Wall clock time and date at job start Sat Apr 11 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47481 * 2 1 4 4 C 1.42897 * 114.00096 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47294 * 30.00389 * 4 3 2 6 6 C 1.50700 * 109.47244 * 269.99885 * 4 3 2 7 7 O 1.21283 * 119.99803 * 355.00185 * 6 4 3 8 8 N 1.34777 * 119.99675 * 175.28060 * 6 4 3 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 4 10 10 C 1.52998 * 110.89106 * 300.69820 * 9 8 6 11 11 C 1.55160 * 111.00257 * 176.81467 * 9 8 6 12 12 C 1.54319 * 102.94699 * 277.42851 * 11 9 8 13 13 N 1.47026 * 107.26988 * 337.80510 * 12 11 9 14 14 C 1.36932 * 125.65104 * 178.97317 * 13 12 11 15 15 H 1.07997 * 120.00289 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99815 * 359.97438 * 14 13 12 17 17 N 1.31613 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46951 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47196 * 119.99578 * 18 16 14 21 21 H 1.48496 * 109.46820 * 239.99696 * 18 16 14 22 22 C 1.47525 * 108.71421 * 358.94363 * 13 12 11 23 23 C 1.53001 * 109.46501 * 150.00151 * 4 3 2 24 24 C 1.53173 * 109.54574 * 59.82338 * 23 4 3 25 25 C 1.53111 * 109.15623 * 183.23746 * 24 23 4 26 26 O 1.42896 * 109.48495 * 57.47698 * 25 24 23 27 27 C 1.42907 * 114.09802 * 298.88575 * 26 25 24 28 28 C 1.53090 * 109.41597 * 61.16124 * 27 26 25 29 29 H 1.09004 * 109.46847 * 299.99345 * 1 2 3 30 30 H 1.08997 * 109.47187 * 60.00040 * 1 2 3 31 31 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47049 * 239.99793 * 2 1 3 33 33 H 1.09010 * 109.47384 * 120.00243 * 2 1 3 34 34 H 0.97000 * 119.99894 * 359.71837 * 8 6 4 35 35 H 1.08998 * 109.47165 * 59.29650 * 10 9 8 36 36 H 1.09000 * 109.47753 * 179.30437 * 10 9 8 37 37 H 1.09007 * 109.46902 * 299.30081 * 10 9 8 38 38 H 1.09006 * 110.71605 * 35.79472 * 11 9 8 39 39 H 1.09001 * 110.71860 * 158.88644 * 11 9 8 40 40 H 1.09001 * 109.88411 * 97.21904 * 12 11 9 41 41 H 1.09001 * 109.88534 * 218.38873 * 12 11 9 42 42 H 0.97008 * 120.00285 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.37002 * 265.30275 * 22 13 12 44 44 H 1.09005 * 110.41172 * 142.95019 * 22 13 12 45 45 H 1.09008 * 109.53780 * 180.02562 * 23 4 3 46 46 H 1.08997 * 109.52283 * 303.05348 * 24 23 4 47 47 H 1.09002 * 109.52010 * 63.24829 * 24 23 4 48 48 H 1.08998 * 109.40784 * 297.49506 * 25 24 23 49 49 H 1.09004 * 109.48770 * 177.50663 * 25 24 23 50 50 H 1.09001 * 109.48205 * 301.17649 * 27 26 25 51 51 H 1.08998 * 109.49156 * 181.14822 * 27 26 25 52 52 H 1.08999 * 109.52634 * 182.48870 * 28 27 26 53 53 H 1.09002 * 109.57272 * 62.32344 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9311 1.4999 1.4216 7 8 3.1416 1.5294 2.3418 8 7 5.2558 1.5085 1.6696 9 6 5.7420 1.5533 3.0509 10 6 5.2342 2.8060 3.7676 11 6 7.2909 1.4750 3.0980 12 6 7.5640 -0.0400 2.9900 13 7 6.3443 -0.7355 3.4264 14 6 6.1685 -2.0931 3.4604 15 1 5.2307 -2.5079 3.7992 16 6 7.1958 -2.9362 3.0593 17 7 8.3385 -2.4307 2.6459 18 14 6.9563 -4.7882 3.1062 19 1 5.5930 -5.0985 3.6068 20 1 7.1202 -5.3434 1.7387 21 1 7.9653 -5.3950 4.0111 22 6 5.3414 0.2712 3.8225 23 6 3.8409 2.7456 -0.7207 24 6 3.2301 3.9530 -0.0029 25 6 3.5784 5.2270 -0.7774 26 8 3.1015 5.1142 -2.1197 27 6 3.6757 4.0309 -2.8538 28 6 3.3295 2.7087 -2.1641 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 5.8872 1.4849 0.9337 35 1 4.1442 2.8073 3.7687 36 1 5.5987 2.8099 4.7949 37 1 5.5980 3.6936 3.2497 38 1 7.7298 2.0071 2.2539 39 1 7.6686 1.8714 4.0405 40 1 7.7911 -0.3031 1.9568 41 1 8.3980 -0.3134 3.6363 42 1 9.0563 -3.0199 2.3652 43 1 5.3838 0.4466 4.8975 44 1 4.3424 -0.0515 3.5291 45 1 4.9275 2.8326 -0.7213 46 1 2.1469 3.8403 0.0422 47 1 3.6329 4.0180 1.0079 48 1 4.6600 5.3613 -0.7860 49 1 3.1093 6.0851 -0.2958 50 1 4.7586 4.1496 -2.8896 51 1 3.2768 4.0271 -3.8682 52 1 3.8033 1.8846 -2.6975 53 1 2.2485 2.5690 -2.1640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484053168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:23 Heat of formation + Delta-G solvation = -132.977424 kcal Electronic energy + Delta-G solvation = -32646.909724 eV Core-core repulsion = 28518.181131 eV Total energy + Delta-G solvation = -4128.728592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69534 -40.27738 -39.24531 -38.11661 -35.71216 -35.30201 -33.56954 -32.09398 -31.98721 -31.72968 -30.39445 -28.69008 -27.53802 -25.51589 -24.73938 -24.48151 -23.76298 -22.37260 -21.74840 -21.08058 -20.34604 -19.09623 -18.32388 -17.88263 -17.28054 -17.01661 -16.78968 -16.65068 -16.23326 -15.96960 -15.78182 -15.61196 -15.43816 -15.29676 -14.76535 -14.68547 -14.25314 -14.17524 -13.89912 -13.57428 -13.45877 -13.33444 -13.18032 -13.12286 -12.93729 -12.87785 -12.78827 -12.75495 -12.23306 -12.18702 -12.14430 -12.05833 -12.04290 -11.99226 -11.72051 -11.69841 -11.49822 -11.20239 -11.15486 -10.73795 -10.50350 -10.07780 -9.97255 -8.88621 -7.88138 -5.21795 1.41630 1.42816 1.52763 1.65978 2.08890 2.45819 2.68812 3.02811 3.30041 3.50332 3.58584 3.59781 3.70074 3.83277 3.99585 4.03657 4.06433 4.10988 4.18276 4.19667 4.29731 4.39464 4.42544 4.46624 4.61839 4.62997 4.67995 4.70183 4.74606 4.80525 4.82619 4.83736 4.85245 4.91430 4.94401 4.99375 5.00881 5.07764 5.15388 5.20639 5.22718 5.35592 5.40430 5.43932 5.63804 5.69180 5.77249 6.03635 6.17883 6.32571 6.65982 7.09886 7.33587 7.75012 8.39552 9.21634 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.003628 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.044223 B = 7715.894953 C = 8559.081133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.361 6.361 4 C 0.082 3.918 5 H 0.093 0.907 6 C 0.494 3.506 7 O -0.562 6.562 8 N -0.696 5.696 9 C 0.169 3.831 10 C -0.140 4.140 11 C -0.128 4.128 12 C 0.186 3.814 13 N -0.621 5.621 14 C -0.243 4.243 15 H 0.066 0.934 16 C -0.055 4.055 17 N -0.943 5.943 18 Si 0.971 3.029 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.290 1.290 22 C 0.130 3.870 23 C -0.073 4.073 24 C -0.141 4.141 25 C 0.065 3.935 26 O -0.403 6.403 27 C 0.059 3.941 28 C -0.143 4.143 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.407 0.593 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.020 0.980 41 H 0.007 0.993 42 H 0.248 0.752 43 H 0.020 0.980 44 H 0.024 0.976 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.065 0.935 51 H 0.107 0.893 52 H 0.090 0.910 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.530 14.686 -11.534 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.279 6.279 4 C 0.020 3.980 5 H 0.110 0.890 6 C 0.281 3.719 7 O -0.440 6.440 8 N -0.349 5.349 9 C 0.082 3.918 10 C -0.198 4.198 11 C -0.166 4.166 12 C 0.061 3.939 13 N -0.347 5.347 14 C -0.372 4.372 15 H 0.084 0.916 16 C -0.249 4.249 17 N -0.592 5.592 18 Si 0.800 3.200 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.217 1.217 22 C 0.004 3.996 23 C -0.092 4.092 24 C -0.179 4.179 25 C -0.012 4.012 26 O -0.322 6.322 27 C -0.017 4.017 28 C -0.181 4.181 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.243 0.757 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.039 0.961 41 H 0.025 0.975 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.043 0.957 45 H 0.123 0.877 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.084 0.916 51 H 0.125 0.875 52 H 0.108 0.892 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.269 14.802 -10.996 20.208 hybrid contribution 0.628 -2.133 0.428 2.264 sum -7.642 12.669 -10.568 18.181 Atomic orbital electron populations 1.21676 0.92064 1.03215 1.02812 1.22673 0.97082 0.83179 0.99677 1.87944 1.18596 1.27085 1.94275 1.22127 0.83410 1.01240 0.91219 0.88952 1.21621 0.82373 0.75307 0.92627 1.90638 1.56120 1.50164 1.47112 1.45819 1.06707 1.74104 1.08222 1.21306 0.94251 0.94359 0.81911 1.21915 1.01889 0.95605 1.00433 1.23099 0.92805 0.96762 1.03942 1.20943 0.87743 0.88152 0.97058 1.44716 1.12263 1.01098 1.76602 1.19325 0.98746 0.81962 1.37168 0.91636 1.25476 0.95918 1.01893 1.01590 1.70141 1.04598 1.33856 1.50608 0.85121 0.77308 0.80455 0.77117 1.19977 1.21363 1.21657 1.21970 0.92208 0.89620 0.95783 1.21325 1.01177 0.91247 0.95411 1.22075 1.01574 0.95170 0.99048 1.22619 0.99534 0.97047 0.81955 1.87905 1.68365 1.50940 1.25030 1.22725 0.98549 0.84791 0.95646 1.22171 1.02536 0.99476 0.93910 0.93116 0.90822 0.89539 0.91643 0.95893 0.75738 0.92603 0.91041 0.90285 0.88185 0.89253 0.96135 0.97453 0.94254 0.96204 0.95738 0.87719 0.92234 0.91878 0.91618 0.88322 0.91637 0.87520 0.89159 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.28 71.98 0.74 -2.29 16 2 C 0.05 1.32 6.46 71.98 0.46 1.79 16 3 O -0.36 -10.21 8.07 -129.99 -1.05 -11.26 16 4 C 0.08 2.09 2.26 29.85 0.07 2.16 16 5 H 0.09 2.20 7.79 -2.39 -0.02 2.18 16 6 C 0.49 15.93 5.33 87.66 0.47 16.39 16 7 O -0.56 -22.49 13.32 15.95 0.21 -22.28 16 8 N -0.70 -21.05 5.14 -416.64 -2.14 -23.19 16 9 C 0.17 5.66 0.82 5.00 0.00 5.66 16 10 C -0.14 -3.97 8.57 71.98 0.62 -3.35 16 11 C -0.13 -4.16 5.98 31.78 0.19 -3.97 16 12 C 0.19 8.67 5.36 86.73 0.47 9.13 16 13 N -0.62 -32.16 3.40 -691.71 -2.35 -34.51 16 14 C -0.24 -13.98 10.28 84.04 0.86 -13.12 16 15 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 16 C -0.06 -3.13 5.49 84.86 0.47 -2.67 16 17 N -0.94 -55.14 10.31 21.65 0.22 -54.92 16 18 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 C 0.13 5.81 6.14 86.84 0.53 6.34 16 23 C -0.07 -1.40 2.12 -10.67 -0.02 -1.43 16 24 C -0.14 -3.01 5.01 30.69 0.15 -2.85 16 25 C 0.06 1.13 6.84 72.02 0.49 1.63 16 26 O -0.40 -8.05 10.77 -148.98 -1.60 -9.66 16 27 C 0.06 0.87 6.84 72.01 0.49 1.36 16 28 C -0.14 -2.34 5.32 30.69 0.16 -2.17 16 29 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 33 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16 34 H 0.41 10.44 8.27 -92.71 -0.77 9.67 16 35 H 0.05 1.83 6.23 -2.39 -0.01 1.82 16 36 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.10 2.58 8.07 -2.38 -0.02 2.56 16 39 H 0.09 2.66 8.04 -2.39 -0.02 2.65 16 40 H 0.02 1.04 7.38 -2.39 -0.02 1.03 16 41 H 0.01 0.39 7.51 -2.39 -0.02 0.37 16 42 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 43 H 0.02 0.90 8.03 -2.39 -0.02 0.89 16 44 H 0.02 1.21 6.59 -2.38 -0.02 1.19 16 45 H 0.10 1.62 7.92 -2.38 -0.02 1.61 16 46 H 0.06 1.56 7.60 -2.39 -0.02 1.54 16 47 H 0.06 1.48 7.35 -2.39 -0.02 1.46 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.07 1.34 7.60 -2.39 -0.02 1.33 16 Total: -1.00 -73.39 407.11 1.59 -71.80 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.11 Total: 23.36 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.16 Total: 12.63 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.27 Total: -112.61 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -2.44 Total: -43.19 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -73.39 1.59 -71.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484053168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.178 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds