Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47569 * 2 1 4 4 C 1.42894 * 114.00075 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.65853 * 26.80278 * 4 3 2 6 6 C 1.54941 * 110.73867 * 263.41318 * 4 3 2 7 7 N 1.48377 * 103.37625 * 204.38915 * 6 4 3 8 8 C 1.34786 * 127.17223 * 219.23552 * 7 6 4 9 9 O 1.21277 * 119.99813 * 179.80071 * 8 7 6 10 10 C 1.50696 * 119.99877 * 359.79560 * 8 7 6 11 11 H 1.09005 * 108.94254 * 61.23702 * 10 8 7 12 12 C 1.46283 * 108.96153 * 179.97438 * 10 8 7 13 13 C 1.54204 * 112.07657 * 181.55735 * 12 10 8 14 14 C 1.50408 * 108.77168 * 282.19323 * 13 12 10 15 15 O 1.44193 * 112.77168 * 92.57669 * 14 13 12 16 16 C 1.44186 * 116.92675 * 318.47484 * 15 14 13 17 17 C 1.50412 * 112.78050 * 318.47764 * 16 15 14 18 18 C 1.47485 * 105.79701 * 39.06652 * 7 6 4 19 19 C 1.54005 * 107.24392 * 334.78511 * 18 7 6 20 20 H 1.08993 * 110.32614 * 120.10270 * 19 18 7 21 21 C 1.53007 * 110.32382 * 242.21213 * 19 18 7 22 22 N 1.46501 * 109.47256 * 293.54693 * 21 19 18 23 23 C 1.36935 * 119.99918 * 180.02562 * 22 21 19 24 24 H 1.07998 * 119.99831 * 0.02562 * 23 22 21 25 25 C 1.38808 * 119.99628 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99663 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00451 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47182 * 89.99611 * 27 25 23 29 29 H 1.48501 * 109.47146 * 210.00041 * 27 25 23 30 30 H 1.48506 * 109.46792 * 329.99957 * 27 25 23 31 31 H 1.08995 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47132 * 300.01006 * 1 2 3 33 33 H 1.09001 * 109.46390 * 60.00097 * 1 2 3 34 34 H 1.09002 * 109.47461 * 239.99172 * 2 1 3 35 35 H 1.09008 * 109.47026 * 119.99904 * 2 1 3 36 36 H 1.09005 * 110.66544 * 322.73272 * 6 4 3 37 37 H 1.09006 * 110.66339 * 85.68094 * 6 4 3 38 38 H 1.08995 * 108.96635 * 302.23125 * 12 10 8 39 39 H 1.09009 * 108.95840 * 60.98401 * 12 10 8 40 40 H 1.09007 * 109.58034 * 41.98135 * 13 12 10 41 41 H 1.09003 * 109.58682 * 162.26126 * 13 12 10 42 42 H 1.09004 * 108.82523 * 213.42245 * 14 13 12 43 43 H 1.08993 * 108.82356 * 331.83264 * 14 13 12 44 44 H 1.08997 * 108.82100 * 79.33196 * 16 15 14 45 45 H 1.09010 * 108.81924 * 197.73844 * 16 15 14 46 46 H 1.09005 * 109.58663 * 332.78320 * 17 16 15 47 47 H 1.09002 * 109.58748 * 212.36819 * 17 16 15 48 48 H 1.09002 * 109.91598 * 215.32597 * 18 7 6 49 49 H 1.08999 * 109.91369 * 94.23678 * 18 7 6 50 50 H 1.09006 * 109.46814 * 53.54773 * 21 19 18 51 51 H 1.09000 * 109.46968 * 173.54218 * 21 19 18 52 52 H 0.97000 * 119.99484 * 359.97438 * 22 21 19 53 53 H 0.97000 * 120.00513 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8863 0.5828 -0.4590 6 6 3.9642 1.6692 1.4402 7 7 5.2657 2.3495 1.2287 8 6 6.4117 2.1443 1.9079 9 8 7.4073 2.7750 1.6218 10 6 6.4559 1.1313 3.0226 11 1 6.2235 0.1471 2.6157 12 6 7.8048 1.1050 3.5879 13 6 7.9411 0.0605 4.7141 14 6 7.3219 0.6162 5.9671 15 8 5.9359 0.2470 6.1158 16 6 5.1174 0.2917 4.9296 17 6 5.3929 1.4998 4.0771 18 6 5.0486 3.2952 0.1180 19 6 3.8783 2.7514 -0.7224 20 1 3.0623 3.4736 -0.7472 21 6 4.3476 2.4323 -2.1433 22 7 4.7182 3.6745 -2.8258 23 6 5.1707 3.6372 -4.1177 24 1 5.2539 2.6921 -4.6336 25 6 5.5213 4.8143 -4.7645 26 7 5.9557 4.7785 -6.0064 27 14 5.3766 6.4491 -3.8724 28 1 6.6522 6.7456 -3.1724 29 1 5.0891 7.5252 -4.8546 30 1 4.2733 6.3760 -2.8811 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8898 33 1 -0.3632 0.5138 -0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 1.8934 -0.5139 0.8901 36 1 3.2887 2.3057 2.0119 37 1 4.1043 0.7114 1.9415 38 1 8.5159 0.8676 2.7967 39 1 8.0394 2.0905 3.9904 40 1 7.4253 -0.8559 4.4268 41 1 8.9956 -0.1531 4.8887 42 1 7.8785 0.2466 6.8283 43 1 7.3940 1.7034 5.9427 44 1 5.3045 -0.6053 4.3394 45 1 4.0686 0.3044 5.2264 46 1 5.7647 2.3114 4.7027 47 1 4.4755 1.8116 3.5778 48 1 5.9474 3.3603 -0.4953 49 1 4.7964 4.2796 0.5124 50 1 5.2120 1.7696 -2.1002 51 1 3.5419 1.9433 -2.6909 52 1 4.6423 4.5235 -2.3627 53 1 6.2011 5.6009 -6.4584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479534634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -134.899120 kcal Electronic energy + Delta-G solvation = -31507.586280 eV Core-core repulsion = 27378.774357 eV Total energy + Delta-G solvation = -4128.811923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.89536 -40.33102 -39.27242 -37.83000 -36.61639 -35.73117 -34.15660 -33.34817 -32.51721 -31.40232 -29.46104 -28.87219 -27.62732 -26.27415 -25.08984 -23.81263 -23.21011 -22.36553 -21.58147 -21.33832 -20.44120 -19.74718 -18.46169 -18.10639 -17.58276 -17.51603 -16.80818 -16.62545 -16.37291 -16.19058 -15.95990 -15.72986 -15.34076 -15.10676 -14.81890 -14.74572 -14.54987 -14.33364 -14.26930 -14.15774 -13.73108 -13.52742 -13.42211 -13.26031 -13.18723 -12.92846 -12.80303 -12.46227 -12.40618 -12.32981 -12.27507 -12.12930 -11.95991 -11.92099 -11.81653 -11.76960 -11.61206 -11.41576 -11.06011 -10.86195 -10.51951 -10.41608 -9.81906 -9.36909 -8.07739 -5.41863 1.33144 1.37654 1.43691 1.47622 1.72216 2.43750 2.63779 2.88819 3.17540 3.24025 3.40564 3.48513 3.56877 3.67725 3.75651 3.83881 3.93160 4.05159 4.14493 4.16728 4.21210 4.28014 4.32766 4.38425 4.42002 4.48959 4.56393 4.57269 4.60951 4.67140 4.68570 4.72247 4.76577 4.82521 4.85353 4.89758 4.95397 5.01808 5.04061 5.10662 5.12397 5.13165 5.20245 5.22623 5.33123 5.37256 5.69381 6.15810 6.28297 6.31887 6.41626 7.01361 7.02184 7.76780 7.95763 9.13760 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.003246 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.374031 B = 8623.028015 C =10687.984855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.384 6.384 4 C 0.092 3.908 5 H 0.086 0.914 6 C 0.086 3.914 7 N -0.614 5.614 8 C 0.526 3.474 9 O -0.587 6.587 10 C -0.089 4.089 11 H 0.121 0.879 12 C -0.110 4.110 13 C -0.141 4.141 14 C 0.059 3.941 15 O -0.412 6.412 16 C 0.064 3.936 17 C -0.147 4.147 18 C 0.111 3.889 19 C -0.100 4.100 20 H 0.099 0.901 21 C 0.169 3.831 22 N -0.757 5.757 23 C -0.236 4.236 24 H 0.057 0.943 25 C -0.061 4.061 26 N -0.982 5.982 27 Si 0.951 3.049 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.248 1.248 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.019 0.981 51 H 0.031 0.969 52 H 0.366 0.634 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -14.727 28.401 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.303 6.303 4 C 0.033 3.967 5 H 0.103 0.897 6 C -0.036 4.036 7 N -0.349 5.349 8 C 0.317 3.683 9 O -0.467 6.467 10 C -0.110 4.110 11 H 0.138 0.862 12 C -0.148 4.148 13 C -0.178 4.178 14 C -0.016 4.016 15 O -0.333 6.333 16 C -0.012 4.012 17 C -0.184 4.184 18 C -0.013 4.013 19 C -0.120 4.120 20 H 0.117 0.883 21 C 0.042 3.958 22 N -0.403 5.403 23 C -0.367 4.367 24 H 0.075 0.925 25 C -0.253 4.253 26 N -0.633 5.633 27 Si 0.778 3.222 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.173 1.173 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.072 0.928 49 H 0.090 0.910 50 H 0.037 0.963 51 H 0.049 0.951 52 H 0.199 0.801 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.328 -14.421 28.276 32.575 hybrid contribution 0.734 1.435 -1.017 1.906 sum -6.593 -12.986 27.259 30.905 Atomic orbital electron populations 1.21763 0.93051 1.03319 1.02624 1.22805 0.96248 0.82587 1.01339 1.87949 1.19143 1.28370 1.94829 1.22987 0.82066 0.97017 0.94666 0.89653 1.23298 0.83285 0.99875 0.97173 1.48787 1.10869 1.40794 1.34401 1.21171 0.80516 0.83683 0.82971 1.90722 1.35344 1.51462 1.69128 1.20468 0.98652 0.98473 0.93357 0.86160 1.20492 0.95277 1.00083 0.98959 1.21865 1.03264 0.98561 0.94161 1.22404 0.81568 0.98939 0.98739 1.88241 1.21002 1.89741 1.34295 1.22410 0.95741 0.96359 0.86704 1.22133 0.99083 1.00193 0.97011 1.21984 0.98051 0.93196 0.88043 1.22282 0.97183 0.99004 0.93514 0.88284 1.20761 0.96486 0.87946 0.90571 1.42691 1.80330 1.04896 1.12341 1.19010 1.34521 0.94027 0.89165 0.92508 1.25493 1.01535 1.01407 0.96864 1.69874 1.52317 1.27999 1.13065 0.85467 0.78709 0.79790 0.78250 1.20913 1.21729 1.17255 0.89182 0.91550 0.93282 0.93382 0.90683 0.88044 0.86221 0.92353 0.92670 0.89638 0.88849 0.88230 0.93742 0.91434 0.87347 0.91184 0.88069 0.92764 0.90975 0.96256 0.95147 0.80085 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.05 0.65 6.49 71.98 0.47 1.11 16 3 O -0.38 -7.69 10.08 -148.98 -1.50 -9.20 16 4 C 0.09 1.88 3.11 31.81 0.10 1.97 16 5 H 0.09 1.68 7.55 -2.39 -0.02 1.66 16 6 C 0.09 1.30 4.81 86.68 0.42 1.72 16 7 N -0.61 -14.63 3.26 -808.70 -2.64 -17.27 16 8 C 0.53 13.83 7.23 87.65 0.63 14.46 16 9 O -0.59 -21.75 16.14 -3.02 -0.05 -21.80 16 10 C -0.09 -1.45 1.45 -13.20 -0.02 -1.47 16 11 H 0.12 1.41 7.37 -2.38 -0.02 1.39 16 12 C -0.11 -1.95 3.89 28.93 0.11 -1.84 16 13 C -0.14 -1.66 5.61 30.16 0.17 -1.49 16 14 C 0.06 0.75 6.27 71.14 0.45 1.20 16 15 O -0.41 -6.14 10.88 -148.98 -1.62 -7.76 16 16 C 0.06 0.62 6.26 71.15 0.45 1.07 16 17 C -0.15 -1.78 4.50 30.16 0.14 -1.64 16 18 C 0.11 3.32 6.30 86.53 0.55 3.87 16 19 C -0.10 -2.86 2.83 -9.90 -0.03 -2.89 16 20 H 0.10 2.86 8.07 -2.39 -0.02 2.84 16 21 C 0.17 6.44 5.35 86.38 0.46 6.90 16 22 N -0.76 -36.38 5.13 -343.44 -1.76 -38.14 16 23 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 24 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 25 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 26 N -0.98 -64.49 13.97 21.65 0.30 -64.19 16 27 Si 0.95 46.96 27.74 68.60 1.90 48.87 16 28 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 30 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.71 8.11 -2.39 -0.02 0.69 16 35 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.10 1.31 7.75 -2.38 -0.02 1.30 16 37 H 0.12 0.99 6.72 -2.38 -0.02 0.97 16 38 H 0.06 1.24 7.93 -2.39 -0.02 1.22 16 39 H 0.05 1.16 7.46 -2.38 -0.02 1.15 16 40 H 0.09 0.86 7.15 -2.38 -0.02 0.84 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.04 0.63 6.66 -2.39 -0.02 0.61 16 44 H 0.07 0.48 6.67 -2.39 -0.02 0.46 16 45 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.07 1.07 7.15 -2.38 -0.02 1.05 16 47 H 0.10 1.00 4.96 -2.39 -0.01 0.99 16 48 H 0.05 2.08 7.48 -2.39 -0.02 2.06 16 49 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 51 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.37 16.83 5.37 -92.71 -0.50 16.33 16 53 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -80.06 402.49 0.94 -79.12 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.33 Total: 24.81 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.97 Total: 5.56 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -4.10 Total: -119.61 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -3.17 Total: -38.75 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.90 Total: 48.87 kcal Total: -80.06 0.94 -79.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479534634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.779 kcal (2) G-P(sol) polarization free energy of solvation -80.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds