Wall clock time and date at job start Sat Apr 11 2020 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46695 * 2 1 4 4 C 1.42896 * 113.99654 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47291 * 29.99844 * 4 3 2 6 6 C 1.50704 * 109.47222 * 269.99911 * 4 3 2 7 7 O 1.21283 * 119.99603 * 355.00259 * 6 4 3 8 8 N 1.34770 * 120.00378 * 175.00316 * 6 4 3 9 9 C 1.46499 * 120.00316 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47328 * 179.97438 * 9 8 6 11 11 O 1.42901 * 110.64147 * 298.31366 * 10 9 8 12 12 C 1.55156 * 110.87335 * 175.05954 * 10 9 8 13 13 C 1.54908 * 101.58197 * 206.06318 * 12 10 9 14 14 N 1.47422 * 104.83357 * 37.01425 * 13 12 10 15 15 C 1.36934 * 125.65321 * 155.91756 * 14 13 12 16 16 H 1.07997 * 120.00156 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99339 * 359.94052 * 15 14 13 18 18 N 1.31619 * 120.00310 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99553 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47325 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47031 * 120.00517 * 19 17 15 22 22 H 1.48504 * 109.47085 * 240.00294 * 19 17 15 23 23 C 1.47031 * 108.70136 * 335.86884 * 14 13 12 24 24 C 1.52998 * 109.47022 * 150.00026 * 4 3 2 25 25 C 1.54266 * 110.03267 * 57.90685 * 24 4 3 26 26 C 1.54966 * 104.16102 * 217.13593 * 25 24 4 27 27 C 1.54889 * 102.77683 * 37.88818 * 26 25 24 28 28 C 1.53874 * 110.03322 * 300.69089 * 24 4 3 29 29 H 1.08999 * 109.47555 * 299.99915 * 1 2 3 30 30 H 1.08997 * 109.46920 * 60.00306 * 1 2 3 31 31 H 1.09006 * 109.46648 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47089 * 240.00243 * 2 1 3 33 33 H 1.08997 * 109.46920 * 119.99693 * 2 1 3 34 34 H 0.97000 * 119.99560 * 359.97438 * 8 6 4 35 35 H 1.08993 * 109.47057 * 59.99717 * 9 8 6 36 36 H 1.09000 * 109.47069 * 299.99751 * 9 8 6 37 37 H 0.96700 * 113.99903 * 61.68269 * 11 10 9 38 38 H 1.08999 * 111.00338 * 324.14259 * 12 10 9 39 39 H 1.09003 * 110.99778 * 87.99041 * 12 10 9 40 40 H 1.09000 * 110.36459 * 155.84880 * 13 12 10 41 41 H 1.08998 * 110.36772 * 278.17049 * 13 12 10 42 42 H 0.97000 * 119.99728 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.88059 * 241.64343 * 23 14 13 44 44 H 1.08994 * 109.87878 * 120.47623 * 23 14 13 45 45 H 1.08997 * 110.01714 * 179.29771 * 24 4 3 46 46 H 1.08996 * 110.48843 * 335.78132 * 25 24 4 47 47 H 1.09001 * 110.49111 * 98.42866 * 25 24 4 48 48 H 1.08996 * 110.72103 * 279.57256 * 26 25 24 49 49 H 1.09000 * 110.76634 * 156.21719 * 26 25 24 50 50 H 1.09003 * 110.48708 * 203.40633 * 27 26 25 51 51 H 1.08996 * 110.48795 * 80.76113 * 27 26 25 52 52 H 1.09005 * 110.03173 * 238.57164 * 28 24 4 53 53 H 1.09001 * 110.03077 * 359.94458 * 28 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9322 1.4997 1.4201 7 8 3.1434 1.5288 2.3409 8 7 5.2570 1.5026 1.6673 9 6 5.7444 1.5404 3.0483 10 6 7.2744 1.5351 3.0496 11 8 7.7745 0.3384 2.4497 12 6 7.8266 1.6993 4.4902 13 6 9.2137 2.3344 4.2211 14 7 8.9975 3.2441 3.0813 15 6 9.7622 4.3386 2.7774 16 1 9.5206 4.9440 1.9163 17 6 10.8477 4.6703 3.5766 18 7 11.1421 3.9325 4.6261 19 14 11.8906 6.1637 3.1625 20 1 11.3537 6.8197 1.9432 21 1 11.8549 7.1222 4.2963 22 1 13.2919 5.7368 2.9192 23 6 7.8253 2.7809 2.3242 24 6 3.8402 2.7459 -0.7218 25 6 3.1923 3.9661 -0.0354 26 6 2.8367 4.9157 -1.2073 27 6 2.3724 3.9359 -2.3134 28 6 3.3195 2.7268 -2.1696 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8878 1.4790 0.9308 35 1 5.3780 0.6667 3.5870 36 1 5.3835 2.4458 3.5363 37 1 7.5213 0.2275 1.5230 38 1 7.1971 2.3691 5.0759 39 1 7.9287 0.7319 4.9820 40 1 9.5506 2.8936 5.0940 41 1 9.9393 1.5643 3.9595 42 1 11.9008 4.1642 5.1843 43 1 8.1204 2.5181 1.3083 44 1 7.0661 3.5626 2.3015 45 1 4.9255 2.8472 -0.7166 46 1 2.2913 3.6683 0.5008 47 1 3.9003 4.4435 0.6420 48 1 3.7146 5.4751 -1.5304 49 1 2.0289 5.5912 -0.9258 50 1 2.4822 4.3917 -3.2974 51 1 1.3389 3.6330 -2.1454 52 1 4.1521 2.8197 -2.8671 53 1 2.7760 1.8011 -2.3588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500704218.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:45 Heat of formation + Delta-G solvation = -142.379287 kcal Electronic energy + Delta-G solvation = -31635.676734 eV Core-core repulsion = 27506.540447 eV Total energy + Delta-G solvation = -4129.136288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.55189 -40.30465 -38.97586 -37.88433 -36.80973 -35.35276 -34.01196 -32.88178 -31.47611 -30.80996 -29.66141 -29.51242 -27.62906 -26.47212 -24.90596 -23.75935 -22.47851 -21.85118 -21.37623 -21.31061 -20.59903 -19.17983 -18.86946 -17.89926 -17.67186 -16.81267 -16.75646 -16.62445 -16.44665 -16.11376 -15.91698 -15.60995 -15.46416 -15.11868 -14.72072 -14.54942 -14.34538 -14.12134 -13.95157 -13.90247 -13.54859 -13.31545 -13.16173 -12.92794 -12.84846 -12.80254 -12.37690 -12.37141 -12.29325 -12.09139 -11.99144 -11.93463 -11.89595 -11.78716 -11.63689 -11.61026 -11.51566 -11.35998 -11.27687 -10.95492 -10.75934 -10.24644 -10.20787 -8.91467 -7.78510 -5.23421 1.47000 1.47850 1.52204 1.58037 1.96164 2.48250 2.68874 3.13653 3.31531 3.40724 3.53224 3.64900 3.69064 3.76386 3.85822 3.90441 3.95303 4.06529 4.19145 4.29368 4.39434 4.46880 4.49003 4.58455 4.61179 4.63795 4.65391 4.71312 4.77210 4.78501 4.87729 4.92010 4.93117 4.96762 5.01594 5.04583 5.07378 5.11559 5.25574 5.28020 5.28894 5.34388 5.46075 5.47548 5.55070 5.59874 5.78529 6.08107 6.28156 6.45850 6.78123 7.08584 7.16043 7.75707 8.39291 9.23883 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002889 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.728326 B = 9688.260111 C =11149.428708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.086 3.914 5 H 0.117 0.883 6 C 0.491 3.509 7 O -0.570 6.570 8 N -0.713 5.713 9 C 0.121 3.879 10 C 0.127 3.873 11 O -0.553 6.553 12 C -0.122 4.122 13 C 0.161 3.839 14 N -0.622 5.622 15 C -0.237 4.237 16 H 0.084 0.916 17 C -0.069 4.069 18 N -0.950 5.950 19 Si 0.980 3.020 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.114 3.886 24 C -0.084 4.084 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.108 4.108 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.385 0.615 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.074 0.926 41 H -0.014 1.014 42 H 0.247 0.753 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.101 0.899 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.060 0.940 52 H 0.081 0.919 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 -7.568 -15.797 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 O -0.283 6.283 4 C 0.024 3.976 5 H 0.134 0.866 6 C 0.278 3.722 7 O -0.449 6.449 8 N -0.368 5.368 9 C -0.004 4.004 10 C 0.085 3.915 11 O -0.360 6.360 12 C -0.161 4.161 13 C 0.036 3.964 14 N -0.349 5.349 15 C -0.366 4.366 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.600 5.600 19 Si 0.809 3.191 20 H -0.188 1.188 21 H -0.219 1.219 22 H -0.220 1.220 23 C -0.011 4.011 24 C -0.103 4.103 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.155 4.155 28 C -0.145 4.145 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.234 0.766 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.004 0.996 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.119 0.881 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.079 0.921 52 H 0.100 0.900 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.616 -7.369 -14.504 25.484 hybrid contribution 1.117 0.634 -0.240 1.306 sum -18.499 -6.736 -14.744 24.596 Atomic orbital electron populations 1.21709 0.92828 1.03234 1.02510 1.22747 0.96637 0.83014 1.00400 1.88007 1.18523 1.27581 1.94176 1.22148 0.83592 1.01661 0.90149 0.86557 1.21971 0.81991 0.75056 0.93172 1.90693 1.56207 1.50281 1.47700 1.45890 1.07185 1.75059 1.08701 1.21707 0.92229 1.02494 0.83971 1.22176 0.90187 0.84309 0.94789 1.86601 1.78030 1.40826 1.30543 1.22902 0.97917 1.01387 0.93845 1.21637 0.91876 0.90634 0.92289 1.44706 1.31204 1.29300 1.29656 1.19492 1.06345 1.01906 1.08824 0.89802 1.25658 1.00280 1.02223 0.97933 1.70057 1.30142 1.41076 1.18702 0.84978 0.78017 0.78587 0.77549 1.18843 1.21943 1.22026 1.22115 0.89512 0.94573 0.94905 1.21987 1.01031 0.91384 0.95873 1.22350 0.99979 0.95764 0.97901 1.22485 1.00976 0.97391 0.95156 1.22290 0.99228 0.95444 0.98555 1.22092 0.99477 0.99254 0.93712 0.93537 0.91325 0.89250 0.90812 0.94721 0.75212 0.90676 0.91641 0.76556 0.89812 0.89643 0.90806 0.99601 0.94324 0.94346 0.94700 0.88056 0.92618 0.93374 0.91081 0.91970 0.90614 0.92127 0.89993 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.05 0.80 6.46 71.98 0.46 1.26 16 3 O -0.37 -7.68 7.98 -129.99 -1.04 -8.72 16 4 C 0.09 1.54 2.05 29.85 0.06 1.60 16 5 H 0.12 1.34 7.79 -2.39 -0.02 1.32 16 6 C 0.49 12.16 6.51 87.66 0.57 12.74 16 7 O -0.57 -19.51 16.51 15.95 0.26 -19.24 16 8 N -0.71 -15.60 5.14 -463.07 -2.38 -17.98 16 9 C 0.12 3.33 4.74 86.38 0.41 3.74 16 10 C 0.13 4.06 0.92 -9.60 -0.01 4.06 16 11 O -0.55 -16.53 13.09 -148.98 -1.95 -18.48 16 12 C -0.12 -4.60 6.26 31.99 0.20 -4.40 16 13 C 0.16 8.04 5.88 86.86 0.51 8.55 16 14 N -0.62 -31.47 3.39 -691.99 -2.35 -33.82 16 15 C -0.24 -13.06 10.27 84.03 0.86 -12.20 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 18 N -0.95 -56.83 10.09 21.65 0.22 -56.61 16 19 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 C 0.11 4.33 6.02 86.73 0.52 4.86 16 24 C -0.08 -1.37 2.79 -10.07 -0.03 -1.39 16 25 C -0.12 -2.62 5.65 31.70 0.18 -2.44 16 26 C -0.12 -2.13 6.91 31.91 0.22 -1.91 16 27 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 28 C -0.11 -1.37 6.21 31.32 0.19 -1.17 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.41 6.64 7.19 -92.71 -0.67 5.97 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 37 H 0.39 7.72 8.12 -74.06 -0.60 7.12 16 38 H 0.08 3.02 8.05 -2.39 -0.02 3.01 16 39 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.07 4.20 5.87 -2.39 -0.01 4.19 16 41 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.04 1.35 8.05 -2.39 -0.02 1.33 16 44 H 0.04 1.31 7.82 -2.39 -0.02 1.29 16 45 H 0.10 1.40 7.95 -2.39 -0.02 1.39 16 46 H 0.06 1.47 7.15 -2.39 -0.02 1.45 16 47 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 53 H 0.07 0.87 7.40 -2.39 -0.02 0.85 16 Total: -1.00 -74.78 413.94 0.00 -74.78 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.37 Total: 25.66 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.58 Total: 7.07 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.51 Total: -108.41 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -2.72 Total: -46.44 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.78 0.00 -74.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500704218.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.603 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds