Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47172 * 2 1 4 4 C 1.42900 * 114.00055 * 175.85302 * 3 2 1 5 5 C 1.52999 * 109.47229 * 184.15873 * 4 3 2 6 6 C 1.50698 * 115.56457 * 39.73242 * 5 4 3 7 7 O 1.21283 * 120.00025 * 259.72625 * 6 5 4 8 8 N 1.34776 * 120.00099 * 79.72585 * 6 5 4 9 9 C 1.48115 * 127.03657 * 184.96629 * 8 6 5 10 10 C 1.54593 * 103.42413 * 219.28659 * 9 8 6 11 11 H 1.09000 * 110.57814 * 81.16461 * 10 9 8 12 12 C 1.52999 * 110.83597 * 204.44831 * 10 9 8 13 13 N 1.46503 * 109.46678 * 288.56045 * 12 10 9 14 14 C 1.36941 * 119.99915 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99852 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99758 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00400 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47528 * 89.99732 * 18 16 14 20 20 H 1.48501 * 109.46994 * 209.99983 * 18 16 14 21 21 H 1.48504 * 109.46874 * 329.99805 * 18 16 14 22 22 C 1.54625 * 102.91051 * 322.86577 * 10 9 8 23 23 H 1.08997 * 110.32749 * 262.80512 * 22 10 9 24 24 O 1.42905 * 110.32455 * 140.58961 * 22 10 9 25 25 C 1.42903 * 113.99705 * 155.71270 * 24 22 10 26 26 C 1.52997 * 109.47001 * 184.14658 * 25 24 22 27 27 C 1.47490 * 127.03298 * 5.28055 * 8 6 5 28 28 C 1.53003 * 117.50007 * 185.42469 * 5 4 3 29 29 C 1.52995 * 60.03388 * 107.49941 * 28 5 4 30 30 H 1.09003 * 109.47320 * 184.65048 * 1 2 3 31 31 H 1.09001 * 109.46986 * 304.64263 * 1 2 3 32 32 H 1.08998 * 109.47582 * 64.64123 * 1 2 3 33 33 H 1.09005 * 109.46731 * 239.99598 * 2 1 3 34 34 H 1.08998 * 109.47071 * 120.00262 * 2 1 3 35 35 H 1.08994 * 109.47231 * 64.15774 * 4 3 2 36 36 H 1.09003 * 109.47062 * 304.15553 * 4 3 2 37 37 H 1.09001 * 110.65660 * 337.76852 * 9 8 6 38 38 H 1.08996 * 110.65899 * 100.88299 * 9 8 6 39 39 H 1.09000 * 109.47170 * 48.55867 * 12 10 9 40 40 H 1.08998 * 109.47450 * 168.56150 * 12 10 9 41 41 H 0.96997 * 120.00021 * 0.02562 * 13 12 10 42 42 H 0.96999 * 119.99595 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.47293 * 304.14955 * 25 24 22 44 44 H 1.09001 * 109.46722 * 64.14645 * 25 24 22 45 45 H 1.08998 * 109.47307 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.46910 * 299.99959 * 26 25 24 47 47 H 1.09002 * 109.47405 * 59.99843 * 26 25 24 48 48 H 1.09003 * 109.91429 * 273.88398 * 27 8 6 49 49 H 1.08999 * 109.90965 * 34.96134 * 27 8 6 50 50 H 1.09000 * 117.49349 * 359.97438 * 28 5 4 51 51 H 1.08996 * 117.50161 * 215.00253 * 28 5 4 52 52 H 1.08995 * 117.50156 * 107.47750 * 29 28 5 53 53 H 1.09002 * 117.50223 * 252.47683 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4276 1.4612 0.0944 5 6 3.8156 2.9380 0.1901 6 6 2.9172 3.7922 1.0469 7 8 2.0736 4.4935 0.5297 8 7 3.0511 3.7769 2.3879 9 6 2.1938 4.4686 3.3781 10 6 3.2026 4.9756 4.4341 11 1 3.6737 5.9003 4.1010 12 6 2.5197 5.1712 5.7892 13 7 1.6355 6.3377 5.7265 14 6 0.9134 6.7096 6.8290 15 1 0.9961 6.1433 7.7448 16 6 0.0753 7.8145 6.7694 17 7 -0.0250 8.5051 5.6533 18 14 -0.9091 8.3223 8.2735 19 1 -0.1150 9.2794 9.0850 20 1 -2.1739 8.9697 7.8419 21 1 -1.2211 7.1214 9.0894 22 6 4.2367 3.8281 4.5029 23 1 4.0135 3.1668 5.3401 24 8 5.5583 4.3577 4.6259 25 6 6.4909 3.4586 5.2293 26 6 7.8380 4.1625 5.4039 27 6 4.0851 3.0730 3.1694 28 6 5.3070 3.2794 0.1712 29 6 4.4369 3.5877 -1.0489 30 1 -0.3634 -1.0243 0.0833 31 1 -0.3633 0.5842 0.8455 32 1 -0.3634 0.4401 -0.9286 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8870 1.0215 -0.7908 36 1 3.7760 0.9357 0.9836 37 1 1.6698 5.3049 2.9153 38 1 1.4867 3.7718 3.8280 39 1 1.9345 4.2844 6.0326 40 1 3.2761 5.3296 6.5579 41 1 1.5610 6.8461 4.9038 42 1 -0.6110 9.2769 5.6117 43 1 6.1155 3.1456 6.2036 44 1 6.6177 2.5843 4.5909 45 1 8.5495 3.4766 5.8637 46 1 8.2134 4.4754 4.4295 47 1 7.7112 5.0368 6.0422 48 1 3.7729 2.0457 3.3578 49 1 5.0299 3.0798 2.6259 50 1 6.0116 2.4517 0.0910 51 1 5.6383 4.1214 0.7788 52 1 4.1955 4.6325 -1.2438 53 1 4.5694 2.9632 -1.9324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479536303.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -110.337997 kcal Electronic energy + Delta-G solvation = -31272.196525 eV Core-core repulsion = 27144.449651 eV Total energy + Delta-G solvation = -4127.746873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60137 -40.03721 -38.87921 -37.76721 -37.30190 -36.40773 -33.88978 -32.38439 -32.25593 -31.20689 -29.40962 -28.21778 -27.27060 -25.60900 -23.97215 -23.78568 -23.49594 -23.40947 -22.70065 -21.44348 -19.96791 -19.11319 -18.31690 -18.00483 -17.45951 -17.17878 -16.86311 -16.78171 -16.58404 -16.26026 -15.69442 -15.67648 -15.41364 -15.08343 -14.90766 -14.59032 -14.41701 -14.39274 -14.04131 -13.67056 -13.54774 -13.38713 -13.26105 -13.12904 -12.94829 -12.84550 -12.67542 -12.58215 -12.43384 -12.39803 -12.28151 -12.17430 -12.12974 -11.95449 -11.78195 -11.61767 -11.61698 -11.25826 -10.97240 -10.83031 -10.55081 -10.47879 -9.74141 -9.02998 -7.95214 -5.25832 1.46142 1.49060 1.54928 1.57446 1.79566 2.39532 2.53480 2.69416 2.85617 3.25367 3.38709 3.45849 3.65285 3.67717 3.83764 3.96636 3.98978 4.02393 4.14925 4.21468 4.26233 4.27915 4.30992 4.41761 4.43801 4.47965 4.48466 4.55259 4.58929 4.61443 4.64850 4.66598 4.71685 4.77232 4.81727 4.83976 4.91683 4.94435 4.99667 5.06324 5.12583 5.13666 5.15993 5.22865 5.24388 5.36599 5.48307 6.25105 6.28697 6.34424 6.51211 7.11206 7.31133 8.05549 8.28440 9.28594 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.003276 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.085094 B = 8546.093383 C =10447.670999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.419 6.419 4 C 0.110 3.890 5 C -0.171 4.171 6 C 0.569 3.431 7 O -0.590 6.590 8 N -0.614 5.614 9 C 0.120 3.880 10 C -0.092 4.092 11 H 0.066 0.934 12 C 0.168 3.832 13 N -0.747 5.747 14 C -0.245 4.245 15 H 0.082 0.918 16 C -0.079 4.079 17 N -0.973 5.973 18 Si 0.977 3.023 19 H -0.286 1.286 20 H -0.298 1.298 21 H -0.265 1.265 22 C 0.095 3.905 23 H 0.104 0.896 24 O -0.395 6.395 25 C 0.046 3.954 26 C -0.151 4.151 27 C 0.083 3.917 28 C -0.126 4.126 29 C -0.149 4.149 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.370 0.630 42 H 0.250 0.750 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.148 0.852 51 H 0.094 0.906 52 H 0.076 0.924 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.803 -24.542 -9.567 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.340 6.340 4 C 0.034 3.966 5 C -0.174 4.174 6 C 0.359 3.641 7 O -0.470 6.470 8 N -0.347 5.347 9 C -0.002 4.002 10 C -0.112 4.112 11 H 0.084 0.916 12 C 0.042 3.958 13 N -0.390 5.390 14 C -0.377 4.377 15 H 0.100 0.900 16 C -0.271 4.271 17 N -0.624 5.624 18 Si 0.806 3.194 19 H -0.213 1.213 20 H -0.225 1.225 21 H -0.189 1.189 22 C 0.036 3.964 23 H 0.122 0.878 24 O -0.314 6.314 25 C -0.030 4.030 26 C -0.208 4.208 27 C -0.039 4.039 28 C -0.162 4.162 29 C -0.186 4.186 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.202 0.798 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.117 0.883 49 H 0.123 0.877 50 H 0.166 0.834 51 H 0.113 0.887 52 H 0.095 0.905 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.237 -23.885 -9.823 31.050 hybrid contribution -1.197 1.071 0.494 1.680 sum 16.039 -22.814 -9.329 29.407 Atomic orbital electron populations 1.21787 0.94308 1.03159 1.01872 1.22631 0.95456 0.82548 1.01500 1.88018 1.22240 1.28428 1.95290 1.21997 0.81446 0.90496 1.02662 1.21357 0.96783 0.96071 1.03185 1.19720 0.83172 0.80757 0.80472 1.90680 1.38822 1.44242 1.73222 1.48725 1.30959 1.50471 1.04512 1.22216 0.93335 0.96375 0.88323 1.22258 0.94889 0.98872 0.95172 0.91594 1.20747 0.91738 0.89673 0.93672 1.42607 1.51317 1.32288 1.12766 1.19673 1.17305 1.08440 0.92250 0.90019 1.25654 1.02364 0.98857 1.00187 1.69859 1.43262 1.21415 1.27827 0.85085 0.77454 0.78216 0.78672 1.21307 1.22457 1.18913 1.22905 0.82505 0.93791 0.97235 0.87842 1.88017 1.18649 1.42850 1.81921 1.22806 0.89638 0.93049 0.97528 1.21773 0.95192 1.01371 1.02496 1.22897 0.92616 0.96363 0.92019 1.23278 0.88905 1.04449 0.99612 1.23199 1.00985 1.01615 0.92797 0.88559 0.93958 0.92923 0.91401 0.91875 0.89422 0.90474 0.93450 0.90288 0.94650 0.95302 0.79829 0.94098 0.92512 0.90807 0.88815 0.92134 0.93485 0.88302 0.87748 0.83408 0.88714 0.90528 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 2 C 0.05 0.90 6.66 71.98 0.48 1.38 16 3 O -0.42 -10.35 9.72 -148.98 -1.45 -11.80 16 4 C 0.11 1.86 6.01 71.98 0.43 2.30 16 5 C -0.17 -3.76 1.73 -52.90 -0.09 -3.86 16 6 C 0.57 19.30 6.45 87.66 0.57 19.87 16 7 O -0.59 -26.97 17.19 -3.04 -0.05 -27.02 16 8 N -0.61 -18.85 3.29 -810.10 -2.67 -21.52 16 9 C 0.12 4.43 6.46 86.61 0.56 4.99 16 10 C -0.09 -3.19 2.80 -9.70 -0.03 -3.21 16 11 H 0.07 2.67 8.08 -2.39 -0.02 2.65 16 12 C 0.17 6.78 5.58 86.38 0.48 7.26 16 13 N -0.75 -39.78 5.52 -343.45 -1.90 -41.67 16 14 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 15 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 16 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 17 N -0.97 -62.75 13.06 21.65 0.28 -62.47 16 18 Si 0.98 47.48 29.55 68.60 2.03 49.50 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 21 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.09 2.27 3.03 31.48 0.10 2.36 16 23 H 0.10 2.02 7.53 -2.39 -0.02 2.00 16 24 O -0.39 -9.59 9.94 -148.98 -1.48 -11.07 16 25 C 0.05 0.71 6.55 71.98 0.47 1.18 16 26 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 27 C 0.08 1.71 6.49 86.53 0.56 2.27 16 28 C -0.13 -1.79 8.42 30.59 0.26 -1.54 16 29 C -0.15 -2.84 9.80 30.62 0.30 -2.54 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 35 H 0.09 0.96 7.95 -2.39 -0.02 0.94 16 36 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 37 H 0.05 2.16 7.81 -2.39 -0.02 2.14 16 38 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 39 H 0.04 1.35 7.99 -2.39 -0.02 1.33 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.37 21.63 7.67 -92.71 -0.71 20.92 16 42 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.06 0.82 8.02 -2.39 -0.02 0.80 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 47 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.10 1.72 5.98 -2.39 -0.01 1.71 16 50 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.09 1.62 7.87 -2.39 -0.02 1.60 16 52 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.13 1.73 8.09 -2.39 -0.02 1.71 16 Total: -1.00 -84.36 430.67 1.80 -82.56 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.16 Total: 33.94 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.87 Total: 9.54 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -4.28 Total: -125.66 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -2.98 Total: -49.89 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -84.36 1.80 -82.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479536303.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.777 kcal (2) G-P(sol) polarization free energy of solvation -84.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds