Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42903 * 109.46865 * 2 1 4 4 C 1.42902 * 113.99790 * 184.98692 * 3 2 1 5 5 C 1.53001 * 109.47186 * 184.98321 * 4 3 2 6 6 C 1.52995 * 109.47290 * 175.23791 * 5 4 3 7 7 C 1.50696 * 112.85221 * 301.58577 * 6 5 4 8 8 O 1.21279 * 120.00248 * 115.36183 * 7 6 5 9 9 N 1.34780 * 119.99441 * 295.35795 * 7 6 5 10 10 C 1.47161 * 120.94723 * 355.03163 * 9 7 6 11 11 C 1.53296 * 108.37773 * 230.51575 * 10 9 7 12 12 O 1.42966 * 109.26064 * 307.77236 * 11 10 9 13 13 C 1.42958 * 114.16749 * 62.55657 * 12 11 10 14 14 H 1.09002 * 109.51050 * 57.38979 * 13 12 11 15 15 C 1.53001 * 109.51148 * 177.49300 * 13 12 11 16 16 N 1.46497 * 109.47019 * 299.99825 * 15 13 12 17 17 C 1.36936 * 120.00029 * 179.97438 * 16 15 13 18 18 H 1.08008 * 120.00021 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00261 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99979 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 120.00004 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47144 * 60.00264 * 21 19 17 23 23 H 1.48497 * 109.46835 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46826 * 300.00155 * 21 19 17 25 25 C 1.47155 * 120.97621 * 175.09302 * 9 7 6 26 26 C 1.53785 * 113.68697 * 72.85323 * 6 5 4 27 27 C 1.53785 * 87.08307 * 89.12808 * 26 6 5 28 28 C 1.53782 * 113.61210 * 170.38430 * 6 5 4 29 29 H 1.09000 * 109.47217 * 299.99787 * 1 2 3 30 30 H 1.09000 * 109.47845 * 60.00057 * 1 2 3 31 31 H 1.09007 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46856 * 240.00549 * 2 1 3 33 33 H 1.08993 * 109.47313 * 120.00356 * 2 1 3 34 34 H 1.08998 * 109.47592 * 64.97970 * 4 3 2 35 35 H 1.09005 * 109.46887 * 304.97848 * 4 3 2 36 36 H 1.09006 * 109.47391 * 55.23769 * 5 4 3 37 37 H 1.08999 * 109.46577 * 295.24070 * 5 4 3 38 38 H 1.09007 * 109.64560 * 110.81568 * 10 9 7 39 39 H 1.09000 * 109.72925 * 350.26282 * 10 9 7 40 40 H 1.09001 * 109.51560 * 187.82572 * 11 10 9 41 41 H 1.08999 * 109.51392 * 67.71997 * 11 10 9 42 42 H 1.09001 * 109.46897 * 60.00201 * 15 13 12 43 43 H 1.09003 * 109.46883 * 179.97438 * 15 13 12 44 44 H 0.97000 * 120.00070 * 0.02562 * 16 15 13 45 45 H 0.97004 * 119.99645 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.68661 * 9.71462 * 25 9 7 47 47 H 1.08996 * 109.68250 * 249.15737 * 25 9 7 48 48 H 1.08998 * 113.61141 * 203.67496 * 26 6 5 49 49 H 1.08993 * 113.61790 * 334.57531 * 26 6 5 50 50 H 1.08997 * 113.60758 * 270.88420 * 27 26 6 51 51 H 1.08997 * 113.61339 * 139.98200 * 27 26 6 52 52 H 1.08992 * 113.61632 * 25.35274 * 28 6 5 53 53 H 1.09008 * 113.61274 * 156.17197 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4261 1.4618 -0.1135 5 6 3.8317 2.9309 0.0216 6 6 5.3577 3.0409 0.0192 7 6 6.0033 2.2497 1.1274 8 8 6.7224 1.3099 0.8621 9 7 5.7815 2.5867 2.4134 10 6 5.0021 3.7865 2.7577 11 6 5.8042 4.6092 3.7724 12 8 6.1906 3.7678 4.8617 13 6 7.0515 2.6884 4.4907 14 1 7.9469 3.0849 4.0120 15 6 7.4470 1.8978 5.7395 16 7 8.1476 2.7811 6.6751 17 6 8.5992 2.2913 7.8714 18 1 8.4393 1.2537 8.1251 19 6 9.2625 3.1283 8.7581 20 7 9.4569 4.3928 8.4493 21 14 9.8792 2.4598 10.3899 22 1 10.8473 1.3616 10.1408 23 1 10.5477 3.5469 11.1491 24 1 8.7324 1.9398 11.1769 25 6 6.3128 1.7666 3.5137 26 6 5.9924 2.7994 -1.3606 27 6 5.8302 4.3079 -1.6120 28 6 5.8708 4.4869 -0.0852 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.7446 1.0849 -1.0854 35 1 3.9018 0.8795 0.6757 36 1 3.4401 3.3315 0.9567 37 1 3.4251 3.4985 -0.8154 38 1 4.0489 3.4909 3.1963 39 1 4.8256 4.3805 1.8610 40 1 5.1887 5.4279 4.1454 41 1 6.6947 5.0133 3.2909 42 1 6.5513 1.5001 6.2166 43 1 8.1030 1.0748 5.4558 44 1 8.2908 3.7130 6.4474 45 1 9.9201 4.9778 9.0691 46 1 7.0038 1.0230 3.1168 47 1 5.4921 1.2677 4.0290 48 1 7.0315 2.4741 -1.3123 49 1 5.3838 2.1792 -2.0186 50 1 4.8722 4.5757 -2.0576 51 1 6.6785 4.7583 -2.1272 52 1 5.1642 5.2288 0.2864 53 1 6.8763 4.6232 0.3131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484678434.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -114.721431 kcal Electronic energy + Delta-G solvation = -31329.410796 eV Core-core repulsion = 27201.473843 eV Total energy + Delta-G solvation = -4127.936953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24589 -40.26606 -39.02389 -38.51871 -36.69231 -35.79063 -33.95980 -33.29470 -31.97724 -31.13629 -29.42461 -28.02690 -26.69754 -26.23571 -24.86294 -24.24511 -23.71639 -23.44983 -22.33705 -21.02898 -19.52933 -19.21341 -18.05993 -17.87358 -17.69684 -17.38004 -17.13983 -16.76652 -16.46002 -16.18583 -16.01622 -15.72361 -15.54596 -15.43901 -15.04044 -14.85326 -14.52949 -14.35078 -14.05400 -13.80434 -13.71698 -13.37786 -13.28380 -13.17009 -12.95688 -12.90746 -12.76174 -12.65309 -12.42081 -12.31797 -12.23148 -12.09913 -12.03503 -11.96416 -11.89458 -11.65132 -11.43962 -11.25185 -11.10650 -10.95882 -10.64776 -10.57024 -9.65250 -9.02553 -7.94816 -5.24725 1.45984 1.46869 1.50846 1.56776 1.75375 2.53480 2.55762 2.72910 3.24392 3.38450 3.41634 3.52843 3.60078 3.79010 3.83945 3.88218 3.94052 4.00513 4.05983 4.11930 4.12537 4.18154 4.30077 4.35025 4.37667 4.39106 4.44186 4.47224 4.55171 4.62018 4.71641 4.73131 4.77347 4.82793 4.83879 4.87506 4.91668 4.97873 5.00509 5.05024 5.05551 5.13103 5.18305 5.24603 5.25233 5.46517 5.48392 6.15814 6.20790 6.25176 6.27782 7.00549 7.32475 8.05839 8.31429 9.28676 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.002469 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.197816 B =11336.747613 C =12319.850703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.400 6.400 4 C 0.065 3.935 5 C -0.086 4.086 6 C -0.102 4.102 7 C 0.525 3.475 8 O -0.581 6.581 9 N -0.610 5.610 10 C 0.071 3.929 11 C 0.038 3.962 12 O -0.386 6.386 13 C 0.090 3.910 14 H 0.047 0.953 15 C 0.161 3.839 16 N -0.739 5.739 17 C -0.250 4.250 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.978 3.022 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.093 3.907 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.124 4.124 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.024 0.976 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.052 0.948 42 H 0.029 0.971 43 H 0.041 0.959 44 H 0.376 0.624 45 H 0.252 0.748 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.108 0.892 51 H 0.079 0.921 52 H 0.106 0.894 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.877 -0.852 -25.166 30.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.320 6.320 4 C -0.012 4.012 5 C -0.124 4.124 6 C -0.105 4.105 7 C 0.316 3.684 8 O -0.461 6.461 9 N -0.343 5.343 10 C -0.051 4.051 11 C -0.039 4.039 12 O -0.305 6.305 13 C 0.031 3.969 14 H 0.065 0.935 15 C 0.034 3.966 16 N -0.382 5.382 17 C -0.381 4.381 18 H 0.095 0.905 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.806 3.194 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.203 1.203 25 C -0.030 4.030 26 C -0.157 4.157 27 C -0.161 4.161 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.208 0.792 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.126 0.874 51 H 0.098 0.902 52 H 0.124 0.876 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.668 -1.300 -24.979 30.624 hybrid contribution 1.155 -0.524 1.009 1.621 sum -16.513 -1.824 -23.970 29.165 Atomic orbital electron populations 1.21749 0.92305 1.03381 1.02991 1.22639 0.96724 0.83047 1.00345 1.87816 1.21482 1.27698 1.95042 1.22422 0.81083 0.97854 0.99830 1.21337 0.89922 0.95397 1.05701 1.22184 0.96228 0.98293 0.93818 1.21165 0.79971 0.83850 0.83457 1.90665 1.39944 1.31895 1.83547 1.48224 1.53533 1.27360 1.05148 1.22880 0.94858 0.86082 1.01277 1.23239 0.99190 0.93341 0.88158 1.88105 1.66963 1.41377 1.34060 1.22419 0.91728 0.88024 0.94729 0.93530 1.20756 0.94863 0.92489 0.88534 1.42380 1.67896 1.10029 1.17891 1.19624 1.28672 0.95183 0.94660 0.90510 1.25632 1.02451 0.96101 1.02657 1.69836 1.48560 1.05484 1.38062 0.85147 0.78115 0.76827 0.79261 1.20279 1.21973 1.20284 1.22064 0.99462 0.93915 0.87587 1.22878 1.00758 0.98726 0.93361 1.22836 1.04049 0.94172 0.95080 1.23085 1.01952 0.92738 0.98391 0.92258 0.91584 0.89454 0.92651 0.93923 0.92555 0.95761 0.89415 0.87172 0.89498 0.85290 0.85383 0.92951 0.95268 0.94169 0.79245 0.93947 0.89243 0.89824 0.91236 0.90155 0.87379 0.90219 0.87566 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -7.62 10.34 -148.98 -1.54 -9.16 16 4 C 0.06 1.17 5.66 71.98 0.41 1.58 16 5 C -0.09 -1.18 4.63 30.59 0.14 -1.04 16 6 C -0.10 -1.69 0.29 -52.40 -0.02 -1.70 16 7 C 0.53 13.46 5.52 87.66 0.48 13.94 16 8 O -0.58 -19.65 15.60 -3.03 -0.05 -19.70 16 9 N -0.61 -15.26 3.02 -817.32 -2.47 -17.73 16 10 C 0.07 1.33 5.08 86.35 0.44 1.77 16 11 C 0.04 0.90 6.98 72.08 0.50 1.40 16 12 O -0.39 -13.68 10.13 -148.98 -1.51 -15.19 16 13 C 0.09 3.21 2.87 30.69 0.09 3.30 16 14 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.16 6.87 5.96 86.38 0.51 7.39 16 16 N -0.74 -40.00 5.49 -343.45 -1.89 -41.89 16 17 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -61.13 13.06 21.65 0.28 -60.84 16 21 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C 0.09 2.80 5.94 86.35 0.51 3.31 16 26 C -0.12 -1.89 6.78 31.12 0.21 -1.68 16 27 C -0.12 -1.23 7.73 31.12 0.24 -0.98 16 28 C -0.12 -1.51 5.77 31.12 0.18 -1.33 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.95 7.36 -2.39 -0.02 0.94 16 35 H 0.02 0.55 7.19 -2.38 -0.02 0.53 16 36 H 0.09 1.14 6.06 -2.38 -0.01 1.13 16 37 H 0.11 1.03 7.30 -2.39 -0.02 1.02 16 38 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.13 1.59 3.48 -2.39 -0.01 1.59 16 40 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.38 21.79 7.54 -92.71 -0.70 21.09 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.54 16 46 H 0.09 2.87 7.06 -2.39 -0.02 2.86 16 47 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 48 H 0.07 1.45 7.70 -2.39 -0.02 1.43 16 49 H 0.08 1.13 7.30 -2.39 -0.02 1.12 16 50 H 0.11 0.63 7.60 -2.39 -0.02 0.61 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.11 0.76 7.03 -2.39 -0.02 0.75 16 53 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 Total: -1.00 -76.39 409.87 1.28 -75.11 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.19 Total: 31.71 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.23 Total: 8.42 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -4.07 Total: -120.47 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -3.10 Total: -44.05 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -76.39 1.28 -75.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484678434.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.613 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds