Wall clock time and date at job start Sat Apr 11 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46721 * 2 1 4 4 C 1.42907 * 113.99757 * 184.72635 * 3 2 1 5 5 H 1.08996 * 109.46931 * 5.58568 * 4 3 2 6 6 C 1.50700 * 109.46894 * 125.58105 * 4 3 2 7 7 O 1.21278 * 120.00151 * 13.20699 * 6 4 3 8 8 N 1.34782 * 120.00236 * 193.20245 * 6 4 3 9 9 C 1.47019 * 125.64273 * 355.12258 * 8 6 4 10 10 C 1.54312 * 107.27217 * 180.96437 * 9 8 6 11 11 C 1.55156 * 102.86340 * 22.52623 * 10 9 8 12 12 H 1.08997 * 111.00595 * 82.38160 * 11 10 9 13 13 C 1.53003 * 111.03872 * 206.21221 * 11 10 9 14 14 N 1.46504 * 109.47155 * 287.21620 * 13 11 10 15 15 C 1.36938 * 119.99813 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00166 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99947 * 179.97438 * 15 14 13 18 18 N 1.31612 * 119.99894 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99852 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47262 * 89.99483 * 19 17 15 21 21 H 1.48502 * 109.46925 * 210.00061 * 19 17 15 22 22 H 1.48503 * 109.46994 * 329.99416 * 19 17 15 23 23 C 1.47426 * 125.64979 * 175.42601 * 8 6 4 24 24 C 1.53001 * 109.47372 * 245.58005 * 4 3 2 25 25 C 1.53178 * 109.53977 * 63.02132 * 24 4 3 26 26 C 1.53091 * 109.16095 * 183.15322 * 25 24 4 27 27 O 1.42900 * 109.41585 * 57.61106 * 26 25 24 28 28 C 1.42906 * 114.09478 * 298.83952 * 27 26 25 29 29 C 1.53084 * 109.41337 * 61.16024 * 28 27 26 30 30 H 1.09003 * 109.47387 * 299.99679 * 1 2 3 31 31 H 1.08993 * 109.47054 * 60.00276 * 1 2 3 32 32 H 1.09009 * 109.46691 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46962 * 239.99915 * 2 1 3 34 34 H 1.09001 * 109.47243 * 119.99434 * 2 1 3 35 35 H 1.08996 * 109.88266 * 300.50762 * 9 8 6 36 36 H 1.09000 * 109.88492 * 61.67923 * 9 8 6 37 37 H 1.09001 * 110.92633 * 264.11317 * 10 9 8 38 38 H 1.08997 * 110.74450 * 140.85832 * 10 9 8 39 39 H 1.08998 * 109.47092 * 47.21741 * 13 11 10 40 40 H 1.08994 * 109.47012 * 167.21558 * 13 11 10 41 41 H 0.96997 * 119.99857 * 359.97438 * 14 13 11 42 42 H 0.97002 * 120.00237 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.36320 * 274.67822 * 23 8 6 44 44 H 1.08999 * 110.36723 * 36.99749 * 23 8 6 45 45 H 1.08994 * 109.54323 * 183.28677 * 24 4 3 46 46 H 1.09005 * 109.52310 * 63.24526 * 25 24 4 47 47 H 1.09000 * 109.52687 * 303.06091 * 25 24 4 48 48 H 1.08996 * 109.47931 * 297.62298 * 26 25 24 49 49 H 1.09003 * 109.47747 * 177.59424 * 26 25 24 50 50 H 1.09001 * 109.47983 * 181.14364 * 28 27 26 51 51 H 1.09005 * 109.47905 * 301.16489 * 28 27 26 52 52 H 1.09002 * 109.52755 * 62.29470 * 29 28 27 53 53 H 1.09001 * 109.52412 * 182.42265 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4267 1.4617 -0.1076 5 1 3.8594 0.4744 -0.2689 6 6 3.7719 2.3573 -1.2693 7 8 2.9114 3.0364 -1.7881 8 7 5.0371 2.4038 -1.7317 9 6 6.1923 1.7157 -1.1373 10 6 7.4284 2.0781 -1.9870 11 6 7.0021 3.4051 -2.6685 12 1 7.1560 4.2537 -2.0020 13 6 7.7463 3.6078 -3.9900 14 7 9.1426 3.9561 -3.7156 15 6 10.0075 4.1852 -4.7523 16 1 9.6601 4.1096 -5.7721 17 6 11.3304 4.5158 -4.4924 18 7 12.1615 4.7365 -5.4888 19 14 11.9310 4.6472 -2.7285 20 1 12.4323 3.3246 -2.2763 21 1 13.0283 5.6450 -2.6523 22 1 10.8099 5.0769 -1.8546 23 6 5.4927 3.1581 -2.9137 24 6 3.9894 2.0606 1.1830 25 6 3.7048 1.1145 2.3535 26 6 4.2009 1.7574 3.6513 27 8 3.5606 3.0223 3.8298 28 6 3.8293 3.9642 2.7892 29 6 3.3183 3.4100 1.4569 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 6.3351 2.0509 -0.1101 36 1 6.0332 0.6376 -1.1590 37 1 7.6276 1.3083 -2.7326 38 1 8.3010 2.2333 -1.3526 39 1 7.7091 2.6874 -4.5727 40 1 7.2747 4.4134 -4.5527 41 1 9.4545 4.0243 -2.7997 42 1 13.0861 4.9671 -5.3072 43 1 5.3468 2.5689 -3.8190 44 1 4.9601 4.1062 -2.9871 45 1 5.0651 2.2025 1.0803 46 1 4.2246 0.1699 2.1930 47 1 2.6322 0.9337 2.4234 48 1 5.2800 1.9006 3.5966 49 1 3.9626 1.1073 4.4932 50 1 3.3233 4.9041 3.0100 51 1 4.9036 4.1366 2.7234 52 1 2.2378 3.2756 1.5085 53 1 3.5606 4.1077 0.6552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567132496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:55 Heat of formation + Delta-G solvation = -141.675765 kcal Electronic energy + Delta-G solvation = -31390.777155 eV Core-core repulsion = 27261.671374 eV Total energy + Delta-G solvation = -4129.105781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74975 -40.24334 -39.21333 -38.31163 -36.60654 -35.25929 -33.97777 -32.36172 -32.12086 -31.97550 -30.46177 -29.16434 -27.03760 -25.12340 -24.63056 -23.87059 -23.75526 -23.49754 -21.59409 -21.10186 -20.47577 -19.64064 -18.28112 -17.98580 -17.55018 -17.06450 -16.94733 -16.53538 -16.45654 -16.43060 -15.70938 -15.66718 -15.36736 -15.27203 -14.88777 -14.80223 -14.70331 -14.51033 -14.15435 -14.03695 -13.66011 -13.36171 -13.29753 -13.24456 -13.14798 -13.09619 -12.82163 -12.71463 -12.34353 -12.25397 -12.19460 -12.04415 -11.98824 -11.82373 -11.77657 -11.73703 -11.62268 -11.21733 -11.12568 -10.96184 -10.66803 -10.23313 -9.71927 -9.29821 -8.01636 -5.36095 1.39057 1.44274 1.46400 1.51572 1.67887 2.50257 2.73813 2.97267 3.22914 3.29894 3.44553 3.52976 3.59299 3.68104 3.81072 3.88458 3.97349 4.07995 4.10683 4.15858 4.20821 4.30161 4.31230 4.36001 4.43158 4.46014 4.49638 4.57175 4.59743 4.66806 4.69140 4.78340 4.78441 4.80581 4.83149 4.88949 4.98228 5.00521 5.05071 5.11254 5.14683 5.18563 5.20652 5.25263 5.36247 5.39491 5.76267 6.08260 6.21616 6.27318 6.44329 7.05532 7.08901 7.83340 8.04391 9.19944 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.002635 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.400925 B =10622.815810 C =11804.399366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.377 6.377 4 C 0.091 3.909 5 H 0.116 0.884 6 C 0.515 3.485 7 O -0.573 6.573 8 N -0.614 5.614 9 C 0.096 3.904 10 C -0.122 4.122 11 C -0.100 4.100 12 H 0.084 0.916 13 C 0.167 3.833 14 N -0.753 5.753 15 C -0.237 4.237 16 H 0.053 0.947 17 C -0.067 4.067 18 N -0.986 5.986 19 Si 0.959 3.041 20 H -0.271 1.271 21 H -0.300 1.300 22 H -0.248 1.248 23 C 0.117 3.883 24 C -0.094 4.094 25 C -0.143 4.143 26 C 0.055 3.945 27 O -0.403 6.403 28 C 0.064 3.936 29 C -0.141 4.141 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.033 0.967 40 H 0.019 0.981 41 H 0.368 0.632 42 H 0.258 0.742 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.109 0.891 50 H 0.094 0.906 51 H 0.060 0.940 52 H 0.062 0.938 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.031 -14.259 21.963 32.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.295 6.295 4 C 0.030 3.970 5 H 0.134 0.866 6 C 0.304 3.696 7 O -0.451 6.451 8 N -0.350 5.350 9 C -0.025 4.025 10 C -0.159 4.159 11 C -0.120 4.120 12 H 0.102 0.898 13 C 0.040 3.960 14 N -0.399 5.399 15 C -0.368 4.368 16 H 0.071 0.929 17 C -0.258 4.258 18 N -0.636 5.636 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.227 1.227 22 H -0.173 1.173 23 C -0.006 4.006 24 C -0.113 4.113 25 C -0.180 4.180 26 C -0.021 4.021 27 O -0.322 6.322 28 C -0.013 4.013 29 C -0.179 4.179 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.127 0.873 50 H 0.112 0.888 51 H 0.078 0.922 52 H 0.081 0.919 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.802 -13.715 21.678 33.027 hybrid contribution 0.930 0.487 -0.387 1.119 sum -19.872 -13.228 21.291 31.987 Atomic orbital electron populations 1.21753 0.93282 1.03377 1.02312 1.22905 0.96341 0.82490 1.01307 1.88042 1.19281 1.28300 1.93868 1.21958 0.83916 0.99090 0.92045 0.86647 1.21106 0.80585 0.83177 0.84725 1.90696 1.48501 1.44946 1.60988 1.48586 1.07626 1.49484 1.29254 1.22430 0.83761 0.98361 0.97959 1.22700 0.97427 0.96260 0.99543 1.22399 0.93015 0.99434 0.97109 0.89775 1.20622 0.83023 0.97541 0.94769 1.42587 1.07289 1.85671 1.04377 1.19014 0.90964 1.38399 0.88392 0.92907 1.25587 0.96329 1.02028 1.01873 1.69899 1.05183 1.56066 1.32483 0.85347 0.78029 0.77830 0.80202 1.19697 1.22716 1.17258 1.22076 0.93567 0.96431 0.88519 1.21617 1.00739 0.95767 0.93183 1.22225 1.03052 0.99103 0.93621 1.22779 0.96917 0.84398 0.98053 1.87914 1.73410 1.24557 1.46367 1.22581 1.00252 0.92245 0.86182 1.22028 1.01389 0.96694 0.97777 0.92155 0.93461 0.88732 0.92913 0.90681 0.89063 0.88455 0.89981 0.88968 0.94934 0.96294 0.79790 0.93337 0.90899 0.91834 0.88067 0.87907 0.91177 0.91878 0.87282 0.88794 0.92155 0.91877 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.62 6.16 71.98 0.44 1.06 16 3 O -0.38 -7.84 8.13 -130.28 -1.06 -8.90 16 4 C 0.09 1.57 1.76 29.85 0.05 1.63 16 5 H 0.12 1.26 7.33 -2.39 -0.02 1.24 16 6 C 0.51 12.91 6.14 87.66 0.54 13.45 16 7 O -0.57 -20.17 16.78 15.67 0.26 -19.90 16 8 N -0.61 -13.32 3.33 -811.84 -2.70 -16.02 16 9 C 0.10 1.39 6.11 86.73 0.53 1.92 16 10 C -0.12 -2.39 6.37 31.78 0.20 -2.18 16 11 C -0.10 -2.59 3.04 -9.40 -0.03 -2.62 16 12 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 13 C 0.17 5.91 5.72 86.38 0.49 6.40 16 14 N -0.75 -33.27 5.35 -343.44 -1.84 -35.11 16 15 C -0.24 -13.25 10.47 84.03 0.88 -12.37 16 16 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.99 -62.66 13.97 21.65 0.30 -62.36 16 19 Si 0.96 43.58 27.74 68.60 1.90 45.48 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.25 -9.95 6.52 99.48 0.65 -9.30 16 23 C 0.12 2.97 6.40 86.85 0.56 3.53 16 24 C -0.09 -1.34 2.05 -10.68 -0.02 -1.36 16 25 C -0.14 -1.42 5.15 30.68 0.16 -1.26 16 26 C 0.05 0.60 6.84 72.01 0.49 1.10 16 27 O -0.40 -7.25 10.77 -148.98 -1.60 -8.86 16 28 C 0.06 1.08 6.84 72.01 0.49 1.57 16 29 C -0.14 -2.75 5.02 30.68 0.15 -2.60 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 0.66 8.11 -2.39 -0.02 0.64 16 34 H 0.08 0.65 7.43 -2.39 -0.02 0.63 16 35 H 0.09 0.97 5.97 -2.39 -0.01 0.96 16 36 H 0.10 0.91 8.00 -2.39 -0.02 0.90 16 37 H 0.08 1.68 7.92 -2.39 -0.02 1.66 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.03 1.16 7.97 -2.39 -0.02 1.14 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.37 15.10 5.53 -92.71 -0.51 14.58 16 42 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 44 H 0.06 1.82 7.99 -2.39 -0.02 1.80 16 45 H 0.10 1.16 5.57 -2.39 -0.01 1.14 16 46 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 47 H 0.07 0.88 6.98 -2.39 -0.02 0.87 16 48 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 50 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.06 1.50 7.51 -2.39 -0.02 1.48 16 53 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 Total: -1.00 -78.26 408.38 1.73 -76.53 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.31 Total: 25.50 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 6.15 Total: 3.64 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.24 Total: -113.50 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -2.40 Total: -37.66 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.90 Total: 45.48 kcal Total: -78.26 1.73 -76.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567132496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.141 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds