Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47011 * 2 1 4 4 C 1.42902 * 114.00205 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47418 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47433 * 179.07030 * 5 4 3 7 7 C 1.50699 * 112.85101 * 300.49363 * 6 5 4 8 8 O 1.21282 * 120.00024 * 106.59559 * 7 6 5 9 9 N 1.34776 * 119.99866 * 286.59849 * 7 6 5 10 10 C 1.46496 * 120.00141 * 174.97297 * 9 7 6 11 11 C 1.52994 * 109.47547 * 185.56814 * 10 9 7 12 12 H 1.09007 * 109.70568 * 305.10335 * 11 10 9 13 13 C 1.53297 * 109.68281 * 184.57290 * 11 10 9 14 14 O 1.42959 * 109.21924 * 187.97165 * 13 11 10 15 15 C 1.42969 * 114.17051 * 62.58098 * 14 13 11 16 16 C 1.53298 * 109.21986 * 297.41977 * 15 14 13 17 17 N 1.47145 * 109.68275 * 65.64026 * 11 10 9 18 18 C 1.36936 * 120.98108 * 350.28450 * 17 11 10 19 19 H 1.08000 * 120.00016 * 322.67765 * 18 17 11 20 20 C 1.38819 * 119.99917 * 142.68399 * 18 17 11 21 21 N 1.31615 * 120.00252 * 154.19480 * 20 18 17 22 22 Si 1.86802 * 119.99800 * 334.18929 * 20 18 17 23 23 H 1.48498 * 109.47046 * 88.66029 * 22 20 18 24 24 H 1.48504 * 109.46831 * 208.66052 * 22 20 18 25 25 H 1.48503 * 109.47152 * 328.66359 * 22 20 18 26 26 C 1.53781 * 113.68801 * 71.76030 * 6 5 4 27 27 C 1.53778 * 87.08324 * 89.12642 * 26 6 5 28 28 C 1.53782 * 113.61305 * 169.29397 * 6 5 4 29 29 H 1.08996 * 109.47443 * 300.00500 * 1 2 3 30 30 H 1.08996 * 109.46865 * 60.00850 * 1 2 3 31 31 H 1.09004 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47443 * 239.99500 * 2 1 3 33 33 H 1.09004 * 109.46834 * 119.99524 * 2 1 3 34 34 H 1.09001 * 109.47006 * 59.99299 * 4 3 2 35 35 H 1.09008 * 109.46544 * 299.99544 * 4 3 2 36 36 H 1.09004 * 109.47320 * 59.07267 * 5 4 3 37 37 H 1.09002 * 109.46919 * 299.07600 * 5 4 3 38 38 H 0.97001 * 120.00294 * 354.97798 * 9 7 6 39 39 H 1.09002 * 109.46872 * 65.56645 * 10 9 7 40 40 H 1.09003 * 109.46994 * 305.57045 * 10 9 7 41 41 H 1.09001 * 109.50976 * 307.89706 * 13 11 10 42 42 H 1.08998 * 109.51632 * 67.99829 * 13 11 10 43 43 H 1.08997 * 109.51400 * 177.48851 * 15 14 13 44 44 H 1.09000 * 109.50830 * 57.33539 * 15 14 13 45 45 H 1.09000 * 109.67760 * 292.57433 * 16 15 14 46 46 H 1.08993 * 109.68193 * 172.02109 * 16 15 14 47 47 H 0.97000 * 120.00430 * 179.97438 * 21 20 18 48 48 H 1.08992 * 113.61531 * 203.67767 * 26 6 5 49 49 H 1.09003 * 113.61153 * 334.58145 * 26 6 5 50 50 H 1.09000 * 113.61525 * 270.88816 * 27 26 6 51 51 H 1.08995 * 113.61498 * 139.98032 * 27 26 6 52 52 H 1.08999 * 113.61528 * 25.35425 * 28 6 5 53 53 H 1.09003 * 113.60946 * 156.17353 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3504 3.0593 0.0216 7 6 5.9711 2.4085 1.2308 8 8 6.5696 1.3600 1.1150 9 7 5.8611 2.9915 2.4409 10 6 6.3675 2.3066 3.6328 11 6 5.9972 3.1119 4.8798 12 1 6.3621 4.1342 4.7790 13 6 6.6218 2.4608 6.1192 14 8 6.1216 3.1065 7.2925 15 6 4.7093 2.9787 7.4740 16 6 3.9868 3.6563 6.3040 17 7 4.5354 3.1217 5.0475 18 6 3.7099 2.6468 4.0636 19 1 3.9540 2.8165 3.0253 20 6 2.5591 1.9474 4.4007 21 7 1.5347 1.9285 3.5746 22 14 2.4647 1.0328 6.0268 23 1 1.9534 1.9467 7.0797 24 1 1.5474 -0.1270 5.8898 25 1 3.8182 0.5518 6.4035 26 6 6.0215 2.6628 -1.3040 27 6 5.8585 4.1300 -1.7346 28 6 5.8591 4.4870 -0.2388 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8333 0.9767 -0.8908 35 1 3.8340 0.9766 0.8893 36 1 3.4091 3.4259 0.8804 37 1 3.4362 3.4179 -0.8993 38 1 5.4465 3.8646 2.5228 39 1 7.4518 2.2168 3.5670 40 1 5.9239 1.3130 3.6969 41 1 6.3598 1.4031 6.1458 42 1 7.7059 2.5665 6.0788 43 1 4.4175 3.4576 8.4086 44 1 4.4404 1.9229 7.5055 45 1 4.1492 4.7333 6.3465 46 1 2.9194 3.4430 6.3586 47 1 0.7307 1.4395 3.8100 48 1 7.0606 2.3535 -1.1920 49 1 5.4330 1.9650 -1.8997 50 1 4.9110 4.3363 -2.2323 51 1 6.7176 4.5236 -2.2778 52 1 5.1395 5.2619 0.0255 53 1 6.8533 4.6768 0.1657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501779566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -76.433502 kcal Electronic energy + Delta-G solvation = -33030.943388 eV Core-core repulsion = 28904.666724 eV Total energy + Delta-G solvation = -4126.276664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.44682 -38.87218 -37.54980 -37.11834 -35.34376 -33.62540 -31.95557 -31.63139 -30.99884 -29.71764 -27.54293 -26.43889 -25.46171 -24.60300 -23.46030 -22.32983 -22.26507 -21.97338 -20.56006 -19.63636 -18.32993 -17.18989 -16.50147 -16.22497 -16.01740 -15.85425 -15.57789 -15.28430 -15.03702 -14.71019 -14.55142 -14.16325 -14.08344 -13.91289 -13.56483 -13.34408 -13.03932 -12.60373 -12.44273 -12.33462 -12.19574 -12.08511 -11.91435 -11.79898 -11.67782 -11.51982 -11.11429 -11.04742 -11.03278 -10.81639 -10.61883 -10.50485 -10.43993 -10.38080 -10.29644 -10.00822 -9.95249 -9.61574 -9.23972 -9.02851 -8.91851 -8.49468 -8.25270 -6.84587 -6.00239 -3.42758 3.15851 3.24235 3.41566 3.42707 3.74714 4.11033 4.30875 4.47648 4.59243 4.71994 4.74750 4.86922 4.97682 5.21922 5.34903 5.46919 5.47396 5.57799 5.58999 5.61743 5.64975 5.70897 5.72170 5.78194 5.81543 5.82843 5.88214 5.90656 5.93544 5.96418 5.97155 6.08481 6.11157 6.12491 6.17821 6.25121 6.28114 6.36346 6.44850 6.46653 6.54474 6.56539 6.64618 6.67327 6.78023 7.06366 7.61026 7.83534 7.92611 8.12677 8.32164 8.79844 8.87696 9.65136 10.06924 11.09909 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.005355 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.253394 B = 5227.415319 C = 7371.031723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 O -0.372 6.372 4 C 0.076 3.924 5 C -0.085 4.085 6 C -0.098 4.098 7 C 0.530 3.470 8 O -0.556 6.556 9 N -0.698 5.698 10 C 0.138 3.862 11 C 0.125 3.875 12 H 0.048 0.952 13 C 0.048 3.952 14 O -0.386 6.386 15 C 0.029 3.971 16 C 0.104 3.896 17 N -0.601 5.601 18 C -0.285 4.285 19 H 0.104 0.896 20 C 0.046 3.954 21 N -0.869 5.869 22 Si 0.854 3.146 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.272 1.272 26 C -0.114 4.114 27 C -0.140 4.140 28 C -0.127 4.127 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.406 0.594 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.078 0.922 47 H 0.261 0.739 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.083 0.917 51 H 0.067 0.933 52 H 0.077 0.923 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 3.077 -6.332 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.009 4.009 3 O -0.291 6.291 4 C -0.001 4.001 5 C -0.122 4.122 6 C -0.101 4.101 7 C 0.316 3.684 8 O -0.435 6.435 9 N -0.348 5.348 10 C 0.014 3.986 11 C 0.019 3.981 12 H 0.066 0.934 13 C -0.031 4.031 14 O -0.304 6.304 15 C -0.049 4.049 16 C -0.022 4.022 17 N -0.328 5.328 18 C -0.412 4.412 19 H 0.121 0.879 20 C -0.156 4.156 21 N -0.508 5.508 22 Si 0.684 3.316 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.198 1.198 26 C -0.152 4.152 27 C -0.177 4.177 28 C -0.164 4.164 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.242 0.758 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.086 0.914 52 H 0.096 0.904 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.640 2.521 -6.340 8.852 hybrid contribution -0.495 -0.840 1.146 1.505 sum 5.145 1.681 -5.194 7.501 Atomic orbital electron populations 1.21680 0.94278 1.01293 1.03134 1.22251 0.95235 0.84456 0.99007 1.87886 1.20471 1.25490 1.95213 1.22231 0.81689 0.96584 0.99601 1.21149 0.90201 0.96562 1.04326 1.22025 0.96452 0.97579 0.94042 1.20186 0.79427 0.84755 0.84076 1.90632 1.43458 1.23476 1.85975 1.45904 1.60235 1.22633 1.05997 1.21155 0.96697 0.97501 0.83297 1.21584 0.86781 0.97094 0.92647 0.93425 1.22991 0.97648 0.96271 0.86221 1.87814 1.22396 1.76895 1.43333 1.23346 0.81755 1.00591 0.99193 1.21832 0.98246 0.96206 0.85879 1.44508 0.99480 1.71858 1.16964 1.19157 1.02166 1.30837 0.89067 0.87929 1.25545 0.96603 0.97534 0.95936 1.69926 1.02913 1.41240 1.36723 0.87444 0.77206 0.80812 0.86186 1.21309 1.23124 1.19807 1.22839 1.01296 0.96532 0.94491 1.22826 1.02094 0.96681 0.96089 1.22954 1.01642 0.95110 0.96729 0.91037 0.92626 0.92061 0.94925 0.93542 0.94743 0.92916 0.88844 0.90815 0.75845 0.92575 0.90515 0.93248 0.89612 0.89678 0.93269 0.94527 0.90366 0.92898 0.89521 0.91057 0.89843 0.91389 0.90392 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 37.16 0.38 -1.86 16 2 C 0.07 1.18 6.66 37.16 0.25 1.42 16 3 O -0.37 -7.43 10.34 -35.23 -0.36 -7.79 16 4 C 0.08 1.41 5.63 37.15 0.21 1.62 16 5 C -0.08 -1.39 4.95 -26.73 -0.13 -1.52 16 6 C -0.10 -1.44 0.80 -154.85 -0.12 -1.57 16 7 C 0.53 9.51 5.62 -10.99 -0.06 9.45 16 8 O -0.56 -11.68 16.36 5.56 0.09 -11.59 16 9 N -0.70 -12.26 3.33 -60.30 -0.20 -12.46 16 10 C 0.14 2.50 4.56 -4.05 -0.02 2.48 16 11 C 0.13 2.29 3.15 -67.43 -0.21 2.08 16 12 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 13 C 0.05 0.83 6.29 37.31 0.23 1.07 16 14 O -0.39 -7.25 10.74 -35.23 -0.38 -7.63 16 15 C 0.03 0.55 6.57 37.31 0.25 0.80 16 16 C 0.10 2.14 5.58 -3.53 -0.02 2.12 16 17 N -0.60 -12.96 2.60 -164.30 -0.43 -13.38 16 18 C -0.28 -6.98 8.35 -15.06 -0.13 -7.10 16 19 H 0.10 2.55 4.78 -52.49 -0.25 2.30 16 20 C 0.05 1.23 5.11 -17.43 -0.09 1.14 16 21 N -0.87 -24.07 13.97 55.49 0.78 -23.30 16 22 Si 0.85 20.89 23.72 -169.99 -4.03 16.86 16 23 H -0.29 -6.75 6.53 56.52 0.37 -6.38 16 24 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 25 H -0.27 -6.67 6.13 56.52 0.35 -6.33 16 26 C -0.11 -1.49 6.74 -25.92 -0.17 -1.66 16 27 C -0.14 -1.48 7.73 -25.92 -0.20 -1.68 16 28 C -0.13 -1.49 7.10 -25.92 -0.18 -1.68 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.58 7.18 -51.93 -0.37 0.21 16 35 H 0.05 1.16 7.36 -51.92 -0.38 0.77 16 36 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 37 H 0.07 1.07 7.30 -51.93 -0.38 0.69 16 38 H 0.41 6.90 7.57 -40.82 -0.31 6.59 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.64 7.81 -51.93 -0.41 1.24 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.05 1.02 4.96 -51.93 -0.26 0.76 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.75 4.77 -51.93 -0.25 1.50 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.09 1.18 7.87 -51.93 -0.41 0.78 16 49 H 0.07 0.92 7.18 -51.93 -0.37 0.55 16 50 H 0.08 0.83 7.60 -51.93 -0.39 0.44 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 52 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 53 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -29.70 400.28 -7.85 -37.55 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -9.32 Total: 10.62 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.02 Total: 5.09 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.15 Total: -49.14 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.65 Total: -27.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.03 Total: 16.86 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.70 -7.85 -37.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501779566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.882 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds