Wall clock time and date at job start Sat Apr 11 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47214 * 2 1 4 4 C 1.42902 * 113.99797 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46831 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47628 * 64.99421 * 5 4 3 7 7 C 1.42904 * 114.00267 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46832 * 30.00650 * 7 6 5 9 9 C 1.52995 * 109.47309 * 270.00146 * 7 6 5 10 10 C 1.50704 * 109.47027 * 150.00032 * 7 6 5 11 11 O 1.21283 * 120.00200 * 4.99977 * 10 7 6 12 12 N 1.34772 * 119.99783 * 184.99986 * 10 7 6 13 13 C 1.46502 * 120.00060 * 179.97438 * 12 10 7 14 14 H 1.09008 * 115.56336 * 350.71442 * 13 12 10 15 15 C 1.53032 * 117.50357 * 136.41417 * 13 12 10 16 16 C 1.52813 * 117.50755 * 205.00296 * 13 12 10 17 17 C 1.53186 * 117.71443 * 144.89960 * 16 13 12 18 18 C 1.53351 * 108.76242 * 158.87761 * 17 16 13 19 19 N 1.46851 * 108.81447 * 51.31682 * 18 17 16 20 20 C 1.36930 * 120.38315 * 123.07347 * 19 18 17 21 21 H 1.07999 * 120.00293 * 208.91780 * 20 19 18 22 22 C 1.38815 * 120.00045 * 28.91471 * 20 19 18 23 23 N 1.31618 * 120.00121 * 17.84422 * 22 20 19 24 24 Si 1.86794 * 120.00021 * 197.85119 * 22 20 19 25 25 H 1.48500 * 109.47550 * 89.99819 * 24 22 20 26 26 H 1.48501 * 109.46992 * 209.99613 * 24 22 20 27 27 H 1.48503 * 109.47250 * 329.99564 * 24 22 20 28 28 C 1.46843 * 119.23413 * 303.10188 * 19 18 17 29 29 C 1.53184 * 117.71036 * 0.13974 * 16 13 12 30 30 H 1.08997 * 109.47053 * 60.00521 * 1 2 3 31 31 H 1.08996 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47189 * 300.00596 * 1 2 3 33 33 H 1.08998 * 109.47189 * 239.99404 * 2 1 3 34 34 H 1.09009 * 109.46443 * 119.99557 * 2 1 3 35 35 H 1.08991 * 109.47396 * 59.99687 * 4 3 2 36 36 H 1.09006 * 109.46723 * 299.98945 * 4 3 2 37 37 H 1.09003 * 109.47021 * 304.99268 * 5 4 3 38 38 H 1.09002 * 109.47058 * 184.99938 * 5 4 3 39 39 H 1.08998 * 109.47466 * 180.02562 * 9 7 6 40 40 H 1.09004 * 109.47115 * 299.99838 * 9 7 6 41 41 H 1.09004 * 109.47060 * 60.00032 * 9 7 6 42 42 H 0.96999 * 119.99966 * 0.02562 * 12 10 7 43 43 H 1.08998 * 117.50342 * 0.02562 * 15 13 12 44 44 H 1.09001 * 117.53165 * 214.94442 * 15 13 12 45 45 H 1.08993 * 109.58775 * 39.09392 * 17 16 13 46 46 H 1.08995 * 109.58645 * 278.65571 * 17 16 13 47 47 H 1.08991 * 109.58172 * 171.11757 * 18 17 16 48 48 H 1.09008 * 109.58173 * 291.52389 * 18 17 16 49 49 H 0.96997 * 120.00457 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.57971 * 176.69642 * 28 19 18 51 51 H 1.09005 * 109.57494 * 297.09137 * 28 19 18 52 52 H 1.09004 * 109.58369 * 81.33646 * 29 16 13 53 53 H 1.08999 * 109.59307 * 320.90521 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9382 -0.0012 6 8 3.3986 3.5458 1.2197 7 6 3.7204 4.9344 1.3216 8 1 3.7325 5.3785 0.3263 9 6 5.0983 5.0925 1.9675 10 6 2.6857 5.6289 2.1690 11 8 1.8152 4.9835 2.7137 12 7 2.7276 6.9673 2.3215 13 6 1.7214 7.6427 3.1448 14 1 0.8860 7.0223 3.4697 15 6 2.2079 8.7313 4.1040 16 6 1.4332 9.1126 2.8428 17 6 -0.0067 9.6063 3.0147 18 6 0.0114 11.1301 3.1863 19 7 0.7965 11.7203 2.0946 20 6 0.2379 12.6588 1.2687 21 1 0.5807 12.7533 0.2489 22 6 -0.7691 13.4887 1.7421 23 7 -0.9502 13.6306 3.0380 24 14 -1.8674 14.4040 0.5399 25 1 -3.0507 13.5677 0.2149 26 1 -2.3165 15.6800 1.1526 27 1 -1.1083 14.6921 -0.7035 28 6 2.1873 11.2919 1.8985 29 6 2.2135 9.7715 1.7010 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8333 0.9766 -0.8907 36 1 3.8340 0.9764 0.8893 37 1 3.3494 3.4410 -0.8431 38 1 4.9083 3.0253 -0.0912 39 1 5.3436 6.1516 2.0457 40 1 5.0861 4.6484 2.9629 41 1 5.8467 4.5901 1.3546 42 1 3.4235 7.4836 1.8856 43 1 3.2765 8.9454 4.1221 44 1 1.6927 8.8279 5.0597 45 1 -0.4484 9.1443 3.8976 46 1 -0.5904 9.3449 2.1321 47 1 -1.0082 11.5137 3.1518 48 1 0.4675 11.3846 4.1431 49 1 -1.6540 14.2102 3.3689 50 1 2.5996 11.7821 1.0165 51 1 2.7781 11.5566 2.7755 52 1 1.7491 9.5188 0.7477 53 1 3.2449 9.4192 1.7122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490608321.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:31 Heat of formation + Delta-G solvation = -108.390005 kcal Electronic energy + Delta-G solvation = -30100.013309 eV Core-core repulsion = 25972.350907 eV Total energy + Delta-G solvation = -4127.662402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.30231 -40.06066 -39.22394 -38.19318 -37.08151 -34.67870 -33.59810 -32.94380 -31.94094 -31.52255 -29.96166 -29.73057 -26.25592 -25.68249 -24.05825 -23.69351 -23.56445 -23.12239 -22.34932 -21.37735 -19.81042 -18.65651 -18.34834 -18.04264 -17.76185 -17.19317 -16.79824 -16.65981 -16.32631 -15.99310 -15.64492 -15.56413 -15.30710 -15.01880 -14.86684 -14.72992 -14.32050 -14.14221 -13.86065 -13.73694 -13.70411 -13.35587 -13.24077 -13.11116 -13.06797 -12.87205 -12.66565 -12.59446 -12.51317 -12.28211 -12.24822 -12.14787 -12.00545 -11.85827 -11.77695 -11.38641 -11.25981 -11.04807 -10.77288 -10.54810 -10.48959 -10.43309 -9.67916 -8.61647 -7.85370 -5.31485 1.46197 1.48639 1.50975 1.56508 1.76689 2.51948 2.76802 2.86006 2.94310 3.29246 3.58645 3.66472 3.80937 3.87957 3.90698 3.98421 4.03896 4.12292 4.13980 4.15330 4.25056 4.31794 4.45761 4.48507 4.50955 4.53781 4.61483 4.66342 4.74017 4.80290 4.82182 4.85385 4.87717 4.91658 4.95223 5.00793 5.04241 5.08982 5.17489 5.22392 5.23842 5.32078 5.39364 5.48721 5.56847 5.66708 5.77864 6.07693 6.32868 6.42097 6.54316 7.17130 7.21689 7.89977 8.40776 9.19617 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.002046 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.232566 B =13679.170147 C =14431.941629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.416 6.416 4 C 0.058 3.942 5 C 0.054 3.946 6 O -0.385 6.385 7 C 0.073 3.927 8 H 0.114 0.886 9 C -0.163 4.163 10 C 0.510 3.490 11 O -0.575 6.575 12 N -0.680 5.680 13 C 0.083 3.917 14 H 0.111 0.889 15 C -0.166 4.166 16 C -0.113 4.113 17 C -0.096 4.096 18 C 0.182 3.818 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.066 0.934 22 C -0.052 4.052 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.289 1.289 26 H -0.296 1.296 27 H -0.267 1.267 28 C 0.145 3.855 29 C -0.083 4.083 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.416 0.584 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.001 0.999 49 H 0.249 0.751 50 H 0.056 0.944 51 H 0.019 0.981 52 H 0.056 0.944 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.680 -24.848 -6.719 30.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 O -0.337 6.337 4 C -0.018 4.018 5 C -0.022 4.022 6 O -0.304 6.304 7 C 0.012 3.988 8 H 0.132 0.868 9 C -0.221 4.221 10 C 0.297 3.703 11 O -0.453 6.453 12 N -0.332 5.332 13 C -0.024 4.024 14 H 0.129 0.871 15 C -0.204 4.204 16 C -0.114 4.114 17 C -0.135 4.135 18 C 0.056 3.944 19 N -0.332 5.332 20 C -0.391 4.391 21 H 0.084 0.916 22 C -0.248 4.248 23 N -0.579 5.579 24 Si 0.792 3.208 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.191 1.191 28 C 0.019 3.981 29 C -0.122 4.122 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.254 0.746 43 H 0.133 0.867 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.019 0.981 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.037 0.963 52 H 0.075 0.925 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.769 -25.170 -6.139 29.822 hybrid contribution -0.681 1.013 -0.405 1.286 sum 14.088 -24.157 -6.544 28.721 Atomic orbital electron populations 1.21779 0.93886 1.03231 1.02142 1.22618 0.95830 0.83026 1.00957 1.87983 1.22174 1.27900 1.95595 1.22719 0.81286 0.95687 1.02088 1.22931 1.00367 0.92695 0.86213 1.88086 1.81594 1.21301 1.39389 1.22013 0.93331 0.83470 0.99957 0.86824 1.22239 0.93576 1.04498 1.01772 1.21156 0.85718 0.82183 0.81260 1.90701 1.38815 1.66134 1.49636 1.45187 1.31172 1.06258 1.50611 1.21581 0.94324 0.88509 0.97959 0.87066 1.23616 1.01420 1.00848 0.94543 1.21807 0.96514 0.94729 0.98384 1.21641 0.94086 0.97547 1.00240 1.20512 0.96230 0.89070 0.88636 1.44237 1.08715 1.45109 1.35096 1.19515 1.17000 1.09942 0.92597 0.91613 1.25788 1.03144 0.98864 0.96966 1.70178 1.33853 1.40972 1.12947 0.85321 0.79201 0.77337 0.78940 1.21560 1.22236 1.19144 1.21020 0.85305 0.93376 0.98373 1.21469 0.98949 0.95782 0.95981 0.92406 0.88839 0.93638 0.91466 0.93036 0.88842 0.92529 0.92251 0.88039 0.88909 0.92719 0.88706 0.74586 0.86697 0.88380 0.91837 0.93546 0.92943 0.98128 0.94186 0.92522 0.96266 0.92506 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.83 6.66 71.98 0.48 1.31 16 3 O -0.42 -9.46 10.31 -144.34 -1.49 -10.95 16 4 C 0.06 0.88 6.32 71.98 0.45 1.34 16 5 C 0.05 0.80 6.13 71.98 0.44 1.24 16 6 O -0.38 -9.07 9.49 -125.59 -1.19 -10.27 16 7 C 0.07 1.35 3.13 29.85 0.09 1.44 16 8 H 0.11 1.43 7.79 -2.39 -0.02 1.41 16 9 C -0.16 -1.89 9.48 71.98 0.68 -1.21 16 10 C 0.51 13.80 7.18 87.66 0.63 14.42 16 11 O -0.57 -22.09 16.07 15.95 0.26 -21.84 16 12 N -0.68 -15.56 5.31 -442.76 -2.35 -17.91 16 13 C 0.08 2.34 6.14 44.94 0.28 2.62 16 14 H 0.11 3.71 7.40 -2.38 -0.02 3.69 16 15 C -0.17 -4.43 9.87 30.55 0.30 -4.13 16 16 C -0.11 -3.55 1.94 -52.17 -0.10 -3.66 16 17 C -0.10 -3.73 5.83 30.77 0.18 -3.55 16 18 C 0.18 8.82 5.40 86.43 0.47 9.29 16 19 N -0.61 -30.21 2.94 -698.89 -2.05 -32.26 16 20 C -0.26 -14.26 9.54 84.04 0.80 -13.46 16 21 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 22 C -0.05 -2.94 4.88 84.86 0.41 -2.52 16 23 N -0.93 -55.66 11.23 21.65 0.24 -55.42 16 24 Si 0.96 45.23 29.59 68.60 2.03 47.26 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 C 0.14 5.64 6.51 86.43 0.56 6.20 16 29 C -0.08 -2.49 5.37 30.77 0.17 -2.32 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.06 0.86 8.09 -2.39 -0.02 0.85 16 38 H 0.10 0.72 7.87 -2.39 -0.02 0.70 16 39 H 0.09 0.71 7.92 -2.39 -0.02 0.69 16 40 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.09 0.64 7.87 -2.38 -0.02 0.62 16 42 H 0.42 6.66 6.90 -92.71 -0.64 6.02 16 43 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 2.93 5.93 -2.39 -0.01 2.91 16 48 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 49 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 50 H 0.06 2.15 7.92 -2.39 -0.02 2.13 16 51 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 53 H 0.09 1.90 6.75 -2.39 -0.02 1.88 16 Total: -1.00 -78.95 423.65 2.27 -76.68 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.23 Total: 19.41 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.59 Total: 5.30 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -4.16 Total: -105.60 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -2.42 Total: -43.05 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -78.95 2.27 -76.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490608321.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.710 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds