Wall clock time and date at job start Sat Apr 11 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47138 * 2 1 4 4 C 1.42906 * 113.99995 * 184.96989 * 3 2 1 5 5 H 1.09005 * 109.47053 * 34.11492 * 4 3 2 6 6 C 1.50691 * 109.47163 * 154.11266 * 4 3 2 7 7 O 1.21286 * 120.00306 * 8.52852 * 6 4 3 8 8 N 1.34781 * 120.00052 * 188.52288 * 6 4 3 9 9 C 1.46502 * 120.00269 * 184.41714 * 8 6 4 10 10 C 1.52993 * 109.47176 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.51827 * 60.10274 * 10 9 8 12 12 C 1.53299 * 109.51005 * 180.25545 * 10 9 8 13 13 N 1.47156 * 108.38098 * 172.22497 * 12 10 9 14 14 C 1.36937 * 120.98161 * 129.44354 * 13 12 10 15 15 H 1.07998 * 119.99603 * 209.94699 * 14 13 12 16 16 C 1.38811 * 120.00094 * 29.94508 * 14 13 12 17 17 N 1.31625 * 119.99928 * 10.61326 * 16 14 13 18 18 Si 1.86796 * 120.00054 * 190.60783 * 16 14 13 19 19 H 1.48498 * 109.47138 * 90.00338 * 18 16 14 20 20 H 1.48499 * 109.47320 * 210.00122 * 18 16 14 21 21 H 1.48500 * 109.47153 * 330.00199 * 18 16 14 22 22 C 1.47150 * 118.03525 * 309.45675 * 13 12 10 23 23 C 1.53296 * 108.38354 * 50.54471 * 22 13 12 24 24 O 1.42965 * 109.21898 * 307.69126 * 23 22 13 25 25 C 1.53003 * 109.46973 * 274.11320 * 4 3 2 26 26 C 1.54257 * 110.03171 * 291.41882 * 25 4 3 27 27 C 1.54965 * 104.16143 * 217.13592 * 26 25 4 28 28 C 1.54885 * 102.77429 * 37.88830 * 27 26 25 29 29 C 1.53876 * 110.03239 * 174.20025 * 25 4 3 30 30 H 1.09003 * 109.47343 * 59.99682 * 1 2 3 31 31 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46970 * 299.99716 * 1 2 3 33 33 H 1.09001 * 109.46970 * 240.00284 * 2 1 3 34 34 H 1.08993 * 109.47271 * 120.00294 * 2 1 3 35 35 H 0.96995 * 119.99938 * 4.41954 * 8 6 4 36 36 H 1.08996 * 109.46911 * 59.99887 * 9 8 6 37 37 H 1.09000 * 109.46742 * 300.00340 * 9 8 6 38 38 H 1.08996 * 109.68086 * 291.94378 * 12 10 9 39 39 H 1.08995 * 109.68136 * 52.50231 * 12 10 9 40 40 H 0.96996 * 119.99646 * 180.02562 * 17 16 14 41 41 H 1.08992 * 109.68743 * 290.81780 * 22 13 12 42 42 H 1.08999 * 109.71180 * 170.27894 * 22 13 12 43 43 H 1.08999 * 109.51333 * 187.77140 * 23 22 13 44 44 H 1.09001 * 109.51869 * 67.61663 * 23 22 13 45 45 H 1.09000 * 110.01162 * 52.81196 * 25 4 3 46 46 H 1.08996 * 110.49294 * 335.78461 * 26 25 4 47 47 H 1.09003 * 110.48620 * 98.42639 * 26 25 4 48 48 H 1.09008 * 110.72018 * 279.57367 * 27 26 25 49 49 H 1.08999 * 110.92337 * 156.29923 * 27 26 25 50 50 H 1.09008 * 110.48709 * 203.40883 * 28 27 26 51 51 H 1.09000 * 110.60199 * 80.81988 * 28 27 26 52 52 H 1.08995 * 110.03145 * 238.57103 * 29 25 4 53 53 H 1.09003 * 110.03139 * 359.94912 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4263 1.4617 -0.1131 5 1 3.8062 0.6597 -0.7461 6 6 3.7757 2.7934 -0.7258 7 8 2.9129 3.6294 -0.8925 8 7 5.0470 3.0556 -1.0884 9 6 5.4057 4.3831 -1.5939 10 6 6.8976 4.4143 -1.9313 11 1 7.1142 3.6665 -2.6941 12 6 7.2752 5.8050 -2.4544 13 7 8.7389 5.8670 -2.5928 14 6 9.3193 6.2971 -3.7562 15 1 10.2856 5.9152 -4.0508 16 6 8.6657 7.2239 -4.5566 17 7 7.5965 7.8450 -4.1056 18 14 9.3037 7.5897 -6.2737 19 1 8.6630 6.6686 -7.2464 20 1 8.9793 8.9934 -6.6337 21 1 10.7759 7.3980 -6.3061 22 6 9.5604 5.4528 -1.4444 23 6 9.0716 4.0793 -0.9706 24 8 7.6592 4.1312 -0.7550 25 6 4.0585 1.3580 1.2763 26 6 3.7000 2.6025 2.1143 27 6 4.9832 2.8900 2.9341 28 6 6.1135 2.5655 1.9262 29 6 5.5925 1.3340 1.1569 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.7245 2.3654 -1.0148 36 1 5.1891 5.1324 -0.8326 37 1 4.8259 4.5989 -2.4914 38 1 6.8073 5.9717 -3.4246 39 1 6.9406 6.5657 -1.7492 40 1 7.1396 8.4924 -4.6651 41 1 9.4559 6.1781 -0.6376 42 1 10.6060 5.3865 -1.7452 43 1 9.5726 3.8160 -0.0390 44 1 9.2967 3.3307 -1.7301 45 1 3.7090 0.4560 1.7788 46 1 3.4659 3.4456 1.4644 47 1 2.8626 2.3872 2.7780 48 1 5.0406 2.2345 3.8032 49 1 5.0249 3.9360 3.2378 50 1 7.0367 2.3236 2.4530 51 1 6.2719 3.4017 1.2452 52 1 5.9874 0.4209 1.6023 53 1 5.8864 1.3954 0.1091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482194379.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:16 Heat of formation + Delta-G solvation = -129.975544 kcal Electronic energy + Delta-G solvation = -32103.575641 eV Core-core repulsion = 27974.977220 eV Total energy + Delta-G solvation = -4128.598421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65875 -40.12467 -38.90408 -38.09497 -36.43062 -35.79106 -33.26497 -32.97854 -32.30803 -30.70747 -29.56498 -29.04779 -27.57548 -25.99371 -24.99760 -23.70427 -23.35099 -22.02431 -21.50477 -21.33532 -20.66070 -18.94338 -18.29246 -17.90070 -17.54946 -17.20221 -16.93683 -16.54333 -16.45690 -16.07428 -15.76429 -15.62082 -15.47597 -15.25719 -15.01569 -14.62292 -14.57313 -14.37501 -14.19243 -13.64749 -13.50036 -13.27568 -13.18006 -13.03309 -12.92563 -12.71403 -12.52165 -12.37882 -12.16775 -12.08833 -11.97498 -11.91146 -11.88437 -11.82277 -11.81817 -11.66811 -11.34311 -11.25919 -10.91415 -10.73712 -10.57131 -10.35943 -10.12329 -8.70007 -7.90728 -5.44040 1.45897 1.46364 1.55794 1.57417 1.82947 2.46218 2.77274 2.92104 3.25200 3.50515 3.53650 3.59931 3.74925 3.87678 4.04602 4.07344 4.08153 4.17439 4.28511 4.35368 4.39485 4.47503 4.49631 4.53175 4.56000 4.61664 4.66475 4.69571 4.73287 4.80330 4.82854 4.85721 4.91731 4.98999 5.01729 5.04985 5.09603 5.11174 5.25245 5.27794 5.29467 5.33641 5.37004 5.44280 5.55756 5.59391 5.62679 6.13644 6.29064 6.35461 6.57052 7.06495 7.22152 7.74170 8.28916 9.14189 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.002924 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.881510 B = 9574.349763 C =10688.547869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.387 6.387 4 C 0.084 3.916 5 H 0.111 0.889 6 C 0.515 3.485 7 O -0.576 6.576 8 N -0.702 5.702 9 C 0.144 3.856 10 C 0.080 3.920 11 H 0.064 0.936 12 C 0.162 3.838 13 N -0.614 5.614 14 C -0.264 4.264 15 H 0.074 0.926 16 C -0.051 4.051 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.265 1.265 22 C 0.102 3.898 23 C 0.059 3.941 24 O -0.380 6.380 25 C -0.100 4.100 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.127 4.127 29 C -0.115 4.115 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.064 0.936 39 H -0.003 1.003 40 H 0.251 0.749 41 H 0.013 0.987 42 H 0.071 0.929 43 H 0.122 0.878 44 H 0.054 0.946 45 H 0.110 0.890 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.050 0.950 50 H 0.076 0.924 51 H 0.056 0.944 52 H 0.097 0.903 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -21.790 12.532 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.306 6.306 4 C 0.023 3.977 5 H 0.128 0.872 6 C 0.302 3.698 7 O -0.455 6.455 8 N -0.359 5.359 9 C 0.019 3.981 10 C 0.020 3.980 11 H 0.082 0.918 12 C 0.035 3.965 13 N -0.338 5.338 14 C -0.394 4.394 15 H 0.091 0.909 16 C -0.246 4.246 17 N -0.583 5.583 18 Si 0.800 3.200 19 H -0.210 1.210 20 H -0.224 1.224 21 H -0.190 1.190 22 C -0.023 4.023 23 C -0.019 4.019 24 O -0.299 6.299 25 C -0.119 4.119 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.164 4.164 29 C -0.153 4.153 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.015 0.985 40 H 0.060 0.940 41 H 0.031 0.969 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.072 0.928 45 H 0.128 0.872 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.102 0.898 49 H 0.069 0.931 50 H 0.094 0.906 51 H 0.075 0.925 52 H 0.115 0.885 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.231 -20.946 12.527 25.189 hybrid contribution 0.547 0.946 -1.353 1.739 sum -5.684 -20.000 11.173 23.604 Atomic orbital electron populations 1.21769 0.93307 1.03420 1.02295 1.22848 0.96171 0.82301 1.01669 1.88044 1.19411 1.28583 1.94548 1.22167 0.83568 0.94266 0.97708 0.87158 1.20900 0.82020 0.89806 0.77117 1.90700 1.49134 1.50036 1.55620 1.46120 1.09896 1.14515 1.65407 1.21060 0.92907 0.85025 0.99070 1.22692 0.89563 0.97889 0.87863 0.91828 1.21045 0.84747 0.91591 0.99067 1.44290 1.01192 1.76849 1.11494 1.19541 1.04212 1.17789 0.97894 0.90882 1.25975 0.98949 0.96329 1.03353 1.70145 1.22380 1.28641 1.37127 0.85200 0.78534 0.76506 0.79791 1.20972 1.22376 1.18996 1.21835 0.95752 0.95372 0.89389 1.23058 0.80885 0.95853 1.02089 1.87800 1.18197 1.91726 1.32198 1.22260 0.96303 1.00172 0.93200 1.22378 0.98291 0.96788 0.98231 1.22494 0.94166 1.00884 0.98314 1.22368 0.98105 0.98103 0.97833 1.22304 0.92600 0.99783 1.00619 0.93268 0.88492 0.92506 0.92013 0.91063 0.74488 0.92756 0.91247 0.91809 0.98500 0.94026 0.96856 0.91106 0.86035 0.92797 0.87222 0.94667 0.91371 0.89787 0.93093 0.90569 0.92471 0.88455 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.71 6.49 71.98 0.47 1.18 16 3 O -0.39 -9.61 9.42 -130.08 -1.22 -10.83 16 4 C 0.08 1.82 2.24 29.85 0.07 1.89 16 5 H 0.11 1.69 7.77 -2.38 -0.02 1.67 16 6 C 0.51 15.72 5.43 87.65 0.48 16.20 16 7 O -0.58 -23.65 16.11 15.85 0.26 -23.39 16 8 N -0.70 -19.61 4.47 -463.07 -2.07 -21.68 16 9 C 0.14 5.04 5.37 86.38 0.46 5.50 16 10 C 0.08 2.91 2.87 30.69 0.09 3.00 16 11 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 12 C 0.16 7.83 4.68 86.35 0.40 8.23 16 13 N -0.61 -30.34 3.04 -697.56 -2.12 -32.46 16 14 C -0.26 -14.22 9.64 84.03 0.81 -13.41 16 15 H 0.07 3.76 7.85 -2.91 -0.02 3.74 16 16 C -0.05 -2.80 5.07 84.86 0.43 -2.37 16 17 N -0.94 -55.64 11.03 21.65 0.24 -55.40 16 18 Si 0.97 44.37 29.57 68.60 2.03 46.39 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 C 0.10 4.02 6.73 86.35 0.58 4.60 16 23 C 0.06 1.76 6.99 72.08 0.50 2.27 16 24 O -0.38 -12.46 9.38 -148.98 -1.40 -13.86 16 25 C -0.10 -1.74 2.89 -10.07 -0.03 -1.77 16 26 C -0.12 -2.71 6.05 31.69 0.19 -2.52 16 27 C -0.12 -2.40 6.91 31.91 0.22 -2.18 16 28 C -0.13 -2.47 6.79 31.67 0.22 -2.25 16 29 C -0.12 -1.73 5.75 31.32 0.18 -1.55 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.78 7.97 -2.39 -0.02 0.76 16 34 H 0.07 0.78 7.57 -2.39 -0.02 0.76 16 35 H 0.41 9.28 5.38 -92.71 -0.50 8.78 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.06 3.47 6.22 -2.39 -0.01 3.46 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 43 H 0.12 2.75 8.14 -2.39 -0.02 2.74 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.11 1.37 7.54 -2.39 -0.02 1.35 16 46 H 0.03 1.09 6.06 -2.39 -0.01 1.07 16 47 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.06 1.47 6.99 -2.39 -0.02 1.46 16 52 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 53 H 0.06 0.97 4.61 -2.39 -0.01 0.96 16 Total: -1.00 -73.11 404.89 1.91 -71.20 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.39 Total: 24.68 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.81 Total: 15.36 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -3.95 Total: -109.54 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -2.37 Total: -48.09 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.11 1.91 -71.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482194379.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.774 kcal (2) G-P(sol) polarization free energy of solvation -73.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds