Wall clock time and date at job start Sat Apr 11 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42897 * 109.47018 * 2 1 4 4 C 1.42899 * 113.99761 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46939 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47079 * 65.00321 * 5 4 3 7 7 C 1.42900 * 113.99799 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47441 * 329.99701 * 7 6 5 9 9 C 1.53005 * 109.47066 * 90.00138 * 7 6 5 10 10 C 1.50699 * 109.47134 * 209.99471 * 7 6 5 11 11 O 1.21290 * 119.99956 * 0.02562 * 10 7 6 12 12 N 1.34779 * 120.00171 * 179.97438 * 10 7 6 13 13 C 1.46495 * 119.99884 * 180.02562 * 12 10 7 14 14 H 1.09005 * 115.55506 * 9.29672 * 13 12 10 15 15 C 1.53027 * 117.50146 * 223.61132 * 13 12 10 16 16 C 1.52818 * 117.50102 * 155.02661 * 13 12 10 17 17 C 1.53185 * 117.71402 * 359.85876 * 16 13 12 18 18 C 1.53347 * 108.77197 * 158.88768 * 17 16 13 19 19 N 1.46841 * 108.81619 * 51.30470 * 18 17 16 20 20 C 1.36943 * 120.38060 * 123.11858 * 19 18 17 21 21 H 1.07993 * 120.00075 * 330.66918 * 20 19 18 22 22 C 1.38810 * 119.99635 * 150.67160 * 20 19 18 23 23 N 1.31614 * 120.00195 * 342.83530 * 22 20 19 24 24 Si 1.86801 * 120.00023 * 162.83772 * 22 20 19 25 25 H 1.48507 * 109.47049 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47321 * 119.99739 * 24 22 20 27 27 H 1.48495 * 109.47430 * 240.00039 * 24 22 20 28 28 C 1.46849 * 119.23574 * 303.10456 * 19 18 17 29 29 C 1.53182 * 117.71469 * 215.09928 * 16 13 12 30 30 H 1.08994 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47069 * 299.99934 * 1 2 3 32 32 H 1.08995 * 109.47264 * 59.99760 * 1 2 3 33 33 H 1.08993 * 109.46400 * 240.00068 * 2 1 3 34 34 H 1.08998 * 109.46829 * 120.00486 * 2 1 3 35 35 H 1.09004 * 109.47061 * 60.00586 * 4 3 2 36 36 H 1.09000 * 109.47177 * 300.00288 * 4 3 2 37 37 H 1.09002 * 109.46964 * 305.00367 * 5 4 3 38 38 H 1.09002 * 109.46656 * 185.00357 * 5 4 3 39 39 H 1.09009 * 109.46908 * 299.99829 * 9 7 6 40 40 H 1.08998 * 109.47347 * 59.99505 * 9 7 6 41 41 H 1.08993 * 109.47117 * 180.02562 * 9 7 6 42 42 H 0.96997 * 119.99815 * 0.02562 * 12 10 7 43 43 H 1.09001 * 117.50400 * 359.97438 * 15 13 12 44 44 H 1.08997 * 117.50459 * 145.05220 * 15 13 12 45 45 H 1.09003 * 109.59000 * 278.67720 * 17 16 13 46 46 H 1.09005 * 109.58391 * 39.10262 * 17 16 13 47 47 H 1.09002 * 109.58163 * 291.51101 * 18 17 16 48 48 H 1.08998 * 109.58087 * 171.10772 * 18 17 16 49 49 H 0.96998 * 120.00038 * 180.02562 * 23 22 20 50 50 H 1.08994 * 109.57826 * 297.10300 * 28 19 18 51 51 H 1.08996 * 109.69242 * 176.76801 * 28 19 18 52 52 H 1.08999 * 109.58890 * 320.89858 * 29 16 13 53 53 H 1.08995 * 109.59121 * 81.33108 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3977 3.5450 1.2222 7 6 3.7194 4.9335 1.3253 8 1 4.6318 5.1377 0.7650 9 6 2.5715 5.7669 0.7519 10 6 3.9278 5.2948 2.7734 11 8 3.8126 4.4466 3.6327 12 7 4.2431 6.5602 3.1136 13 6 4.4462 6.9112 4.5214 14 1 4.4813 6.0712 5.2151 15 6 3.8211 8.2153 5.0218 16 6 5.3339 8.1170 4.8270 17 6 5.9485 8.8679 3.6417 18 6 6.3311 10.2811 4.0975 19 7 7.1388 10.1820 5.3199 20 6 8.3918 10.7324 5.3686 21 1 8.9824 10.8112 4.4678 22 6 8.9029 11.1890 6.5757 23 7 8.0948 11.4108 7.5907 24 14 10.7375 11.4886 6.7598 25 1 11.4223 11.1666 5.4820 26 1 10.9744 12.9141 7.1021 27 1 11.2743 10.6241 7.8412 28 6 6.5873 9.4862 6.4895 29 6 6.2100 8.0568 6.0821 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8340 0.9764 -0.8892 36 1 3.8333 0.9766 0.8908 37 1 3.3498 3.4417 -0.8407 38 1 4.9083 3.0254 -0.0880 39 1 2.4207 5.5056 -0.2956 40 1 1.6591 5.5628 1.3122 41 1 2.8171 6.8259 0.8300 42 1 4.3356 7.2385 2.4264 43 1 3.2591 8.8122 4.3035 44 1 3.4455 8.2333 6.0448 45 1 6.8387 8.3414 3.2974 46 1 5.2217 8.9294 2.8316 47 1 5.4280 10.8560 4.3022 48 1 6.9102 10.7728 3.3159 49 1 8.4519 11.7301 8.4341 50 1 5.6999 10.0118 6.8423 51 1 7.3331 9.4549 7.2837 52 1 5.6568 7.5802 6.8914 53 1 7.1143 7.4867 5.8695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490608322.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:35 Heat of formation + Delta-G solvation = -108.209955 kcal Electronic energy + Delta-G solvation = -29959.443215 eV Core-core repulsion = 25831.788621 eV Total energy + Delta-G solvation = -4127.654594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.31078 -40.06025 -39.22379 -38.18660 -37.07844 -34.70155 -33.60461 -32.93304 -31.93641 -31.51339 -29.95632 -29.70530 -26.25353 -25.70290 -24.05242 -23.67944 -23.56436 -23.12850 -22.35966 -21.36595 -19.80760 -18.66911 -18.30873 -18.04778 -17.79533 -17.23902 -16.79098 -16.67580 -16.28566 -15.94149 -15.64055 -15.49241 -15.31613 -15.07622 -14.90788 -14.72619 -14.42691 -14.14906 -13.80444 -13.72565 -13.59977 -13.32040 -13.24266 -13.16142 -13.08644 -12.87123 -12.64055 -12.59348 -12.50109 -12.31708 -12.23742 -12.16936 -11.99033 -11.85997 -11.77689 -11.37756 -11.25644 -11.03872 -10.76483 -10.57642 -10.49031 -10.43122 -9.68094 -8.60436 -7.85073 -5.31803 1.45789 1.48436 1.49249 1.58194 1.76166 2.52139 2.74418 2.85839 2.94486 3.30123 3.58418 3.66726 3.81343 3.88179 3.91492 3.97745 4.02361 4.12685 4.14537 4.15173 4.23920 4.33259 4.45105 4.49187 4.53294 4.54408 4.61655 4.64625 4.74586 4.78317 4.82129 4.85827 4.90429 4.91779 4.95231 5.03160 5.04770 5.09667 5.17906 5.22063 5.25929 5.32510 5.39887 5.48458 5.57213 5.67242 5.78757 6.07559 6.29654 6.42721 6.53238 7.17749 7.20075 7.90362 8.41236 9.20033 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.001803 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.684224 B =15524.425677 C =15731.719107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.060 3.940 5 C 0.055 3.945 6 O -0.385 6.385 7 C 0.074 3.926 8 H 0.119 0.881 9 C -0.164 4.164 10 C 0.512 3.488 11 O -0.575 6.575 12 N -0.679 5.679 13 C 0.084 3.916 14 H 0.113 0.887 15 C -0.169 4.169 16 C -0.112 4.112 17 C -0.083 4.083 18 C 0.144 3.856 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.066 0.934 22 C -0.051 4.051 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.293 1.293 28 C 0.182 3.818 29 C -0.096 4.096 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.416 0.584 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.018 0.982 48 H 0.056 0.944 49 H 0.249 0.751 50 H -0.001 1.001 51 H 0.052 0.948 52 H 0.063 0.937 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 -17.926 -20.662 30.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.329 6.329 4 C -0.017 4.017 5 C -0.021 4.021 6 O -0.304 6.304 7 C 0.013 3.987 8 H 0.137 0.863 9 C -0.221 4.221 10 C 0.299 3.701 11 O -0.454 6.454 12 N -0.332 5.332 13 C -0.023 4.023 14 H 0.131 0.869 15 C -0.207 4.207 16 C -0.113 4.113 17 C -0.122 4.122 18 C 0.019 3.981 19 N -0.331 5.331 20 C -0.391 4.391 21 H 0.084 0.916 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.220 1.220 28 C 0.056 3.944 29 C -0.135 4.135 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.254 0.746 43 H 0.132 0.868 44 H 0.116 0.884 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.036 0.964 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.017 0.983 51 H 0.071 0.929 52 H 0.082 0.918 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.930 -18.429 -19.809 29.987 hybrid contribution 1.305 0.574 0.573 1.537 sum -11.625 -17.855 -19.235 28.705 Atomic orbital electron populations 1.21760 0.93271 1.03255 1.02455 1.22634 0.96229 0.83075 1.00731 1.87927 1.21629 1.27761 1.95570 1.22664 0.81561 0.95727 1.01715 1.22903 0.99774 0.92671 0.86784 1.88088 1.80691 1.21811 1.39772 1.22003 1.01388 0.83849 0.91462 0.86315 1.22227 0.97128 1.00313 1.02476 1.21095 0.75372 0.81899 0.91730 1.90694 1.51764 1.49956 1.52948 1.45192 1.69979 1.10347 1.07651 1.21589 1.04522 0.92183 0.83964 0.86875 1.23619 0.94910 0.99061 1.03104 1.21807 0.92245 0.99420 0.97857 1.21474 0.99854 0.95937 0.94948 1.21021 0.93703 0.94790 0.88606 1.44230 1.15096 1.62735 1.11049 1.19552 0.91914 1.32778 0.94861 0.91604 1.25783 1.01763 0.99416 0.97630 1.70178 1.34515 1.49622 1.03696 0.85274 0.81036 0.76785 0.77760 1.19015 1.21940 1.21956 1.20498 0.95466 0.88643 0.89799 1.21642 0.98018 0.98405 0.95429 0.89157 0.93235 0.91899 0.91651 0.93597 0.88849 0.93514 0.90704 0.89466 0.89388 0.92984 0.88773 0.74574 0.86835 0.88408 0.92313 0.89310 0.96393 0.92515 0.94200 0.98267 0.92948 0.91835 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.41 -8.18 10.31 -144.34 -1.49 -9.67 16 4 C 0.06 0.91 6.32 71.98 0.45 1.37 16 5 C 0.05 0.81 6.13 71.98 0.44 1.25 16 6 O -0.38 -9.07 9.49 -125.56 -1.19 -10.26 16 7 C 0.07 1.35 3.14 29.85 0.09 1.45 16 8 H 0.12 1.38 7.79 -2.39 -0.02 1.36 16 9 C -0.16 -2.18 9.42 71.98 0.68 -1.50 16 10 C 0.51 13.45 7.23 87.66 0.63 14.09 16 11 O -0.58 -21.36 16.07 15.98 0.26 -21.10 16 12 N -0.68 -15.16 5.24 -442.77 -2.32 -17.48 16 13 C 0.08 2.32 6.14 44.94 0.28 2.60 16 14 H 0.11 3.66 7.40 -2.38 -0.02 3.64 16 15 C -0.17 -4.48 9.86 30.55 0.30 -4.18 16 16 C -0.11 -3.46 1.94 -52.17 -0.10 -3.56 16 17 C -0.08 -2.45 5.37 30.77 0.17 -2.29 16 18 C 0.14 5.58 6.51 86.43 0.56 6.15 16 19 N -0.61 -29.92 2.94 -698.91 -2.05 -31.97 16 20 C -0.26 -14.19 9.54 84.03 0.80 -13.39 16 21 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 22 C -0.05 -2.82 4.90 84.86 0.42 -2.40 16 23 N -0.93 -55.38 11.21 21.65 0.24 -55.14 16 24 Si 0.96 44.85 29.59 68.60 2.03 46.88 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 C 0.18 8.76 5.39 86.43 0.47 9.23 16 29 C -0.10 -3.66 5.83 30.77 0.18 -3.48 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 38 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.09 0.88 7.87 -2.38 -0.02 0.86 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 0.81 7.57 -2.39 -0.02 0.79 16 42 H 0.42 6.52 6.54 -92.71 -0.61 5.92 16 43 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 1.86 6.75 -2.38 -0.02 1.84 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.06 2.13 7.92 -2.39 -0.02 2.12 16 49 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 50 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 51 H 0.05 2.90 5.95 -2.39 -0.01 2.89 16 52 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 53 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.81 422.85 2.34 -74.47 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.27 Total: 18.91 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 6.59 Total: 5.37 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.13 Total: -104.59 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -2.42 Total: -41.03 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.81 2.34 -74.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490608322.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.742 kcal (2) G-P(sol) polarization free energy of solvation -76.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds