Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99831 * 2 1 4 4 C 1.50698 * 120.00288 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.47271 * 4.99244 * 4 2 1 6 6 C 1.53005 * 109.46791 * 244.99926 * 4 2 1 7 7 C 1.50703 * 109.46957 * 174.01714 * 6 4 2 8 8 O 1.21282 * 119.99742 * 4.57627 * 7 6 4 9 9 N 1.34771 * 120.00073 * 184.57745 * 7 6 4 10 10 C 1.46496 * 120.00155 * 185.10739 * 9 7 6 11 11 C 1.53006 * 109.54642 * 300.77082 * 10 9 7 12 12 N 1.46505 * 109.46498 * 305.41564 * 11 10 9 13 13 C 1.36938 * 119.99609 * 185.01671 * 12 11 10 14 14 H 1.08008 * 119.99843 * 4.98270 * 13 12 11 15 15 C 1.38811 * 119.99979 * 184.97952 * 13 12 11 16 16 N 1.31625 * 119.99861 * 184.81246 * 15 13 12 17 17 Si 1.86798 * 120.00167 * 4.81064 * 15 13 12 18 18 H 1.48502 * 109.47086 * 84.86864 * 17 15 13 19 19 H 1.48496 * 109.47299 * 204.87424 * 17 15 13 20 20 H 1.48502 * 109.46878 * 324.87144 * 17 15 13 21 21 C 1.53180 * 109.54644 * 180.59351 * 10 9 7 22 22 C 1.53287 * 109.05935 * 297.03157 * 21 10 9 23 23 O 1.42902 * 109.45961 * 302.44084 * 22 21 10 24 24 C 1.42904 * 114.09844 * 61.16366 * 23 22 21 25 25 C 1.53094 * 109.41271 * 298.84056 * 24 23 22 26 26 O 1.42898 * 109.47222 * 124.99997 * 4 2 1 27 27 C 1.42899 * 113.99684 * 266.22237 * 26 4 2 28 28 C 1.53000 * 109.47124 * 184.93517 * 27 26 4 29 29 H 1.07994 * 120.00064 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99789 * 179.73006 * 1 2 3 31 31 H 1.08997 * 109.47570 * 90.00301 * 3 2 1 32 32 H 1.09003 * 109.47141 * 210.00149 * 3 2 1 33 33 H 1.09002 * 109.47235 * 329.99922 * 3 2 1 34 34 H 1.09000 * 109.47376 * 294.01071 * 6 4 2 35 35 H 1.08993 * 109.47431 * 54.01706 * 6 4 2 36 36 H 0.97005 * 120.00033 * 5.11292 * 9 7 6 37 37 H 1.08999 * 109.47133 * 65.41122 * 11 10 9 38 38 H 1.08995 * 109.47167 * 185.41891 * 11 10 9 39 39 H 0.96999 * 120.00368 * 5.01502 * 12 11 10 40 40 H 0.97002 * 119.99716 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.52350 * 57.01557 * 21 10 9 42 42 H 1.09001 * 109.52487 * 177.21124 * 21 10 9 43 43 H 1.09003 * 109.45656 * 182.45120 * 22 21 10 44 44 H 1.08994 * 109.46837 * 62.44890 * 22 21 10 45 45 H 1.08996 * 109.48545 * 178.86094 * 24 23 22 46 46 H 1.08997 * 109.49272 * 58.82347 * 24 23 22 47 47 H 1.08999 * 109.52096 * 297.69995 * 25 24 23 48 48 H 1.09004 * 109.57540 * 177.54410 * 25 24 23 49 49 H 1.08998 * 109.47750 * 304.94101 * 27 26 4 50 50 H 1.09004 * 109.46938 * 64.93551 * 27 26 4 51 51 H 1.09005 * 109.46832 * 175.02865 * 28 27 26 52 52 H 1.09000 * 109.47374 * 295.02066 * 28 27 26 53 53 H 1.08992 * 109.47281 * 55.02335 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 1 1.3586 -2.1316 -0.0904 6 6 2.8465 -1.4424 1.3068 7 6 3.4811 -2.8077 1.3711 8 8 3.3926 -3.5627 0.4261 9 7 4.1471 -3.1898 2.4788 10 6 4.8585 -4.4702 2.5007 11 6 3.8715 -5.6089 2.2355 12 7 2.7665 -5.5303 3.1942 13 6 1.8093 -6.5093 3.2174 14 1 1.9114 -7.3793 2.5856 15 6 0.7079 -6.3835 4.0528 16 7 -0.1630 -7.3659 4.1460 17 14 0.4618 -4.8199 5.0449 18 1 -0.2318 -3.8073 4.2090 19 1 -0.3606 -5.1191 6.2445 20 1 1.7826 -4.2903 5.4698 21 6 5.5140 -4.6689 3.8708 22 6 6.5568 -3.5673 4.0914 23 8 7.5192 -3.6046 3.0357 24 6 6.9690 -3.3786 1.7363 25 6 5.9445 -4.4715 1.4204 26 8 2.9709 -1.3307 -1.1042 27 6 2.4422 -1.9528 -2.2770 28 6 3.5328 -2.0341 -3.3470 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0044 31 1 2.2452 1.6198 1.0276 32 1 3.0159 1.1748 -0.5139 33 1 1.4743 2.0648 -0.5138 34 1 3.6231 -0.6786 1.3472 35 1 2.1688 -1.3166 2.1511 36 1 4.1552 -2.6169 3.2616 37 1 3.4801 -5.5217 1.2220 38 1 4.3819 -6.5654 2.3470 39 1 2.7129 -4.7848 3.8126 40 1 -0.9329 -7.2779 4.7295 41 1 4.7534 -4.6146 4.6497 42 1 6.0014 -5.6433 3.9036 43 1 7.0581 -3.7277 5.0460 44 1 6.0629 -2.5958 4.0990 45 1 7.7670 -3.4030 0.9943 46 1 6.4803 -2.4046 1.7127 47 1 6.4406 -5.4419 1.4037 48 1 5.4914 -4.2773 0.4482 49 1 2.0981 -2.9575 -2.0317 50 1 1.6058 -1.3645 -2.6546 51 1 3.1565 -2.5867 -4.2080 52 1 3.8143 -1.0275 -3.6561 53 1 4.4043 -2.5460 -2.9392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502626342.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -122.952613 kcal Electronic energy + Delta-G solvation = -32620.927017 eV Core-core repulsion = 28492.633133 eV Total energy + Delta-G solvation = -4128.293884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81018 -40.11350 -38.94591 -37.28347 -36.11807 -35.50100 -33.58413 -32.85414 -32.23879 -32.08655 -30.70940 -28.48576 -28.21746 -25.48787 -25.04891 -24.49362 -23.66319 -22.97791 -21.76219 -20.48004 -19.85265 -19.67599 -18.19020 -17.87210 -17.24207 -16.98538 -16.78275 -16.66494 -16.45147 -16.14441 -15.80600 -15.54178 -15.34748 -15.05336 -14.90906 -14.76938 -14.46910 -14.32079 -14.01724 -13.92765 -13.78159 -13.53829 -13.37191 -13.14369 -13.08100 -12.92937 -12.83429 -12.71284 -12.59520 -12.50853 -12.30668 -12.17910 -11.97285 -11.88862 -11.81997 -11.70331 -11.35098 -11.09055 -10.67633 -10.50089 -10.42745 -10.10522 -9.91388 -9.26054 -8.05135 -5.37891 1.16219 1.27877 1.36989 1.43988 1.79706 2.20257 2.44878 2.77270 2.96502 3.25003 3.46533 3.58463 3.73586 3.83632 3.90722 3.91038 3.95573 4.08814 4.14413 4.21009 4.27185 4.34215 4.39694 4.46081 4.49947 4.53562 4.66302 4.70276 4.74496 4.78759 4.80314 4.82246 4.84644 4.86819 4.94243 4.99654 5.06587 5.07551 5.12229 5.13920 5.17301 5.20079 5.24777 5.60049 5.63307 5.73567 5.80705 6.17596 6.25495 6.30577 6.65281 7.05454 7.41052 7.79255 8.04072 9.16992 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007758 B = 0.005051 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3608.358467 B = 5542.206344 C = 7446.107094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.150 4.150 3 C -0.109 4.109 4 C 0.141 3.859 5 H 0.042 0.958 6 C -0.133 4.133 7 C 0.514 3.486 8 O -0.553 6.553 9 N -0.716 5.716 10 C 0.180 3.820 11 C 0.149 3.851 12 N -0.741 5.741 13 C -0.233 4.233 14 H 0.043 0.957 15 C -0.065 4.065 16 N -0.985 5.985 17 Si 0.957 3.043 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.243 1.243 21 C -0.151 4.151 22 C 0.065 3.935 23 O -0.393 6.393 24 C 0.074 3.926 25 C -0.154 4.154 26 O -0.374 6.374 27 C 0.062 3.938 28 C -0.140 4.140 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.408 0.592 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.367 0.633 40 H 0.258 0.742 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.027 0.973 50 H 0.049 0.951 51 H 0.081 0.919 52 H 0.070 0.930 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 21.646 -6.069 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.150 4.150 3 C -0.165 4.165 4 C 0.083 3.917 5 H 0.060 0.940 6 C -0.172 4.172 7 C 0.301 3.699 8 O -0.430 6.430 9 N -0.370 5.370 10 C 0.094 3.906 11 C 0.022 3.978 12 N -0.387 5.387 13 C -0.364 4.364 14 H 0.061 0.939 15 C -0.256 4.256 16 N -0.636 5.636 17 Si 0.783 3.217 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.167 1.167 21 C -0.190 4.190 22 C -0.012 4.012 23 O -0.312 6.312 24 C -0.002 4.002 25 C -0.193 4.193 26 O -0.293 6.293 27 C -0.014 4.014 28 C -0.197 4.197 29 H 0.140 0.860 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.245 0.755 37 H 0.044 0.956 38 H 0.038 0.962 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.132 0.868 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.046 0.954 50 H 0.068 0.932 51 H 0.100 0.900 52 H 0.089 0.911 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.351 20.954 -6.798 25.255 hybrid contribution -1.613 -0.217 0.760 1.796 sum 10.738 20.737 -6.038 24.120 Atomic orbital electron populations 1.23932 0.95234 1.02581 1.00603 1.22261 0.95526 0.96457 1.00797 1.20751 1.00223 0.92623 1.02923 1.20706 0.90524 0.93983 0.86532 0.93990 1.21866 1.02158 0.94758 0.98462 1.20885 0.77633 0.89188 0.82150 1.90657 1.59412 1.54897 1.38064 1.45962 1.53545 1.21055 1.16438 1.20404 0.90619 0.83038 0.96558 1.21099 0.88267 0.95578 0.92896 1.42361 1.27596 1.27098 1.41602 1.18970 0.99615 0.98667 1.19171 0.93856 1.25566 0.96729 1.01507 1.01830 1.69914 1.15554 1.34308 1.43822 0.85403 0.78847 0.79634 0.77776 1.20488 1.22160 1.16723 1.22452 0.99329 1.01833 0.95354 1.22734 0.90100 0.97084 0.91255 1.87909 1.34733 1.92944 1.15626 1.22493 0.96431 0.96475 0.84822 1.22413 0.96268 1.01298 0.99350 1.87817 1.40619 1.79649 1.21219 1.22447 0.97239 0.95575 0.86150 1.21670 0.98174 1.02876 0.96987 0.86006 0.89710 0.90064 0.91604 0.91073 0.85322 0.86669 0.75490 0.95635 0.96245 0.79921 0.93366 0.90290 0.90124 0.86800 0.91457 0.87743 0.92493 0.90696 0.90667 0.95441 0.93236 0.90016 0.91141 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 13.91 67.78 0.94 -2.78 16 2 C -0.15 -3.06 5.08 -16.48 -0.08 -3.15 16 3 C -0.11 -1.64 9.75 71.24 0.69 -0.95 16 4 C 0.14 3.63 1.88 29.85 0.06 3.69 16 5 H 0.04 1.35 7.17 -2.39 -0.02 1.33 16 6 C -0.13 -2.99 5.24 29.85 0.16 -2.83 16 7 C 0.51 15.29 7.13 87.66 0.62 15.92 16 8 O -0.55 -21.09 11.72 11.61 0.14 -20.95 16 9 N -0.72 -18.70 3.59 -422.38 -1.51 -20.21 16 10 C 0.18 5.36 0.32 3.73 0.00 5.36 16 11 C 0.15 6.21 4.84 86.38 0.42 6.63 16 12 N -0.74 -35.30 4.94 -343.43 -1.70 -37.00 16 13 C -0.23 -13.88 10.47 84.03 0.88 -13.00 16 14 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16 15 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 16 N -0.99 -64.59 13.97 21.65 0.30 -64.29 16 17 Si 0.96 44.96 27.76 68.60 1.90 46.87 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 20 H -0.24 -9.74 6.51 99.48 0.65 -9.09 16 21 C -0.15 -3.85 4.83 30.75 0.15 -3.70 16 22 C 0.06 1.24 6.67 72.08 0.48 1.72 16 23 O -0.39 -8.89 10.77 -148.98 -1.60 -10.50 16 24 C 0.07 1.61 6.68 72.01 0.48 2.09 16 25 C -0.15 -4.20 4.77 30.69 0.15 -4.05 16 26 O -0.37 -10.11 8.71 -134.33 -1.17 -11.28 16 27 C 0.06 1.62 6.53 71.98 0.47 2.09 16 28 C -0.14 -2.94 10.28 71.98 0.74 -2.20 16 29 H 0.12 1.88 8.04 -2.91 -0.02 1.86 16 30 H 0.08 1.92 7.84 -2.91 -0.02 1.90 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.08 7.72 -2.39 -0.02 1.06 16 33 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.13 2.14 8.07 -2.39 -0.02 2.13 16 35 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.41 8.03 7.51 -92.70 -0.70 7.33 16 37 H 0.03 1.23 6.15 -2.39 -0.01 1.22 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.37 15.98 4.58 -92.71 -0.42 15.55 16 40 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 41 H 0.08 2.11 7.43 -2.39 -0.02 2.10 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 1.02 7.08 -2.39 -0.02 1.01 16 45 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 46 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.07 2.36 6.36 -2.39 -0.02 2.35 16 49 H 0.03 0.85 7.98 -2.39 -0.02 0.83 16 50 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 51 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.43 413.71 2.69 -74.74 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -0.29 Total: 41.25 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 6.62 Total: 1.38 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -2.91 Total: -121.50 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -2.64 Total: -42.73 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.87 kcal Total: -77.43 2.69 -74.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502626342.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.214 kcal (2) G-P(sol) polarization free energy of solvation -77.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds