 0.55 4.92 16 19 C -0.09 -3.10 2.78 -9.40 -0.03 -3.12 16 20 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 21 C 0.17 6.83 5.72 86.38 0.49 7.33 16 22 N -0.75 -39.56 5.55 -343.46 -1.91 -41.46 16 23 C -0.24 -14.07 9.99 84.03 0.84 -13.23 16 24 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 25 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 26 N -0.97 -62.17 13.06 21.65 0.28 -61.89 16 27 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 28 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 29 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 30 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 31 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 0.83 8.11 -2.38 -0.02 0.81 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 1.53 8.06 -2.39 -0.02 1.51 16 37 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16 49 H 0.07 2.37 7.91 -2.39 -0.02 2.35 16 50 H 0.03 1.14 7.96 -2.39 -0.02 1.12 16 51 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 52 H 0.37 21.35 7.67 -92.71 -0.71 20.64 16 53 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -80.59 421.39 1.30 -79.29 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.15 Total: 31.80 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.08 Total: 9.11 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -4.32 Total: -123.51 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.64 Total: -46.25 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -80.59 1.30 -79.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479533220.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.196 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds