Wall clock time and date at job start Sat Apr 11 2020 06:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47011 * 2 1 4 4 C 1.42902 * 114.00205 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47418 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47433 * 179.07030 * 5 4 3 7 7 C 1.50699 * 112.85101 * 300.49363 * 6 5 4 8 8 O 1.21282 * 120.00024 * 106.59559 * 7 6 5 9 9 N 1.34776 * 119.99866 * 286.59849 * 7 6 5 10 10 C 1.46496 * 120.00141 * 174.97297 * 9 7 6 11 11 C 1.52994 * 109.47547 * 185.56814 * 10 9 7 12 12 H 1.09007 * 109.70568 * 305.10335 * 11 10 9 13 13 C 1.53297 * 109.68281 * 184.57290 * 11 10 9 14 14 O 1.42959 * 109.21924 * 187.97165 * 13 11 10 15 15 C 1.42969 * 114.17051 * 62.58098 * 14 13 11 16 16 C 1.53298 * 109.21986 * 297.41977 * 15 14 13 17 17 N 1.47145 * 109.68275 * 65.64026 * 11 10 9 18 18 C 1.36936 * 120.98108 * 350.28450 * 17 11 10 19 19 H 1.08000 * 120.00016 * 322.67765 * 18 17 11 20 20 C 1.38819 * 119.99917 * 142.68399 * 18 17 11 21 21 N 1.31615 * 120.00252 * 154.19480 * 20 18 17 22 22 Si 1.86802 * 119.99800 * 334.18929 * 20 18 17 23 23 H 1.48498 * 109.47046 * 88.66029 * 22 20 18 24 24 H 1.48504 * 109.46831 * 208.66052 * 22 20 18 25 25 H 1.48503 * 109.47152 * 328.66359 * 22 20 18 26 26 C 1.53781 * 113.68801 * 71.76030 * 6 5 4 27 27 C 1.53778 * 87.08324 * 89.12642 * 26 6 5 28 28 C 1.53782 * 113.61305 * 169.29397 * 6 5 4 29 29 H 1.08996 * 109.47443 * 300.00500 * 1 2 3 30 30 H 1.08996 * 109.46865 * 60.00850 * 1 2 3 31 31 H 1.09004 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47443 * 239.99500 * 2 1 3 33 33 H 1.09004 * 109.46834 * 119.99524 * 2 1 3 34 34 H 1.09001 * 109.47006 * 59.99299 * 4 3 2 35 35 H 1.09008 * 109.46544 * 299.99544 * 4 3 2 36 36 H 1.09004 * 109.47320 * 59.07267 * 5 4 3 37 37 H 1.09002 * 109.46919 * 299.07600 * 5 4 3 38 38 H 0.97001 * 120.00294 * 354.97798 * 9 7 6 39 39 H 1.09002 * 109.46872 * 65.56645 * 10 9 7 40 40 H 1.09003 * 109.46994 * 305.57045 * 10 9 7 41 41 H 1.09001 * 109.50976 * 307.89706 * 13 11 10 42 42 H 1.08998 * 109.51632 * 67.99829 * 13 11 10 43 43 H 1.08997 * 109.51400 * 177.48851 * 15 14 13 44 44 H 1.09000 * 109.50830 * 57.33539 * 15 14 13 45 45 H 1.09000 * 109.67760 * 292.57433 * 16 15 14 46 46 H 1.08993 * 109.68193 * 172.02109 * 16 15 14 47 47 H 0.97000 * 120.00430 * 179.97438 * 21 20 18 48 48 H 1.08992 * 113.61531 * 203.67767 * 26 6 5 49 49 H 1.09003 * 113.61153 * 334.58145 * 26 6 5 50 50 H 1.09000 * 113.61525 * 270.88816 * 27 26 6 51 51 H 1.08995 * 113.61498 * 139.98032 * 27 26 6 52 52 H 1.08999 * 113.61528 * 25.35425 * 28 6 5 53 53 H 1.09003 * 113.60946 * 156.17353 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 -0.0012 6 6 5.3504 3.0593 0.0216 7 6 5.9711 2.4085 1.2308 8 8 6.5696 1.3600 1.1150 9 7 5.8611 2.9915 2.4409 10 6 6.3675 2.3066 3.6328 11 6 5.9972 3.1119 4.8798 12 1 6.3621 4.1342 4.7790 13 6 6.6218 2.4608 6.1192 14 8 6.1216 3.1065 7.2925 15 6 4.7093 2.9787 7.4740 16 6 3.9868 3.6563 6.3040 17 7 4.5354 3.1217 5.0475 18 6 3.7099 2.6468 4.0636 19 1 3.9540 2.8165 3.0253 20 6 2.5591 1.9474 4.4007 21 7 1.5347 1.9285 3.5746 22 14 2.4647 1.0328 6.0268 23 1 1.9534 1.9467 7.0797 24 1 1.5474 -0.1270 5.8898 25 1 3.8182 0.5518 6.4035 26 6 6.0215 2.6628 -1.3040 27 6 5.8585 4.1300 -1.7346 28 6 5.8591 4.4870 -0.2388 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8333 0.9767 -0.8908 35 1 3.8340 0.9766 0.8893 36 1 3.4091 3.4259 0.8804 37 1 3.4362 3.4179 -0.8993 38 1 5.4465 3.8646 2.5228 39 1 7.4518 2.2168 3.5670 40 1 5.9239 1.3130 3.6969 41 1 6.3598 1.4031 6.1458 42 1 7.7059 2.5665 6.0788 43 1 4.4175 3.4576 8.4086 44 1 4.4404 1.9229 7.5055 45 1 4.1492 4.7333 6.3465 46 1 2.9194 3.4430 6.3586 47 1 0.7307 1.4395 3.8100 48 1 7.0606 2.3535 -1.1920 49 1 5.4330 1.9650 -1.8997 50 1 4.9110 4.3363 -2.2323 51 1 6.7176 4.5236 -2.2778 52 1 5.1395 5.2619 0.0255 53 1 6.8533 4.6768 0.1657 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501779566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:10 Heat of formation + Delta-G solvation = -96.677659 kcal Electronic energy + Delta-G solvation = -33031.821241 eV Core-core repulsion = 28904.666724 eV Total energy + Delta-G solvation = -4127.154517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73677 -40.38758 -38.99545 -38.48610 -36.93408 -35.29901 -33.56338 -33.18750 -32.57146 -31.04162 -29.24041 -27.83139 -26.50311 -25.93898 -25.25435 -23.81207 -23.65637 -23.38436 -21.85910 -21.24649 -19.72970 -18.80213 -17.93660 -17.63119 -17.55354 -17.43802 -17.10464 -16.80841 -16.40035 -16.18899 -15.99618 -15.72651 -15.55928 -15.36566 -15.10882 -14.78724 -14.69489 -14.19446 -14.01265 -13.74965 -13.51408 -13.36721 -13.24678 -13.18081 -13.06702 -12.88559 -12.83414 -12.52483 -12.34936 -12.25173 -12.19153 -12.02222 -11.94316 -11.90345 -11.72131 -11.34132 -11.31297 -11.12777 -10.88814 -10.48405 -10.47189 -10.39567 -9.78940 -8.65145 -8.04897 -5.41827 1.23778 1.38006 1.40626 1.72420 2.36310 2.45993 2.74471 2.84447 3.07881 3.26065 3.46907 3.64520 3.85071 3.92769 3.94774 4.02760 4.10342 4.12043 4.19395 4.22398 4.26181 4.27714 4.35574 4.44815 4.45349 4.49034 4.50942 4.61335 4.65819 4.69386 4.76325 4.83229 4.85800 4.87517 4.89018 5.01102 5.02680 5.04281 5.07900 5.14436 5.19449 5.23190 5.27224 5.34749 5.53737 5.60630 5.98077 6.12037 6.35095 6.38067 6.68705 6.98573 7.36243 7.67653 8.13989 9.07158 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.005355 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.253394 B = 5227.415319 C = 7371.031723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 O -0.393 6.393 4 C 0.081 3.919 5 C -0.073 4.073 6 C -0.105 4.105 7 C 0.524 3.476 8 O -0.592 6.592 9 N -0.695 5.695 10 C 0.143 3.857 11 C 0.128 3.872 12 H 0.071 0.929 13 C 0.048 3.952 14 O -0.384 6.384 15 C 0.033 3.967 16 C 0.100 3.900 17 N -0.615 5.615 18 C -0.257 4.257 19 H 0.096 0.904 20 C -0.002 4.002 21 N -0.905 5.905 22 Si 0.893 3.107 23 H -0.271 1.271 24 H -0.324 1.324 25 H -0.275 1.275 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.119 4.119 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.054 0.946 35 H 0.007 0.993 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.409 0.591 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.031 0.969 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.029 0.971 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.253 0.747 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.087 0.913 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 4.943 -7.056 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.016 4.016 3 O -0.312 6.312 4 C 0.004 3.996 5 C -0.110 4.110 6 C -0.108 4.108 7 C 0.312 3.688 8 O -0.473 6.473 9 N -0.345 5.345 10 C 0.018 3.982 11 C 0.023 3.977 12 H 0.088 0.912 13 C -0.030 4.030 14 O -0.302 6.302 15 C -0.045 4.045 16 C -0.025 4.025 17 N -0.342 5.342 18 C -0.387 4.387 19 H 0.113 0.887 20 C -0.200 4.200 21 N -0.548 5.548 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.254 1.254 25 H -0.201 1.201 26 C -0.153 4.153 27 C -0.159 4.159 28 C -0.156 4.156 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.245 0.755 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.144 0.856 43 H 0.135 0.865 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.109 0.891 52 H 0.105 0.895 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.352 4.419 -7.023 11.086 hybrid contribution -0.931 -1.434 1.366 2.189 sum 6.421 2.985 -5.657 9.063 Atomic orbital electron populations 1.21664 0.92573 1.02954 1.02462 1.22441 0.96705 0.83536 0.98918 1.87865 1.21123 1.27014 1.95206 1.22217 0.81152 0.98014 0.98203 1.21047 0.91355 0.94717 1.03918 1.22122 0.95115 1.00209 0.93361 1.20831 0.78765 0.84266 0.84924 1.90602 1.45172 1.24982 1.86566 1.45912 1.59981 1.22662 1.05945 1.21071 0.97812 0.95508 0.83795 1.21707 0.84604 0.98277 0.93124 0.91156 1.23097 0.99774 0.95009 0.85162 1.87830 1.21941 1.76797 1.43661 1.23319 0.81886 0.99465 0.99819 1.21885 0.97286 0.97350 0.85963 1.44648 1.00876 1.71818 1.16822 1.19250 1.01449 1.28263 0.89691 0.88666 1.25956 0.97178 0.99245 0.97670 1.70024 1.03386 1.43144 1.38209 0.86794 0.76372 0.79669 0.84789 1.19793 1.25392 1.20051 1.22866 1.00572 0.98595 0.93253 1.22789 1.03711 0.94021 0.95343 1.22986 1.02025 0.92864 0.97735 0.93891 0.90953 0.89282 0.92078 0.96437 0.92798 0.97482 0.92069 0.88223 0.75453 0.90114 0.94521 0.95007 0.85648 0.86530 0.95258 0.92695 0.92486 0.93772 0.90188 0.91082 0.88650 0.89146 0.89481 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 10.28 71.98 0.74 -3.56 16 2 C 0.06 2.18 6.66 71.98 0.48 2.65 16 3 O -0.39 -16.21 10.34 -148.98 -1.54 -17.75 16 4 C 0.08 3.11 5.63 71.98 0.41 3.51 16 5 C -0.07 -2.39 4.95 30.59 0.15 -2.24 16 6 C -0.10 -3.02 0.80 -52.40 -0.04 -3.06 16 7 C 0.52 19.03 5.62 87.66 0.49 19.52 16 8 O -0.59 -25.43 16.36 -3.04 -0.05 -25.48 16 9 N -0.70 -24.43 3.33 -463.07 -1.54 -25.97 16 10 C 0.14 5.13 4.56 86.38 0.39 5.52 16 11 C 0.13 4.48 3.15 44.97 0.14 4.62 16 12 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 13 C 0.05 1.57 6.29 72.08 0.45 2.02 16 14 O -0.38 -13.30 10.74 -148.98 -1.60 -14.90 16 15 C 0.03 1.19 6.57 72.08 0.47 1.66 16 16 C 0.10 3.99 5.58 86.35 0.48 4.47 16 17 N -0.61 -26.15 2.60 -673.74 -1.75 -27.90 16 18 C -0.26 -12.92 8.35 84.04 0.70 -12.22 16 19 H 0.10 4.91 4.78 -2.91 -0.01 4.90 16 20 C 0.00 -0.10 5.11 84.86 0.43 0.33 16 21 N -0.91 -52.75 13.97 21.65 0.30 -52.45 16 22 Si 0.89 44.54 23.72 68.60 1.63 46.16 16 23 H -0.27 -12.71 6.53 99.48 0.65 -12.06 16 24 H -0.32 -17.15 7.11 99.48 0.71 -16.45 16 25 H -0.27 -13.61 6.13 99.48 0.61 -13.00 16 26 C -0.12 -2.81 6.74 31.12 0.21 -2.60 16 27 C -0.12 -2.15 7.73 31.12 0.24 -1.91 16 28 C -0.12 -2.49 7.10 31.12 0.22 -2.27 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 1.83 7.18 -2.39 -0.02 1.81 16 35 H 0.01 0.32 7.36 -2.38 -0.02 0.30 16 36 H 0.06 2.41 7.75 -2.39 -0.02 2.39 16 37 H 0.10 2.74 7.30 -2.39 -0.02 2.73 16 38 H 0.41 13.72 7.57 -92.71 -0.70 13.02 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.04 1.62 7.81 -2.39 -0.02 1.60 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 44 H 0.03 1.18 4.96 -2.39 -0.01 1.17 16 45 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.06 2.52 4.77 -2.39 -0.01 2.51 16 47 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 48 H 0.08 2.08 7.87 -2.39 -0.02 2.06 16 49 H 0.07 1.72 7.18 -2.39 -0.02 1.70 16 50 H 0.10 1.51 7.60 -2.39 -0.02 1.50 16 51 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.09 1.70 8.10 -2.39 -0.02 1.68 16 53 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 Total: -1.00 -68.11 400.28 1.46 -66.64 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.04 Total: 35.19 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 5.98 Total: 16.45 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -2.99 Total: -106.32 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -3.19 Total: -58.13 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.63 Total: 46.16 kcal Total: -68.11 1.46 -66.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501779566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.033 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds