Wall clock time and date at job start Sat Apr 11 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.47192 * 2 1 4 4 C 1.42901 * 114.00037 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47066 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47150 * 65.00378 * 5 4 3 7 7 C 1.42898 * 114.00039 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47390 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99727 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00391 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00299 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.67395 * 34.48665 * 11 10 8 13 13 C 1.53331 * 109.70352 * 273.96386 * 11 10 8 14 14 C 1.52830 * 108.09214 * 176.12364 * 13 11 10 15 15 C 1.50736 * 111.74027 * 58.92069 * 14 13 11 16 16 H 1.08997 * 109.26246 * 186.23184 * 15 14 13 17 17 C 1.53902 * 113.02603 * 65.12689 * 15 14 13 18 18 N 1.47815 * 104.06295 * 198.52148 * 17 15 14 19 19 C 1.36935 * 125.65076 * 203.36684 * 18 17 15 20 20 H 1.08002 * 119.99818 * 179.97438 * 19 18 17 21 21 C 1.38805 * 120.00095 * 359.97438 * 19 18 17 22 22 N 1.31623 * 119.99769 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00185 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47183 * 60.00076 * 23 21 19 25 25 H 1.48500 * 109.47381 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47440 * 300.00292 * 23 21 19 27 27 C 1.47182 * 108.69812 * 23.35017 * 18 17 15 28 28 C 1.53993 * 113.94446 * 308.68518 * 15 14 13 29 29 H 1.09001 * 112.20753 * 280.65830 * 28 15 14 30 30 C 1.52594 * 109.67695 * 155.00074 * 11 10 8 31 31 H 1.08999 * 109.46951 * 300.00054 * 1 2 3 32 32 H 1.08999 * 109.46717 * 59.99666 * 1 2 3 33 33 H 1.08998 * 109.47180 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47494 * 240.00442 * 2 1 3 35 35 H 1.08995 * 109.47398 * 120.00091 * 2 1 3 36 36 H 1.09001 * 109.47032 * 60.00219 * 4 3 2 37 37 H 1.09005 * 109.47183 * 300.00531 * 4 3 2 38 38 H 1.09002 * 109.47529 * 305.00163 * 5 4 3 39 39 H 1.09003 * 109.47175 * 185.00332 * 5 4 3 40 40 H 1.09004 * 109.47158 * 59.99484 * 7 6 5 41 41 H 1.09003 * 109.47239 * 299.99613 * 7 6 5 42 42 H 0.97002 * 120.00183 * 359.97438 * 10 8 7 43 43 H 1.09007 * 109.73808 * 56.48003 * 13 11 10 44 44 H 1.08994 * 109.74293 * 295.77427 * 13 11 10 45 45 H 1.08996 * 109.02939 * 298.33789 * 14 13 11 46 46 H 1.08999 * 109.02292 * 179.50124 * 14 13 11 47 47 H 1.08999 * 110.51171 * 317.16901 * 17 15 14 48 48 H 1.08999 * 110.51436 * 79.87492 * 17 15 14 49 49 H 0.97001 * 119.99552 * 179.97438 * 22 21 19 50 50 H 1.09005 * 109.95633 * 241.58316 * 27 18 17 51 51 H 1.09002 * 109.98890 * 120.35655 * 27 18 17 52 52 H 1.08992 * 109.16433 * 61.71282 * 30 11 10 53 53 H 1.08997 * 109.11737 * 302.49210 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3977 3.5450 1.2223 7 6 3.7184 4.9338 1.3248 8 6 3.2231 5.4677 2.6442 9 8 2.6513 4.7314 3.4201 10 7 3.4146 6.7634 2.9615 11 6 2.9336 7.2822 4.2444 12 1 3.0230 6.5106 5.0091 13 6 1.4673 7.7104 4.1118 14 6 0.9757 8.1529 5.4896 15 6 1.7964 9.2933 6.0355 16 1 1.4853 9.5026 7.0589 17 6 1.6615 10.5830 5.2066 18 7 2.8369 11.3880 5.6007 19 6 2.9406 12.7499 5.5031 20 1 3.8459 13.2465 5.8198 21 6 1.8824 13.4920 4.9971 22 7 0.7790 12.8867 4.6117 23 14 2.0236 15.3499 4.8646 24 1 3.1624 15.6978 3.9771 25 1 0.7672 15.9028 4.2981 26 1 2.2535 15.9265 6.2136 27 6 3.8771 10.4831 6.1160 28 6 3.3150 9.0389 6.0095 29 1 3.6407 8.4052 6.8343 30 6 3.7573 8.5022 4.6466 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8340 0.9765 -0.8892 37 1 3.8333 0.9766 0.8908 38 1 3.3499 3.4417 -0.8406 39 1 4.9083 3.0255 -0.0880 40 1 3.2403 5.4782 0.5104 41 1 4.7990 5.0627 1.2630 42 1 3.8716 7.3523 2.3409 43 1 0.8688 6.8701 3.7599 44 1 1.3880 8.5396 3.4089 45 1 1.0380 7.3094 6.1770 46 1 -0.0644 8.4694 5.4109 47 1 1.6933 10.3571 4.1407 48 1 0.7388 11.1050 5.4598 49 1 0.0393 13.4054 4.2585 50 1 4.0955 10.7217 7.1569 51 1 4.7821 10.5755 5.5154 52 1 3.6306 9.2826 3.8964 53 1 4.8094 8.2218 4.6968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485657997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:50 Heat of formation + Delta-G solvation = -135.389320 kcal Electronic energy + Delta-G solvation = -30142.941351 eV Core-core repulsion = 26014.108171 eV Total energy + Delta-G solvation = -4128.833180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37189 -40.28841 -39.28026 -38.10892 -36.84534 -35.00184 -33.64005 -32.81083 -31.98983 -30.89839 -30.20643 -28.36615 -27.40558 -26.71367 -23.68066 -23.65013 -23.50490 -22.94075 -22.00270 -21.16952 -19.66227 -18.83587 -18.24414 -18.00014 -17.90923 -17.15897 -16.93228 -16.82651 -16.43739 -16.28447 -15.83213 -15.64846 -15.52092 -14.97448 -14.82581 -14.73738 -14.24086 -14.04397 -13.85624 -13.73457 -13.52605 -13.38161 -13.36073 -13.02130 -12.93356 -12.74755 -12.63456 -12.55420 -12.38286 -12.21791 -12.19095 -12.01437 -11.88618 -11.85173 -11.61249 -11.31044 -11.14870 -10.94319 -10.72622 -10.68502 -10.63497 -10.53497 -10.00350 -8.81496 -7.74153 -5.16697 1.46832 1.49659 1.56038 1.61364 1.84267 2.51705 2.77314 3.00384 3.35756 3.62074 3.72377 3.77851 3.84020 4.01463 4.08378 4.15686 4.18869 4.22186 4.24977 4.27186 4.34353 4.36266 4.37297 4.48378 4.52020 4.52933 4.54733 4.57405 4.62725 4.72791 4.75398 4.87548 4.89845 4.97976 5.02533 5.02698 5.09361 5.15697 5.25589 5.26557 5.30518 5.39837 5.51155 5.56231 5.61402 5.77595 5.90932 6.07594 6.32576 6.34309 6.60727 7.14551 7.27464 7.83103 8.48171 9.27791 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.001870 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.931987 B =14972.339411 C =15037.387401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.058 3.942 5 C 0.056 3.944 6 O -0.395 6.395 7 C 0.046 3.954 8 C 0.509 3.491 9 O -0.573 6.573 10 N -0.711 5.711 11 C 0.159 3.841 12 H 0.081 0.919 13 C -0.119 4.119 14 C -0.091 4.091 15 C -0.103 4.103 16 H 0.055 0.945 17 C 0.174 3.826 18 N -0.627 5.627 19 C -0.237 4.237 20 H 0.079 0.921 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 0.977 3.023 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.279 1.279 27 C 0.132 3.868 28 C -0.078 4.078 29 H 0.106 0.894 30 C -0.102 4.102 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.415 0.585 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.056 0.944 47 H -0.004 1.004 48 H 0.058 0.942 49 H 0.245 0.755 50 H 0.020 0.980 51 H 0.031 0.969 52 H 0.055 0.945 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -23.852 -11.034 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.335 6.335 4 C -0.018 4.018 5 C -0.020 4.020 6 O -0.314 6.314 7 C -0.033 4.033 8 C 0.296 3.704 9 O -0.452 6.452 10 N -0.364 5.364 11 C 0.054 3.946 12 H 0.099 0.901 13 C -0.157 4.157 14 C -0.130 4.130 15 C -0.122 4.122 16 H 0.074 0.926 17 C 0.050 3.950 18 N -0.354 5.354 19 C -0.366 4.366 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.598 5.598 23 Si 0.806 3.194 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.205 1.205 27 C 0.007 3.993 28 C -0.097 4.097 29 H 0.124 0.876 30 C -0.140 4.140 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.251 0.749 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.014 0.986 48 H 0.076 0.924 49 H 0.054 0.946 50 H 0.038 0.962 51 H 0.049 0.951 52 H 0.074 0.926 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.622 -24.148 -10.406 27.378 hybrid contribution 0.067 1.606 -0.440 1.666 sum 7.689 -22.543 -10.846 26.171 Atomic orbital electron populations 1.21774 0.93643 1.03255 1.02282 1.22625 0.95995 0.83030 1.00872 1.87955 1.22032 1.27881 1.95591 1.22713 0.81354 0.95807 1.01952 1.22860 1.00252 0.92560 0.86302 1.88041 1.81750 1.21865 1.39713 1.22323 1.02605 0.83888 0.94473 1.20906 0.78749 0.81924 0.88804 1.90708 1.43171 1.58487 1.52811 1.45884 1.59873 1.09932 1.20722 1.20765 0.92983 0.95463 0.85359 0.90096 1.21840 0.96267 0.99894 0.97738 1.20720 0.98945 0.97029 0.96261 1.21599 0.95304 0.95766 0.99542 0.92600 1.21479 0.91570 0.88263 0.93717 1.44903 1.14266 1.02038 1.74150 1.19409 0.99931 0.82419 1.34823 0.90320 1.25593 0.96292 1.02342 1.01847 1.70093 1.05635 1.34418 1.49642 0.85167 0.76426 0.80003 0.77822 1.20383 1.22182 1.20519 1.21801 0.91620 0.89692 0.96146 1.22071 0.94733 0.95089 0.97777 0.87582 1.21619 0.99791 0.95705 0.96861 0.93464 0.92173 0.88972 0.91513 0.93270 0.88777 0.92945 0.91600 0.88441 0.88036 0.86715 0.74878 0.92593 0.92620 0.90807 0.92485 0.98571 0.92360 0.94552 0.96199 0.95108 0.92618 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.41 -8.89 10.31 -144.34 -1.49 -10.38 16 4 C 0.06 0.86 6.32 71.98 0.45 1.32 16 5 C 0.06 0.80 6.32 71.98 0.45 1.26 16 6 O -0.39 -9.24 9.84 -125.55 -1.24 -10.48 16 7 C 0.05 0.81 6.42 71.24 0.46 1.27 16 8 C 0.51 13.22 7.89 87.66 0.69 13.91 16 9 O -0.57 -20.94 16.16 15.99 0.26 -20.68 16 10 N -0.71 -16.10 5.09 -442.65 -2.25 -18.36 16 11 C 0.16 4.36 2.43 44.97 0.11 4.47 16 12 H 0.08 2.38 7.57 -2.39 -0.02 2.37 16 13 C -0.12 -3.73 5.41 30.65 0.17 -3.57 16 14 C -0.09 -2.96 5.37 29.80 0.16 -2.80 16 15 C -0.10 -3.83 2.81 -10.89 -0.03 -3.86 16 16 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 17 C 0.17 8.49 4.79 86.43 0.41 8.90 16 18 N -0.63 -31.98 3.41 -690.54 -2.35 -34.33 16 19 C -0.24 -13.26 10.28 84.03 0.86 -12.39 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 22 N -0.95 -56.80 10.11 21.65 0.22 -56.58 16 23 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 C 0.13 5.29 6.54 87.05 0.57 5.86 16 28 C -0.08 -2.50 3.61 -9.65 -0.03 -2.53 16 29 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 30 C -0.10 -2.86 4.10 30.46 0.12 -2.73 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.41 6.88 8.61 -92.71 -0.80 6.09 16 43 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.06 1.93 6.80 -2.39 -0.02 1.92 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.00 -0.19 6.15 -2.39 -0.01 -0.20 16 48 H 0.06 3.33 5.96 -2.39 -0.01 3.32 16 49 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.03 1.19 7.74 -2.39 -0.02 1.17 16 52 H 0.06 1.84 7.15 -2.39 -0.02 1.82 16 53 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -78.67 413.18 1.34 -77.33 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.08 Total: 20.16 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 6.09 Total: 5.46 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -4.39 Total: -109.27 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -2.47 Total: -41.54 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -78.67 1.34 -77.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485657997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.060 kcal (2) G-P(sol) polarization free energy of solvation -78.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds