Wall clock time and date at job start Sat Apr 11 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47286 * 2 1 4 4 C 1.42900 * 114.00124 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.91488 * 26.09330 * 4 3 2 6 6 C 1.55123 * 111.16141 * 262.16741 * 4 3 2 7 7 N 1.47427 * 104.94305 * 205.13213 * 6 4 3 8 8 C 1.34771 * 125.64724 * 204.04195 * 7 6 4 9 9 O 1.21285 * 120.00015 * 179.97438 * 8 7 6 10 10 C 1.50700 * 120.00143 * 359.95339 * 8 7 6 11 11 C 1.53001 * 109.47216 * 180.02562 * 10 8 7 12 12 C 1.53173 * 109.54375 * 294.55564 * 11 10 8 13 13 C 1.53090 * 109.16469 * 183.15301 * 12 11 10 14 14 O 1.42901 * 109.41406 * 57.60797 * 13 12 11 15 15 C 1.42902 * 114.09737 * 298.83957 * 14 13 12 16 16 C 1.53091 * 109.41303 * 61.16376 * 15 14 13 17 17 C 1.47023 * 108.70238 * 23.99871 * 7 6 4 18 18 C 1.54321 * 107.27061 * 358.94570 * 17 7 6 19 19 H 1.09001 * 110.72319 * 96.34469 * 18 17 7 20 20 C 1.53001 * 110.71867 * 219.43871 * 18 17 7 21 21 N 1.46497 * 109.47393 * 291.15939 * 20 18 17 22 22 C 1.36935 * 120.00298 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99995 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00267 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00268 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00127 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 60.00531 * 26 24 22 28 28 H 1.48503 * 109.47399 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47295 * 300.00628 * 26 24 22 30 30 H 1.09005 * 109.46740 * 60.00422 * 1 2 3 31 31 H 1.08998 * 109.47428 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47025 * 300.00798 * 1 2 3 33 33 H 1.09001 * 109.47539 * 239.99317 * 2 1 3 34 34 H 1.09005 * 109.46740 * 119.99578 * 2 1 3 35 35 H 1.08998 * 110.42289 * 86.20122 * 6 4 3 36 36 H 1.08998 * 110.20726 * 323.95137 * 6 4 3 37 37 H 1.09006 * 109.47168 * 300.00282 * 10 8 7 38 38 H 1.09000 * 109.47115 * 60.00286 * 10 8 7 39 39 H 1.09002 * 109.54307 * 54.82493 * 11 10 8 40 40 H 1.08998 * 109.52258 * 303.06321 * 12 11 10 41 41 H 1.09003 * 109.52263 * 63.24750 * 12 11 10 42 42 H 1.09004 * 109.47784 * 297.62317 * 13 12 11 43 43 H 1.09003 * 109.48182 * 177.59060 * 13 12 11 44 44 H 1.08998 * 109.48601 * 301.17756 * 15 14 13 45 45 H 1.09008 * 109.47915 * 181.13857 * 15 14 13 46 46 H 1.09000 * 109.52058 * 182.48464 * 16 15 14 47 47 H 1.08996 * 109.52680 * 62.29210 * 16 15 14 48 48 H 1.08995 * 109.88273 * 239.52621 * 17 7 6 49 49 H 1.09006 * 109.88096 * 118.36004 * 17 7 6 50 50 H 1.09001 * 109.47183 * 171.15376 * 20 18 17 51 51 H 1.09004 * 109.47147 * 51.15785 * 20 18 17 52 52 H 0.96992 * 120.00013 * 359.97438 * 21 20 18 53 53 H 0.97000 * 119.99327 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8912 0.5792 -0.4469 6 6 3.9730 1.7011 1.4339 7 7 5.2626 2.3892 1.2419 8 6 6.2864 2.3977 2.1183 9 8 7.3057 2.9997 1.8543 10 6 6.1646 1.6597 3.4266 11 6 7.4558 1.8289 4.2298 12 6 8.6103 1.1413 3.4946 13 6 9.8804 1.2476 4.3427 14 8 9.6471 0.6584 5.6235 15 6 8.6099 1.2905 6.3763 16 6 7.2887 1.1858 5.6100 17 6 5.2472 3.0637 -0.0644 18 6 3.8866 2.7543 -0.7237 19 1 3.1793 3.5646 -0.5469 20 6 4.0563 2.5042 -2.2235 21 7 4.4270 3.7558 -2.8885 22 6 4.6341 3.7768 -4.2420 23 1 4.5247 2.8705 -4.8191 24 6 4.9848 4.9629 -4.8721 25 7 5.1187 6.0673 -4.1688 26 14 5.2681 4.9913 -6.7183 27 1 4.0276 4.5676 -7.4160 28 1 5.6296 6.3678 -7.1425 29 1 6.3728 4.0611 -7.0640 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.1224 0.7519 1.9486 36 1 3.2853 2.3337 1.9951 37 1 5.3275 2.0644 3.9955 38 1 5.9935 0.6010 3.2319 39 1 7.6764 2.8900 4.3462 40 1 8.3662 0.0912 3.3344 41 1 8.7723 1.6293 2.5335 42 1 10.1467 2.2971 4.4685 43 1 10.6954 0.7229 3.8442 44 1 8.8595 2.3405 6.5287 45 1 8.5095 0.7965 7.3429 46 1 6.5055 1.7056 6.1617 47 1 7.0179 0.1366 5.4925 48 1 6.0562 2.6830 -0.6877 49 1 5.3566 4.1395 0.0726 50 1 3.1183 2.1359 -2.6389 51 1 4.8396 1.7629 -2.3819 52 1 4.5256 4.5697 -2.3702 53 1 4.9719 6.0524 -3.2101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565945337.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:45 Heat of formation + Delta-G solvation = -150.927420 kcal Electronic energy + Delta-G solvation = -30638.009546 eV Core-core repulsion = 26508.502584 eV Total energy + Delta-G solvation = -4129.506963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57936 -40.41373 -39.46469 -37.86609 -36.76017 -35.60250 -34.11670 -32.44425 -31.99978 -31.40082 -29.90006 -29.42158 -26.96111 -25.40784 -24.52482 -24.22526 -23.89244 -23.20445 -21.62693 -21.07079 -20.32437 -19.40464 -18.46414 -18.06034 -17.10199 -17.05102 -16.95318 -16.69754 -16.57109 -16.37405 -16.01413 -15.72673 -15.59562 -15.38976 -15.21324 -14.91600 -14.55055 -14.33662 -14.06853 -13.95649 -13.61269 -13.54788 -13.26409 -13.09777 -12.97504 -12.81466 -12.74217 -12.71718 -12.45961 -12.26692 -12.22658 -12.11851 -11.96264 -11.89876 -11.72046 -11.62667 -11.32414 -11.24840 -10.99523 -10.89465 -10.53484 -10.44762 -9.80978 -9.17579 -8.44280 -5.38720 1.53263 1.55877 1.66543 1.74935 1.82905 2.58230 2.69465 2.96104 3.19241 3.33331 3.36807 3.57311 3.66876 3.73247 3.77355 3.87612 4.02454 4.06622 4.11127 4.14957 4.22504 4.26870 4.30504 4.37068 4.40777 4.45721 4.51356 4.53823 4.55784 4.62212 4.68254 4.71982 4.73006 4.78372 4.82104 4.88601 4.89438 4.93999 4.98561 5.04822 5.07869 5.13084 5.15342 5.23215 5.32057 5.40044 5.53194 6.22723 6.25332 6.40729 6.44476 7.03478 7.06005 7.93389 8.04506 9.07565 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.002710 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.046601 B =10328.014719 C =12849.485386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.386 6.386 4 C 0.095 3.905 5 H 0.092 0.908 6 C 0.088 3.912 7 N -0.616 5.616 8 C 0.518 3.482 9 O -0.581 6.581 10 C -0.118 4.118 11 C -0.075 4.075 12 C -0.154 4.154 13 C 0.062 3.938 14 O -0.402 6.402 15 C 0.052 3.948 16 C -0.141 4.141 17 C 0.127 3.873 18 C -0.095 4.095 19 H 0.083 0.917 20 C 0.174 3.826 21 N -0.756 5.756 22 C -0.337 4.337 23 H 0.068 0.932 24 C -0.105 4.105 25 N -0.974 5.974 26 Si 1.129 2.871 27 H -0.274 1.274 28 H -0.293 1.293 29 H -0.278 1.278 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.047 0.953 50 H 0.026 0.974 51 H 0.021 0.979 52 H 0.360 0.640 53 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 -17.953 23.262 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.304 6.304 4 C 0.035 3.965 5 H 0.109 0.891 6 C -0.035 4.035 7 N -0.351 5.351 8 C 0.309 3.691 9 O -0.461 6.461 10 C -0.158 4.158 11 C -0.094 4.094 12 C -0.191 4.191 13 C -0.014 4.014 14 O -0.322 6.322 15 C -0.025 4.025 16 C -0.179 4.179 17 C 0.003 3.997 18 C -0.114 4.114 19 H 0.101 0.899 20 C 0.047 3.953 21 N -0.401 5.401 22 C -0.468 4.468 23 H 0.086 0.914 24 C -0.296 4.296 25 N -0.622 5.622 26 Si 0.953 3.047 27 H -0.200 1.200 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.044 0.956 51 H 0.039 0.961 52 H 0.192 0.808 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.772 -16.921 21.841 27.767 hybrid contribution -0.195 0.025 0.761 0.786 sum -2.968 -16.896 22.602 28.375 Atomic orbital electron populations 1.21770 0.93013 1.03431 1.02552 1.22827 0.96306 0.82417 1.01426 1.87957 1.19098 1.28620 1.94765 1.23078 0.82141 0.96895 0.94340 0.89060 1.22925 0.83776 0.99294 0.97478 1.48537 1.16423 1.52083 1.18014 1.21309 0.80976 0.80649 0.86125 1.90692 1.30483 1.46387 1.78515 1.21778 1.00747 1.02355 0.90882 1.20955 0.93458 0.99897 0.95097 1.22289 0.95968 1.01211 0.99663 1.22559 0.97327 0.97914 0.83619 1.87890 1.56224 1.58368 1.29669 1.22788 0.86555 0.97851 0.95264 1.22215 0.98677 1.02550 0.94451 1.21643 0.97044 0.96763 0.84247 1.22361 0.95316 0.99335 0.94408 0.89886 1.20644 0.96804 0.88084 0.89732 1.42565 1.84972 1.07187 1.05369 1.20385 1.43361 0.97345 0.85698 0.91382 1.27303 1.00101 0.91469 1.10734 1.70996 1.54898 1.29057 1.07235 0.82625 0.77052 0.75559 0.69431 1.20016 1.21855 1.20359 0.93364 0.88881 0.91682 0.93140 0.90658 0.86317 0.89197 0.85971 0.86226 0.92215 0.90915 0.91799 0.93721 0.88473 0.93325 0.86941 0.88556 0.89883 0.93199 0.93490 0.95610 0.96112 0.80820 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.73 6.49 71.98 0.47 1.20 16 3 O -0.39 -8.87 10.16 -148.98 -1.51 -10.39 16 4 C 0.09 2.17 3.00 32.06 0.10 2.27 16 5 H 0.09 1.92 7.74 -2.39 -0.02 1.90 16 6 C 0.09 1.56 6.44 86.93 0.56 2.12 16 7 N -0.62 -15.94 3.33 -811.37 -2.70 -18.64 16 8 C 0.52 13.64 7.59 87.66 0.67 14.31 16 9 O -0.58 -20.99 14.33 -3.04 -0.04 -21.03 16 10 C -0.12 -1.78 4.19 29.85 0.12 -1.66 16 11 C -0.08 -1.29 1.92 -10.67 -0.02 -1.31 16 12 C -0.15 -3.16 5.13 30.68 0.16 -3.00 16 13 C 0.06 1.24 6.84 72.01 0.49 1.73 16 14 O -0.40 -7.96 10.77 -148.98 -1.60 -9.56 16 15 C 0.05 0.71 6.84 72.01 0.49 1.20 16 16 C -0.14 -1.59 5.42 30.69 0.17 -1.42 16 17 C 0.13 4.33 6.27 86.73 0.54 4.87 16 18 C -0.09 -3.08 2.71 -9.61 -0.03 -3.10 16 19 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 20 C 0.17 7.14 5.59 86.38 0.48 7.62 16 21 N -0.76 -39.79 5.47 -343.45 -1.88 -41.67 16 22 C -0.34 -19.61 9.99 84.03 0.84 -18.77 16 23 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 24 C -0.11 -6.30 5.50 84.86 0.47 -5.83 16 25 N -0.97 -63.12 13.70 21.65 0.30 -62.82 16 26 Si 1.13 53.23 29.92 68.60 2.05 55.28 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.12 1.18 7.47 -2.39 -0.02 1.16 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.12 1.21 7.85 -2.39 -0.02 1.19 16 39 H 0.06 1.28 7.95 -2.39 -0.02 1.26 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.73 6.07 -2.39 -0.01 1.72 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.05 1.97 7.73 -2.39 -0.02 1.95 16 49 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 50 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.02 0.86 8.00 -2.38 -0.02 0.84 16 52 H 0.36 19.76 6.43 -92.71 -0.60 19.17 16 53 H 0.24 15.75 6.77 -92.71 -0.63 15.12 16 Total: -1.00 -79.54 415.43 1.27 -78.27 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.42 Total: 31.72 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 6.25 Total: -1.17 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -4.28 Total: -123.12 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -3.16 Total: -40.98 kcal Atomic # 14 Polarization: 53.23 SS G_CDS: 2.05 Total: 55.28 kcal Total: -79.54 1.27 -78.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565945337.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.658 kcal (2) G-P(sol) polarization free energy of solvation -79.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds