Wall clock time and date at job start Sat Apr 11 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47018 * 2 1 4 4 C 1.42899 * 113.99761 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46939 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47079 * 65.00321 * 5 4 3 7 7 C 1.42900 * 113.99799 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47441 * 329.99701 * 7 6 5 9 9 C 1.53005 * 109.47066 * 90.00138 * 7 6 5 10 10 C 1.50699 * 109.47134 * 209.99471 * 7 6 5 11 11 O 1.21290 * 119.99956 * 0.02562 * 10 7 6 12 12 N 1.34779 * 120.00171 * 179.97438 * 10 7 6 13 13 C 1.46495 * 119.99884 * 180.02562 * 12 10 7 14 14 H 1.09005 * 115.55506 * 9.29672 * 13 12 10 15 15 C 1.53027 * 117.50146 * 223.61132 * 13 12 10 16 16 C 1.52818 * 117.50102 * 155.02661 * 13 12 10 17 17 C 1.53185 * 117.71402 * 359.85876 * 16 13 12 18 18 C 1.53347 * 108.77197 * 158.88768 * 17 16 13 19 19 N 1.46841 * 108.81619 * 51.30470 * 18 17 16 20 20 C 1.36943 * 120.38060 * 123.11858 * 19 18 17 21 21 H 1.07993 * 120.00075 * 330.66918 * 20 19 18 22 22 C 1.38810 * 119.99635 * 150.67160 * 20 19 18 23 23 N 1.31614 * 120.00195 * 342.83530 * 22 20 19 24 24 Si 1.86801 * 120.00023 * 162.83772 * 22 20 19 25 25 H 1.48507 * 109.47049 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47321 * 119.99739 * 24 22 20 27 27 H 1.48495 * 109.47430 * 240.00039 * 24 22 20 28 28 C 1.46849 * 119.23574 * 303.10456 * 19 18 17 29 29 C 1.53182 * 117.71469 * 215.09928 * 16 13 12 30 30 H 1.08994 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47069 * 299.99934 * 1 2 3 32 32 H 1.08995 * 109.47264 * 59.99760 * 1 2 3 33 33 H 1.08993 * 109.46400 * 240.00068 * 2 1 3 34 34 H 1.08998 * 109.46829 * 120.00486 * 2 1 3 35 35 H 1.09004 * 109.47061 * 60.00586 * 4 3 2 36 36 H 1.09000 * 109.47177 * 300.00288 * 4 3 2 37 37 H 1.09002 * 109.46964 * 305.00367 * 5 4 3 38 38 H 1.09002 * 109.46656 * 185.00357 * 5 4 3 39 39 H 1.09009 * 109.46908 * 299.99829 * 9 7 6 40 40 H 1.08998 * 109.47347 * 59.99505 * 9 7 6 41 41 H 1.08993 * 109.47117 * 180.02562 * 9 7 6 42 42 H 0.96997 * 119.99815 * 0.02562 * 12 10 7 43 43 H 1.09001 * 117.50400 * 359.97438 * 15 13 12 44 44 H 1.08997 * 117.50459 * 145.05220 * 15 13 12 45 45 H 1.09003 * 109.59000 * 278.67720 * 17 16 13 46 46 H 1.09005 * 109.58391 * 39.10262 * 17 16 13 47 47 H 1.09002 * 109.58163 * 291.51101 * 18 17 16 48 48 H 1.08998 * 109.58087 * 171.10772 * 18 17 16 49 49 H 0.96998 * 120.00038 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.57826 * 297.10300 * 28 19 18 51 51 H 1.08996 * 109.69242 * 176.76801 * 28 19 18 52 52 H 1.08999 * 109.58890 * 320.89858 * 29 16 13 53 53 H 1.08995 * 109.59121 * 81.33108 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3977 3.5450 1.2222 7 6 3.7194 4.9335 1.3253 8 1 4.6318 5.1377 0.7650 9 6 2.5715 5.7669 0.7519 10 6 3.9278 5.2948 2.7734 11 8 3.8126 4.4466 3.6327 12 7 4.2431 6.5602 3.1136 13 6 4.4462 6.9112 4.5214 14 1 4.4813 6.0712 5.2151 15 6 3.8211 8.2153 5.0218 16 6 5.3339 8.1170 4.8270 17 6 5.9485 8.8679 3.6417 18 6 6.3311 10.2811 4.0975 19 7 7.1388 10.1820 5.3199 20 6 8.3918 10.7324 5.3686 21 1 8.9824 10.8112 4.4678 22 6 8.9029 11.1890 6.5757 23 7 8.0948 11.4108 7.5907 24 14 10.7375 11.4886 6.7598 25 1 11.4223 11.1666 5.4820 26 1 10.9744 12.9141 7.1021 27 1 11.2743 10.6241 7.8412 28 6 6.5873 9.4862 6.4895 29 6 6.2100 8.0568 6.0821 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8340 0.9764 -0.8892 36 1 3.8333 0.9766 0.8908 37 1 3.3498 3.4417 -0.8407 38 1 4.9083 3.0254 -0.0880 39 1 2.4207 5.5056 -0.2956 40 1 1.6591 5.5628 1.3122 41 1 2.8171 6.8259 0.8300 42 1 4.3356 7.2385 2.4264 43 1 3.2591 8.8122 4.3035 44 1 3.4455 8.2333 6.0448 45 1 6.8387 8.3414 3.2974 46 1 5.2217 8.9294 2.8316 47 1 5.4280 10.8560 4.3022 48 1 6.9102 10.7728 3.3159 49 1 8.4519 11.7301 8.4341 50 1 5.6999 10.0118 6.8423 51 1 7.3331 9.4549 7.2837 52 1 5.6568 7.5802 6.8914 53 1 7.1143 7.4867 5.8695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490608322.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:36 Heat of formation + Delta-G solvation = -86.959402 kcal Electronic energy + Delta-G solvation = -29958.521722 eV Core-core repulsion = 25831.788621 eV Total energy + Delta-G solvation = -4126.733101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.21225 -38.96655 -38.33726 -37.31013 -35.45105 -33.46281 -32.43334 -31.70149 -31.03143 -29.97314 -29.13577 -28.24240 -24.89498 -24.34139 -23.12762 -22.89475 -22.46813 -21.92037 -20.85160 -20.23375 -18.25352 -17.53496 -17.50097 -17.15663 -16.45723 -16.21586 -15.90645 -15.41604 -15.08999 -14.79476 -14.63206 -14.18351 -14.06177 -13.77681 -13.53152 -13.40559 -13.13791 -13.07764 -12.94682 -12.70851 -12.63056 -12.58209 -12.23229 -11.96213 -11.75272 -11.63411 -11.58796 -11.56441 -11.31972 -11.22065 -10.96265 -10.74702 -10.43276 -10.31462 -10.17305 -9.96526 -9.94651 -9.72735 -9.66742 -9.54010 -9.32001 -8.45885 -8.44560 -6.63691 -5.79107 -3.23075 2.54022 2.69854 3.30426 3.36531 3.44753 3.46576 3.63301 4.18240 4.45621 4.49168 4.61446 4.64414 4.69174 4.73954 4.82075 4.88514 4.98448 4.99342 5.01915 5.06986 5.14396 5.14789 5.22730 5.35780 5.39037 5.39465 5.45175 5.49458 5.56839 5.63805 5.77810 5.81298 5.87833 6.06663 6.07529 6.10383 6.28874 6.43585 6.55990 6.61238 6.64904 6.70103 6.76507 6.84191 6.90110 6.96031 7.37198 7.49892 7.68198 7.79553 8.21926 8.46546 9.21710 9.85127 10.41830 11.28545 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.001803 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.684224 B =15524.425677 C =15731.719107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.065 3.935 5 C 0.061 3.939 6 O -0.347 6.347 7 C 0.071 3.929 8 H 0.087 0.913 9 C -0.169 4.169 10 C 0.516 3.484 11 O -0.521 6.521 12 N -0.693 5.693 13 C 0.070 3.930 14 H 0.132 0.868 15 C -0.182 4.182 16 C -0.096 4.096 17 C -0.097 4.097 18 C 0.150 3.850 19 N -0.589 5.589 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.173 3.827 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.400 0.600 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.253 0.747 50 H 0.018 0.982 51 H 0.090 0.910 52 H 0.051 0.949 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 -17.422 -17.484 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.265 6.265 7 C 0.010 3.990 8 H 0.104 0.896 9 C -0.227 4.227 10 C 0.301 3.699 11 O -0.396 6.396 12 N -0.345 5.345 13 C -0.035 4.035 14 H 0.149 0.851 15 C -0.220 4.220 16 C -0.098 4.098 17 C -0.137 4.137 18 C 0.023 3.977 19 N -0.311 5.311 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.047 3.953 29 C -0.145 4.145 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.036 0.964 51 H 0.108 0.892 52 H 0.070 0.930 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.553 -17.938 -16.567 27.456 hybrid contribution 1.224 0.443 -0.395 1.360 sum -11.329 -17.496 -16.961 26.873 Atomic orbital electron populations 1.21735 0.93704 1.02153 1.03264 1.22457 0.95754 0.83865 0.99928 1.87965 1.20442 1.26225 1.95387 1.22489 0.82303 0.95361 1.00988 1.22646 0.98383 0.92823 0.87738 1.88124 1.80026 1.20695 1.37680 1.21880 0.99082 0.84087 0.93980 0.89561 1.22231 0.99027 0.99454 1.02011 1.20309 0.76798 0.82410 0.90405 1.90715 1.49340 1.48411 1.51103 1.45326 1.70778 1.10109 1.08295 1.21898 1.05775 0.93027 0.82817 0.85056 1.23532 0.96561 0.99530 1.02404 1.21961 0.91471 0.97444 0.98892 1.21634 0.98902 0.99072 0.94077 1.20837 0.94408 0.92109 0.90345 1.43970 1.15048 1.62504 1.09618 1.19221 0.90568 1.33729 0.94807 0.91794 1.25058 0.98011 0.98787 0.97702 1.70032 1.32948 1.48101 1.03423 0.86257 0.85565 0.77420 0.77722 1.20276 1.21745 1.21543 1.20757 0.97594 0.86309 0.90603 1.21884 0.97616 1.01747 0.93295 0.91176 0.91642 0.91946 0.93625 0.93307 0.91776 0.92149 0.92205 0.91536 0.91181 0.90924 0.91003 0.76486 0.89045 0.88314 0.91772 0.93663 0.96303 0.92758 0.93668 0.96352 0.89189 0.92992 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.38 -3.97 10.31 -40.08 -0.41 -4.38 16 4 C 0.07 0.55 6.32 37.16 0.23 0.78 16 5 C 0.06 0.52 6.13 37.16 0.23 0.75 16 6 O -0.35 -4.33 9.49 -59.73 -0.57 -4.90 16 7 C 0.07 0.75 3.14 -27.88 -0.09 0.66 16 8 H 0.09 0.68 7.79 -51.93 -0.40 0.28 16 9 C -0.17 -1.40 9.42 37.16 0.35 -1.05 16 10 C 0.52 7.22 7.23 -10.98 -0.08 7.14 16 11 O -0.52 -9.68 16.07 -14.36 -0.23 -9.91 16 12 N -0.69 -8.73 5.24 -53.88 -0.28 -9.01 16 13 C 0.07 1.04 6.14 -68.01 -0.42 0.62 16 14 H 0.13 2.15 7.40 -51.93 -0.38 1.77 16 15 C -0.18 -2.63 9.86 -26.80 -0.26 -2.90 16 16 C -0.10 -1.57 1.94 -154.49 -0.30 -1.87 16 17 C -0.10 -1.57 5.37 -26.46 -0.14 -1.72 16 18 C 0.15 3.01 6.51 -3.68 -0.02 2.98 16 19 N -0.59 -14.41 2.94 -172.26 -0.51 -14.92 16 20 C -0.25 -6.85 9.54 -15.06 -0.14 -6.99 16 21 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 22 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 23 N -0.90 -25.90 11.21 55.49 0.62 -25.28 16 24 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.17 4.06 5.39 -3.67 -0.02 4.04 16 29 C -0.11 -2.02 5.83 -26.46 -0.15 -2.17 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 38 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 39 H 0.07 0.48 7.87 -51.92 -0.41 0.07 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.47 7.57 -51.93 -0.39 0.08 16 42 H 0.40 4.03 6.54 -40.82 -0.27 3.76 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 1.07 7.92 -51.93 -0.41 0.65 16 49 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 52 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 53 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 422.85 15.07 6.37 6.37 Total: -1.00 -33.75 422.85 -9.95 -43.70 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -9.64 Total: 1.53 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -0.28 Total: 0.32 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.17 Total: -49.21 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.21 Total: -19.19 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.75 -9.95 -43.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490608322.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.256 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds