Wall clock time and date at job start Sat Apr 11 2020 06:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47214 * 29.99871 * 4 3 2 6 6 C 1.50703 * 109.47218 * 270.00111 * 4 3 2 7 7 O 1.21283 * 120.00093 * 354.99791 * 6 4 3 8 8 N 1.34777 * 120.00177 * 174.99818 * 6 4 3 9 9 C 1.46497 * 120.00108 * 180.02562 * 8 6 4 10 10 H 1.08996 * 110.64240 * 328.13776 * 9 8 6 11 11 C 1.55154 * 110.72110 * 91.47980 * 9 8 6 12 12 C 1.54913 * 101.58268 * 153.86395 * 11 9 8 13 13 N 1.47426 * 104.83137 * 322.98994 * 12 11 9 14 14 C 1.36934 * 125.64673 * 204.16440 * 13 12 11 15 15 H 1.08000 * 120.00262 * 179.97438 * 14 13 12 16 16 C 1.38813 * 119.99994 * 359.95609 * 14 13 12 17 17 N 1.31615 * 120.00089 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99921 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46900 * 60.00382 * 18 16 14 20 20 H 1.48502 * 109.47150 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47048 * 300.00289 * 18 16 14 22 22 C 1.47023 * 108.70234 * 24.12746 * 13 12 11 23 23 H 1.09003 * 109.88137 * 239.52003 * 22 13 12 24 24 C 1.53003 * 110.00702 * 118.43325 * 22 13 12 25 25 C 1.53001 * 109.47403 * 150.00031 * 4 3 2 26 26 C 1.53175 * 109.54360 * 59.55519 * 25 4 3 27 27 C 1.53083 * 109.16460 * 183.15327 * 26 25 4 28 28 O 1.42902 * 109.41465 * 57.61254 * 27 26 25 29 29 C 1.42907 * 114.09469 * 298.83896 * 28 27 26 30 30 C 1.53093 * 109.41294 * 61.15972 * 29 28 27 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 35 35 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 36 36 H 0.97003 * 119.99660 * 0.02562 * 8 6 4 37 37 H 1.08999 * 111.00569 * 271.93668 * 11 9 8 38 38 H 1.09000 * 111.00434 * 35.79260 * 11 9 8 39 39 H 1.08999 * 110.36648 * 204.15133 * 12 11 9 40 40 H 1.09002 * 110.46012 * 81.87704 * 12 11 9 41 41 H 0.97010 * 120.00264 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.46908 * 302.10831 * 24 22 13 43 43 H 1.08993 * 109.47527 * 62.11410 * 24 22 13 44 44 H 1.09002 * 109.46801 * 182.11760 * 24 22 13 45 45 H 1.09003 * 109.54376 * 179.82387 * 25 4 3 46 46 H 1.09000 * 109.52159 * 303.06375 * 26 25 4 47 47 H 1.09000 * 109.51984 * 63.24518 * 26 25 4 48 48 H 1.08999 * 109.48289 * 297.62557 * 27 26 25 49 49 H 1.09004 * 109.49158 * 177.59933 * 27 26 25 50 50 H 1.08992 * 109.48220 * 301.17493 * 29 28 27 51 51 H 1.09004 * 109.48742 * 181.14592 * 29 28 27 52 52 H 1.09001 * 109.52019 * 182.48363 * 30 29 28 53 53 H 1.08998 * 109.57421 * 62.33004 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9310 1.5000 1.4216 7 8 3.1415 1.5295 2.3418 8 7 5.2557 1.5030 1.6700 9 6 5.7419 1.5411 3.0514 10 1 5.0540 2.1002 3.6855 11 6 5.9549 0.1049 3.5983 12 6 7.0407 0.3409 4.6776 13 7 7.9211 1.3766 4.1071 14 6 9.2318 1.5845 4.4448 15 1 9.7941 2.3730 3.9669 16 6 9.8376 0.7820 5.4019 17 7 9.1524 -0.1790 5.9843 18 14 11.6257 1.0651 5.8622 19 1 11.7879 2.4422 6.3938 20 1 12.0312 0.0835 6.9000 21 1 12.4794 0.8953 4.6590 22 6 7.1591 2.1487 3.1147 23 1 7.6387 2.0736 2.1388 24 6 7.0779 3.6154 3.5428 25 6 3.8409 2.7457 -0.7207 26 6 3.2246 3.9527 -0.0068 27 6 3.5749 5.2266 -0.7801 28 8 3.1017 5.1120 -2.1236 29 6 3.6794 4.0290 -2.8553 30 6 3.3333 2.7069 -2.1653 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 5.8872 1.4798 0.9339 37 1 5.0390 -0.2833 4.0439 38 1 6.3197 -0.5609 2.8162 39 1 7.6015 -0.5761 4.8585 40 1 6.5873 0.6961 5.6030 41 1 9.5758 -0.7401 6.6529 42 1 6.6138 3.6815 4.5268 43 1 8.0818 4.0377 3.5853 44 1 6.4799 4.1719 2.8210 45 1 4.9273 2.8345 -0.7182 46 1 2.1415 3.8376 0.0342 47 1 3.6232 4.0197 1.0054 48 1 4.6564 5.3625 -0.7859 49 1 3.1033 6.0844 -0.3005 50 1 4.7622 4.1492 -2.8883 51 1 3.2831 4.0237 -3.8707 52 1 3.8097 1.8830 -2.6968 53 1 2.2525 2.5655 -2.1680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566098227.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:50 Heat of formation + Delta-G solvation = -134.266928 kcal Electronic energy + Delta-G solvation = -31857.972276 eV Core-core repulsion = 27729.187767 eV Total energy + Delta-G solvation = -4128.784510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60034 -40.17810 -39.35055 -38.28549 -35.71975 -35.20616 -33.76652 -32.09837 -32.01397 -31.98050 -30.66561 -28.88218 -26.42632 -25.83190 -24.58690 -24.42693 -23.72138 -22.20627 -21.65599 -21.29591 -20.87993 -18.74319 -18.46626 -18.00331 -17.29032 -17.24526 -16.79462 -16.57032 -16.22674 -15.89328 -15.76647 -15.63620 -15.44119 -15.21283 -14.98808 -14.67976 -14.34729 -14.20541 -14.00997 -13.71817 -13.31069 -13.25460 -13.19559 -12.96766 -12.92307 -12.83985 -12.71569 -12.60795 -12.26395 -12.25143 -12.17808 -12.09825 -12.04846 -12.02523 -11.70269 -11.58077 -11.45548 -11.28797 -11.15350 -10.72745 -10.51601 -10.19232 -10.02639 -8.90526 -7.74840 -5.20032 1.48433 1.51199 1.55973 1.57323 1.99578 2.51545 2.69320 3.02547 3.35657 3.47476 3.59161 3.61782 3.80964 3.85450 3.94075 3.98017 4.06888 4.14710 4.18455 4.22490 4.31693 4.39138 4.46477 4.48167 4.48392 4.61470 4.62403 4.66528 4.71874 4.74782 4.79179 4.83819 4.84961 4.92511 4.94978 5.02957 5.03506 5.11611 5.16478 5.21732 5.25435 5.35110 5.44960 5.49391 5.58690 5.61164 5.79252 6.07142 6.30024 6.32661 6.57844 7.10816 7.24569 7.78894 8.42424 9.26913 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.002878 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.932562 B = 9726.431813 C =11021.933585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.086 3.914 5 H 0.116 0.884 6 C 0.491 3.509 7 O -0.572 6.572 8 N -0.701 5.701 9 C 0.153 3.847 10 H 0.074 0.926 11 C -0.138 4.138 12 C 0.158 3.842 13 N -0.614 5.614 14 C -0.228 4.228 15 H 0.086 0.914 16 C -0.068 4.068 17 N -0.952 5.952 18 Si 0.978 3.022 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.274 1.274 22 C 0.152 3.848 23 H 0.056 0.944 24 C -0.146 4.146 25 C -0.077 4.077 26 C -0.144 4.144 27 C 0.064 3.936 28 O -0.404 6.404 29 C 0.055 3.945 30 C -0.140 4.140 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.078 0.922 40 H -0.019 1.019 41 H 0.246 0.754 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.064 0.936 51 H 0.107 0.893 52 H 0.099 0.901 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 3.883 -21.322 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 O -0.285 6.285 4 C 0.025 3.975 5 H 0.133 0.867 6 C 0.278 3.722 7 O -0.451 6.451 8 N -0.354 5.354 9 C 0.047 3.953 10 H 0.092 0.908 11 C -0.178 4.178 12 C 0.033 3.967 13 N -0.339 5.339 14 C -0.357 4.357 15 H 0.104 0.896 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.807 3.193 19 H -0.207 1.207 20 H -0.225 1.225 21 H -0.199 1.199 22 C 0.046 3.954 23 H 0.073 0.927 24 C -0.206 4.206 25 C -0.096 4.096 26 C -0.182 4.182 27 C -0.013 4.013 28 O -0.324 6.324 29 C -0.021 4.021 30 C -0.178 4.178 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.096 0.904 40 H -0.001 1.001 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.126 0.874 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.083 0.917 51 H 0.125 0.875 52 H 0.118 0.882 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.106 4.111 -20.631 24.785 hybrid contribution 1.393 -0.488 1.246 1.931 sum -11.713 3.623 -19.385 22.937 Atomic orbital electron populations 1.21708 0.92762 1.03255 1.02527 1.22734 0.96681 0.82974 1.00348 1.87989 1.18658 1.27656 1.94189 1.22141 0.83503 1.01683 0.90221 0.86665 1.21948 0.82111 0.75105 0.93062 1.90699 1.56208 1.50386 1.47761 1.45901 1.07041 1.74362 1.08114 1.21671 0.94431 0.96055 0.83129 0.90775 1.23188 0.98551 0.96675 0.99372 1.21651 0.89407 0.94456 0.91228 1.44717 1.08172 1.35896 1.45093 1.19364 0.86132 1.12884 1.17272 0.89593 1.25608 1.02342 0.98595 0.99521 1.70037 1.36373 1.22943 1.30802 0.85154 0.79854 0.76855 0.77478 1.20702 1.22458 1.19942 1.21193 0.89706 0.91227 0.93310 0.92663 1.22124 1.01142 0.96961 1.00350 1.21378 1.01359 0.91251 0.95594 1.22082 1.01661 0.95610 0.98829 1.22588 0.99452 0.97132 0.82082 1.87911 1.68320 1.51288 1.24847 1.22779 0.98498 0.85069 0.95763 1.22159 1.02663 0.99384 0.93582 0.89253 0.91206 0.93572 0.94993 0.90708 0.74922 0.92066 0.90811 0.90432 1.00091 0.94471 0.94976 0.93290 0.91041 0.87398 0.92100 0.92590 0.91790 0.88796 0.91729 0.87477 0.88247 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.93 6.46 71.98 0.46 1.39 16 3 O -0.37 -8.43 8.07 -129.99 -1.05 -9.47 16 4 C 0.09 1.66 2.26 29.85 0.07 1.73 16 5 H 0.12 1.54 7.79 -2.38 -0.02 1.52 16 6 C 0.49 13.44 5.96 87.66 0.52 13.96 16 7 O -0.57 -21.43 16.15 15.95 0.26 -21.17 16 8 N -0.70 -17.99 5.14 -436.92 -2.24 -20.24 16 9 C 0.15 5.31 2.85 46.18 0.13 5.44 16 10 H 0.07 2.91 7.25 -2.39 -0.02 2.89 16 11 C -0.14 -5.39 6.77 31.99 0.22 -5.17 16 12 C 0.16 7.87 5.89 86.86 0.51 8.38 16 13 N -0.61 -30.15 3.13 -668.24 -2.09 -32.24 16 14 C -0.23 -12.18 9.90 84.03 0.83 -11.35 16 15 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 16 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 17 N -0.95 -56.24 10.09 21.65 0.22 -56.03 16 18 Si 0.98 44.71 29.55 68.60 2.03 46.74 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.15 5.74 3.47 45.34 0.16 5.89 16 23 H 0.06 1.90 7.72 -2.39 -0.02 1.88 16 24 C -0.15 -5.13 9.14 71.98 0.66 -4.47 16 25 C -0.08 -1.21 2.13 -10.68 -0.02 -1.23 16 26 C -0.14 -2.95 5.01 30.68 0.15 -2.79 16 27 C 0.06 1.13 6.84 72.01 0.49 1.62 16 28 O -0.40 -7.77 10.77 -148.98 -1.60 -9.38 16 29 C 0.06 0.69 6.84 72.01 0.49 1.19 16 30 C -0.14 -1.73 5.32 30.68 0.16 -1.57 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.99 8.08 -2.39 -0.02 0.98 16 36 H 0.41 7.86 8.15 -92.71 -0.76 7.11 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.08 4.37 5.87 -2.39 -0.01 4.35 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.11 1.27 7.92 -2.39 -0.02 1.25 16 46 H 0.06 1.53 7.59 -2.39 -0.02 1.51 16 47 H 0.06 1.34 7.36 -2.39 -0.02 1.32 16 48 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 50 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.07 1.09 7.60 -2.39 -0.02 1.07 16 Total: -1.00 -72.46 412.33 1.68 -70.78 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.12 Total: 22.97 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.05 Total: 8.04 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.12 Total: -108.51 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -2.40 Total: -40.02 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -72.46 1.68 -70.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566098227.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.483 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds