Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47214 * 29.99871 * 4 3 2 6 6 C 1.50703 * 109.47218 * 270.00111 * 4 3 2 7 7 O 1.21283 * 120.00093 * 354.99791 * 6 4 3 8 8 N 1.34777 * 120.00177 * 174.99818 * 6 4 3 9 9 C 1.46497 * 120.00108 * 180.02562 * 8 6 4 10 10 C 1.53002 * 110.64124 * 56.85885 * 9 8 6 11 11 C 1.55155 * 110.72044 * 180.02562 * 9 8 6 12 12 C 1.54910 * 101.58343 * 82.85884 * 11 9 8 13 13 N 1.47428 * 104.82834 * 37.01118 * 12 11 9 14 14 C 1.36940 * 125.64582 * 155.90969 * 13 12 11 15 15 H 1.08008 * 119.99862 * 179.97438 * 14 13 12 16 16 C 1.38814 * 120.00261 * 359.96969 * 14 13 12 17 17 N 1.31618 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99832 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47321 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46885 * 120.00536 * 18 16 14 21 21 H 1.48505 * 109.46932 * 239.99971 * 18 16 14 22 22 C 1.47023 * 108.70411 * 335.86860 * 13 12 11 23 23 C 1.53001 * 109.47403 * 150.00031 * 4 3 2 24 24 C 1.53175 * 109.54360 * 59.55519 * 23 4 3 25 25 C 1.53083 * 109.16460 * 183.15327 * 24 23 4 26 26 O 1.42902 * 109.41465 * 57.61254 * 25 24 23 27 27 C 1.42907 * 114.09469 * 298.83896 * 26 25 24 28 28 C 1.53093 * 109.41294 * 61.15972 * 27 26 25 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 33 33 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 34 34 H 0.97003 * 119.99660 * 0.02562 * 8 6 4 35 35 H 1.08995 * 109.46909 * 60.70227 * 10 9 8 36 36 H 1.09001 * 109.46943 * 180.69624 * 10 9 8 37 37 H 1.08991 * 109.46969 * 300.69955 * 10 9 8 38 38 H 1.08998 * 111.00930 * 200.93575 * 11 9 8 39 39 H 1.09000 * 111.00564 * 324.78565 * 11 9 8 40 40 H 1.09003 * 110.36857 * 155.84724 * 12 11 9 41 41 H 1.09000 * 110.37009 * 278.17366 * 12 11 9 42 42 H 0.96997 * 119.99756 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.88086 * 241.64088 * 22 13 12 44 44 H 1.08998 * 109.87852 * 120.47505 * 22 13 12 45 45 H 1.09003 * 109.54376 * 179.82387 * 23 4 3 46 46 H 1.09000 * 109.52159 * 303.06375 * 24 23 4 47 47 H 1.09000 * 109.51984 * 63.24518 * 24 23 4 48 48 H 1.08999 * 109.48289 * 297.62557 * 25 24 23 49 49 H 1.09000 * 109.48156 * 177.59321 * 25 24 23 50 50 H 1.08992 * 109.48220 * 301.17493 * 27 26 25 51 51 H 1.09004 * 109.48742 * 181.14592 * 27 26 25 52 52 H 1.09001 * 109.52019 * 182.48363 * 28 27 26 53 53 H 1.08998 * 109.57421 * 62.33004 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9310 1.5000 1.4216 7 8 3.1415 1.5295 2.3418 8 7 5.2557 1.5030 1.6700 9 6 5.7419 1.5411 3.0514 10 6 5.1787 0.3666 3.8540 11 6 7.2931 1.5379 3.0876 12 6 7.6126 3.0370 2.8633 13 7 6.5576 3.7613 3.5954 14 6 6.6550 5.0388 4.0789 15 1 5.8218 5.4824 4.6039 16 6 7.8244 5.7635 3.8944 17 7 8.8395 5.2230 3.2543 18 14 7.9574 7.5059 4.5547 19 1 6.6885 7.8772 5.2308 20 1 9.0769 7.5825 5.5275 21 1 8.2129 8.4428 3.4312 22 6 5.3834 2.8853 3.7194 23 6 3.8409 2.7457 -0.7207 24 6 3.2246 3.9527 -0.0068 25 6 3.5749 5.2266 -0.7801 26 8 3.1017 5.1120 -2.1236 27 6 3.6794 4.0290 -2.8553 28 6 3.3333 2.7069 -2.1653 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 5.8872 1.4798 0.9339 35 1 5.5032 -0.5708 3.4025 36 1 5.5421 0.4205 4.8803 37 1 4.0898 0.4136 3.8512 38 1 7.6606 1.2009 4.0569 39 1 7.7014 0.9267 2.2828 40 1 8.5934 3.2810 3.2714 41 1 7.5718 3.2788 1.8013 42 1 9.6565 5.7296 3.1251 43 1 4.5299 3.3353 3.2123 44 1 5.1498 2.7254 4.7720 45 1 4.9273 2.8345 -0.7182 46 1 2.1415 3.8376 0.0342 47 1 3.6232 4.0197 1.0054 48 1 4.6564 5.3625 -0.7859 49 1 3.1032 6.0842 -0.3004 50 1 4.7622 4.1492 -2.8883 51 1 3.2831 4.0237 -3.8707 52 1 3.8097 1.8830 -2.6968 53 1 2.2525 2.5655 -2.1680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484053169.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -130.286810 kcal Electronic energy + Delta-G solvation = -32834.943237 eV Core-core repulsion = 28706.331318 eV Total energy + Delta-G solvation = -4128.611919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73315 -40.31824 -39.27621 -38.11837 -35.74527 -35.34519 -33.57060 -32.09460 -32.01342 -31.68809 -30.39663 -28.70636 -27.55957 -25.52203 -24.76426 -24.54154 -23.70081 -22.32938 -21.85676 -21.11193 -20.35279 -19.07576 -18.38417 -17.87426 -17.32902 -17.07538 -16.85224 -16.67285 -16.22744 -15.94891 -15.73397 -15.63656 -15.44404 -15.15695 -14.84614 -14.65491 -14.28335 -14.19804 -14.05542 -13.63270 -13.33492 -13.29295 -13.26719 -13.13177 -12.92779 -12.83870 -12.80877 -12.78865 -12.29011 -12.20767 -12.08890 -12.04102 -12.03644 -11.95294 -11.78142 -11.68795 -11.49292 -11.21327 -11.13103 -10.76009 -10.55577 -10.07333 -10.01212 -8.88519 -7.79596 -5.22313 1.43977 1.44578 1.54738 1.61376 2.09999 2.47000 2.70872 2.93774 3.29847 3.48227 3.56888 3.65113 3.70610 3.78513 3.94998 4.00813 4.03626 4.13112 4.17104 4.21676 4.29492 4.33131 4.43269 4.50317 4.57143 4.62291 4.65932 4.67476 4.70962 4.76984 4.80337 4.83595 4.85266 4.88886 4.92085 5.00027 5.05443 5.08353 5.11503 5.15624 5.27041 5.31818 5.39299 5.42523 5.61572 5.68964 5.80692 6.11777 6.24018 6.30789 6.65204 7.11281 7.32240 7.76720 8.40075 9.21634 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010608 B = 0.004184 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.848485 B = 6690.620353 C = 8340.520212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.369 6.369 4 C 0.089 3.911 5 H 0.121 0.879 6 C 0.490 3.510 7 O -0.561 6.561 8 N -0.701 5.701 9 C 0.171 3.829 10 C -0.142 4.142 11 C -0.128 4.128 12 C 0.157 3.843 13 N -0.620 5.620 14 C -0.240 4.240 15 H 0.066 0.934 16 C -0.055 4.055 17 N -0.940 5.940 18 Si 0.972 3.028 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.289 1.289 22 C 0.139 3.861 23 C -0.076 4.076 24 C -0.137 4.137 25 C 0.067 3.933 26 O -0.400 6.400 27 C 0.051 3.949 28 C -0.135 4.135 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.409 0.591 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.075 0.925 41 H -0.004 1.004 42 H 0.248 0.752 43 H 0.004 0.996 44 H 0.015 0.985 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.039 0.961 48 H 0.047 0.953 49 H 0.088 0.912 50 H 0.057 0.943 51 H 0.115 0.885 52 H 0.105 0.895 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 -14.226 -13.839 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.287 6.287 4 C 0.028 3.972 5 H 0.139 0.861 6 C 0.277 3.723 7 O -0.439 6.439 8 N -0.354 5.354 9 C 0.085 3.915 10 C -0.200 4.200 11 C -0.166 4.166 12 C 0.032 3.968 13 N -0.346 5.346 14 C -0.369 4.369 15 H 0.084 0.916 16 C -0.248 4.248 17 N -0.590 5.590 18 Si 0.801 3.199 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.216 1.216 22 C 0.013 3.987 23 C -0.095 4.095 24 C -0.175 4.175 25 C -0.010 4.010 26 O -0.319 6.319 27 C -0.025 4.025 28 C -0.173 4.173 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.245 0.755 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.014 0.986 42 H 0.058 0.942 43 H 0.022 0.978 44 H 0.033 0.967 45 H 0.111 0.889 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.107 0.893 50 H 0.075 0.925 51 H 0.133 0.867 52 H 0.124 0.876 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.672 -13.761 -13.247 21.410 hybrid contribution 0.710 1.100 0.790 1.529 sum -8.962 -12.661 -12.457 19.895 Atomic orbital electron populations 1.21712 0.92948 1.03272 1.02359 1.22745 0.96508 0.82828 1.00558 1.88006 1.18471 1.27980 1.94245 1.22060 0.83614 1.00929 0.90644 0.86145 1.21804 0.82278 0.75294 0.92933 1.90650 1.56139 1.49906 1.47244 1.45953 1.06899 1.74405 1.08156 1.21115 0.94758 0.93729 0.81944 1.21967 1.01871 0.96582 0.99584 1.23212 0.92103 0.97934 1.03396 1.21746 0.94272 0.87685 0.93074 1.44742 1.12316 1.12142 1.65391 1.19343 0.98922 0.89609 1.29036 0.91638 1.25445 0.96003 1.02035 1.01337 1.70000 1.04756 1.36853 1.47388 0.85108 0.77444 0.79930 0.77443 1.20061 1.21374 1.21595 1.21632 0.89546 0.91021 0.96502 1.21312 1.00568 0.91578 0.96041 1.21985 1.01580 0.95762 0.98208 1.22457 0.98564 0.97482 0.82494 1.87892 1.68069 1.51618 1.24365 1.22843 0.98235 0.85350 0.96041 1.22142 1.02890 0.99175 0.93088 0.88979 0.91511 0.93754 0.94475 0.90613 0.75485 0.90309 0.91668 0.92292 0.90129 0.87902 0.90684 0.98580 0.94177 0.97787 0.96721 0.88878 0.91531 0.94177 0.93432 0.89328 0.92513 0.86684 0.87633 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.05 0.96 6.46 71.98 0.46 1.42 16 3 O -0.37 -9.34 8.07 -129.99 -1.05 -10.39 16 4 C 0.09 2.03 2.26 29.85 0.07 2.09 16 5 H 0.12 1.80 7.79 -2.38 -0.02 1.78 16 6 C 0.49 14.93 5.18 87.66 0.45 15.39 16 7 O -0.56 -21.85 13.50 15.95 0.22 -21.64 16 8 N -0.70 -20.25 5.10 -417.56 -2.13 -22.38 16 9 C 0.17 5.84 0.81 4.79 0.00 5.84 16 10 C -0.14 -4.23 8.38 71.98 0.60 -3.63 16 11 C -0.13 -4.28 6.07 31.99 0.19 -4.09 16 12 C 0.16 7.28 5.87 86.85 0.51 7.79 16 13 N -0.62 -32.38 3.39 -691.96 -2.35 -34.73 16 14 C -0.24 -13.87 10.27 84.03 0.86 -13.01 16 15 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 16 C -0.06 -3.12 5.49 84.86 0.47 -2.66 16 17 N -0.94 -54.50 10.09 21.65 0.22 -54.28 16 18 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 C 0.14 6.36 6.20 86.73 0.54 6.90 16 23 C -0.08 -1.73 2.13 -10.68 -0.02 -1.76 16 24 C -0.14 -4.19 5.01 30.68 0.15 -4.04 16 25 C 0.07 1.96 6.84 72.01 0.49 2.45 16 26 O -0.40 -10.88 10.77 -148.98 -1.60 -12.49 16 27 C 0.05 0.98 6.84 72.01 0.49 1.47 16 28 C -0.14 -2.34 5.32 30.68 0.16 -2.17 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.41 9.56 8.27 -92.71 -0.77 8.80 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 37 H 0.06 2.00 6.03 -2.39 -0.01 1.98 16 38 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 39 H 0.10 2.64 8.07 -2.39 -0.02 2.63 16 40 H 0.08 4.01 5.88 -2.39 -0.01 3.99 16 41 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.00 0.21 6.90 -2.39 -0.02 0.19 16 44 H 0.01 0.70 7.81 -2.39 -0.02 0.69 16 45 H 0.09 2.03 7.92 -2.39 -0.02 2.01 16 46 H 0.07 2.19 7.59 -2.39 -0.02 2.17 16 47 H 0.04 1.52 7.36 -2.39 -0.02 1.50 16 48 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 50 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.07 1.45 7.60 -2.39 -0.02 1.43 16 Total: -1.00 -73.87 406.37 1.63 -72.25 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.11 Total: 25.16 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.18 Total: 10.23 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -4.26 Total: -111.39 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -2.44 Total: -44.52 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -73.87 1.63 -72.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484053169.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.039 kcal (2) G-P(sol) polarization free energy of solvation -73.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds