Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47242 * 2 1 4 4 C 1.42901 * 114.00075 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46949 * 30.00921 * 4 3 2 6 6 C 1.50699 * 109.47797 * 270.00838 * 4 3 2 7 7 O 1.21285 * 119.99488 * 347.78946 * 6 4 3 8 8 N 1.34777 * 120.00239 * 167.79114 * 6 4 3 9 9 C 1.47021 * 125.64726 * 4.67040 * 8 6 4 10 10 C 1.54326 * 107.26927 * 181.02246 * 9 8 6 11 11 C 1.55151 * 102.94355 * 22.19292 * 10 9 8 12 12 H 1.09000 * 111.01004 * 82.56986 * 11 10 9 13 13 C 1.52997 * 111.00677 * 206.38647 * 11 10 9 14 14 N 1.46501 * 109.47321 * 293.54574 * 13 11 10 15 15 C 1.36934 * 120.00508 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99460 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00048 * 179.97438 * 15 14 13 18 18 N 1.31614 * 119.99757 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99654 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47223 * 90.00734 * 19 17 15 21 21 H 1.48504 * 109.46891 * 210.00140 * 19 17 15 22 22 H 1.48501 * 109.47345 * 330.00092 * 19 17 15 23 23 C 1.47415 * 125.64651 * 184.36102 * 8 6 4 24 24 C 1.52999 * 109.46958 * 150.00486 * 4 3 2 25 25 C 1.53181 * 109.54598 * 53.86700 * 24 4 3 26 26 C 1.53084 * 109.16558 * 183.15113 * 25 24 4 27 27 O 1.42903 * 109.41348 * 57.60790 * 26 25 24 28 28 C 1.42899 * 114.10205 * 298.83772 * 27 26 25 29 29 C 1.53096 * 109.41202 * 61.16156 * 28 27 26 30 30 H 1.08998 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46795 * 299.99559 * 1 2 3 32 32 H 1.09000 * 109.47549 * 59.99358 * 1 2 3 33 33 H 1.09007 * 109.46795 * 240.00441 * 2 1 3 34 34 H 1.08994 * 109.47104 * 120.00700 * 2 1 3 35 35 H 1.08999 * 109.88307 * 300.43808 * 9 8 6 36 36 H 1.08997 * 109.88050 * 61.45015 * 9 8 6 37 37 H 1.08999 * 110.71837 * 140.55709 * 10 9 8 38 38 H 1.09003 * 110.71844 * 263.83000 * 10 9 8 39 39 H 1.09008 * 109.46995 * 53.54459 * 13 11 10 40 40 H 1.08997 * 109.47246 * 173.54501 * 13 11 10 41 41 H 0.97001 * 119.99510 * 0.02562 * 14 13 11 42 42 H 0.97003 * 119.99406 * 179.97438 * 18 17 15 43 43 H 1.09001 * 110.37194 * 274.74732 * 23 8 6 44 44 H 1.08999 * 110.36985 * 37.06963 * 23 8 6 45 45 H 1.09001 * 109.54305 * 174.13367 * 24 4 3 46 46 H 1.09000 * 109.51819 * 303.05844 * 25 24 4 47 47 H 1.09006 * 109.51885 * 63.24311 * 25 24 4 48 48 H 1.08997 * 109.48287 * 297.62501 * 26 25 24 49 49 H 1.09003 * 109.48278 * 177.58960 * 26 25 24 50 50 H 1.08990 * 109.48226 * 301.18182 * 28 27 26 51 51 H 1.08998 * 109.48059 * 181.13597 * 28 27 26 52 52 H 1.09000 * 109.52695 * 182.48867 * 29 28 27 53 53 H 1.09000 * 109.57446 * 62.32203 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.8635 0.6015 -0.5131 6 6 3.9312 1.4997 1.4215 7 8 3.1500 1.6607 2.3352 8 7 5.2467 1.3563 1.6770 9 6 6.3095 1.2521 0.6665 10 6 7.6438 1.0755 1.4214 11 6 7.1930 0.5228 2.7993 12 1 7.0291 -0.5538 2.7539 13 6 8.2069 0.8746 3.8897 14 7 9.4640 0.1670 3.6344 15 6 10.5255 0.3285 4.4842 16 1 10.4358 0.9772 5.3431 17 6 11.7165 -0.3425 4.2424 18 7 11.8255 -1.1333 3.1961 19 14 13.1642 -0.1228 5.4022 20 1 13.0960 -1.1440 6.4782 21 1 14.4325 -0.2839 4.6467 22 1 13.1152 1.2341 6.0037 23 6 5.8590 1.2844 3.0161 24 6 3.8409 2.7456 -0.7206 25 6 3.1124 3.9390 -0.0947 26 6 3.4678 5.2088 -0.8723 27 8 3.1148 5.0388 -2.2465 28 6 3.8007 3.9670 -2.8969 29 6 3.4586 2.6472 -2.2007 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 6.1288 0.3888 0.0262 36 1 6.3389 2.1603 0.0645 37 1 8.2847 0.3579 0.9091 38 1 8.1511 2.0333 1.5373 39 1 8.3876 1.9496 3.8847 40 1 7.8134 0.5769 4.8616 41 1 9.5447 -0.4153 2.8628 42 1 12.6579 -1.6019 3.0270 43 1 6.0497 2.2864 3.4004 44 1 5.2138 0.7318 3.6991 45 1 4.9180 2.8864 -0.6308 46 1 2.0361 3.7732 -0.1402 47 1 3.4213 4.0498 0.9448 48 1 4.5386 5.3962 -0.7926 49 1 2.9189 6.0545 -0.4579 50 1 4.8757 4.1380 -2.8437 51 1 3.4914 3.9180 -3.9409 52 1 4.0150 1.8342 -2.6673 53 1 2.3894 2.4543 -2.2886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567132499.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -145.310554 kcal Electronic energy + Delta-G solvation = -31244.320148 eV Core-core repulsion = 27115.056751 eV Total energy + Delta-G solvation = -4129.263397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75825 -40.18794 -39.26297 -38.19332 -36.47597 -35.37448 -33.88644 -32.11768 -32.01398 -31.86509 -30.41766 -29.05640 -26.94699 -25.18094 -24.57739 -24.11175 -23.73860 -23.62163 -21.38327 -21.08368 -20.49592 -19.16210 -18.46881 -17.97540 -17.48218 -17.13023 -16.92407 -16.53918 -16.47622 -16.08497 -15.71541 -15.63556 -15.43971 -15.30172 -14.97601 -14.78080 -14.69759 -14.47752 -13.97082 -13.88064 -13.80586 -13.34299 -13.22423 -13.04695 -12.98062 -12.94712 -12.86329 -12.76373 -12.34024 -12.24553 -12.15203 -12.12759 -12.10579 -11.78741 -11.71354 -11.67279 -11.62816 -11.34356 -11.16670 -10.93166 -10.57411 -10.26409 -9.73561 -8.99233 -7.95135 -5.23114 1.44171 1.48721 1.49539 1.57896 1.76751 2.56196 2.61076 2.99370 3.23621 3.38960 3.53218 3.55474 3.61286 3.68999 3.83968 3.94584 4.00323 4.10170 4.14624 4.17942 4.26474 4.30713 4.35187 4.38113 4.42620 4.43123 4.53264 4.58944 4.60468 4.65468 4.71480 4.77389 4.80054 4.81069 4.85619 4.90778 4.99022 5.00162 5.04822 5.12793 5.17978 5.19709 5.22662 5.24356 5.39405 5.41009 5.50677 6.01861 6.27585 6.29322 6.43280 7.03217 7.35032 8.09212 8.34200 9.28153 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015452 B = 0.002354 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.612801 B =11894.169024 C =12800.414571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.367 6.367 4 C 0.091 3.909 5 H 0.110 0.890 6 C 0.502 3.498 7 O -0.573 6.573 8 N -0.614 5.614 9 C 0.098 3.902 10 C -0.116 4.116 11 C -0.096 4.096 12 H 0.078 0.922 13 C 0.164 3.836 14 N -0.740 5.740 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.071 4.071 18 N -0.966 5.966 19 Si 0.970 3.030 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.271 1.271 23 C 0.119 3.881 24 C -0.081 4.081 25 C -0.141 4.141 26 C 0.064 3.936 27 O -0.403 6.403 28 C 0.055 3.945 29 C -0.141 4.141 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.017 0.983 41 H 0.377 0.623 42 H 0.252 0.748 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.063 0.937 51 H 0.109 0.891 52 H 0.100 0.900 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.862 6.673 -15.744 26.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 O -0.285 6.285 4 C 0.029 3.971 5 H 0.128 0.872 6 C 0.291 3.709 7 O -0.452 6.452 8 N -0.348 5.348 9 C -0.023 4.023 10 C -0.154 4.154 11 C -0.115 4.115 12 H 0.097 0.903 13 C 0.037 3.963 14 N -0.383 5.383 15 C -0.377 4.377 16 H 0.091 0.909 17 C -0.264 4.264 18 N -0.617 5.617 19 Si 0.799 3.201 20 H -0.216 1.216 21 H -0.220 1.220 22 H -0.196 1.196 23 C -0.005 4.005 24 C -0.100 4.100 25 C -0.179 4.179 26 C -0.013 4.013 27 O -0.322 6.322 28 C -0.021 4.021 29 C -0.178 4.178 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.210 0.790 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.115 0.885 50 H 0.082 0.918 51 H 0.127 0.873 52 H 0.118 0.882 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.572 7.124 -15.241 26.575 hybrid contribution 1.293 -0.788 1.205 1.935 sum -19.279 6.336 -14.036 24.675 Atomic orbital electron populations 1.21710 0.92546 1.03353 1.02629 1.22758 0.96846 0.82901 1.00351 1.88001 1.18549 1.27716 1.94184 1.22063 0.83369 1.01535 0.90125 0.87247 1.21647 0.80444 0.75764 0.93035 1.90690 1.55644 1.50521 1.48367 1.48672 1.05944 1.71572 1.08662 1.22404 0.85478 1.03506 0.90916 1.22573 0.96031 1.02329 0.94423 1.22379 0.93244 0.99909 0.95978 0.90323 1.20637 0.85271 0.94986 0.95368 1.42446 1.09843 1.55060 1.30974 1.19595 0.91702 1.21642 1.04802 0.90928 1.25494 1.00706 1.00201 1.00009 1.69788 1.26820 1.34552 1.30498 0.85193 0.78977 0.77895 0.78008 1.21644 1.22043 1.19598 1.22120 0.93002 1.00353 0.84978 1.21418 1.01075 0.91545 0.95926 1.22042 1.01521 0.95484 0.98882 1.22597 1.00417 0.96955 0.81308 1.87911 1.67533 1.52877 1.23900 1.22777 0.96915 0.85205 0.97209 1.22191 1.03238 0.99503 0.92911 0.89151 0.93393 0.91223 0.90772 0.94966 0.89035 0.88796 0.89774 0.90625 0.95584 0.96553 0.79038 0.93950 0.91110 0.91700 0.87926 0.91650 0.92868 0.92089 0.88519 0.91831 0.87283 0.88205 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.85 6.46 71.98 0.46 1.32 16 3 O -0.37 -8.12 8.10 -130.23 -1.06 -9.18 16 4 C 0.09 1.73 1.60 29.85 0.05 1.77 16 5 H 0.11 1.51 7.50 -2.38 -0.02 1.49 16 6 C 0.50 13.21 6.23 87.66 0.55 13.76 16 7 O -0.57 -20.35 16.84 15.70 0.26 -20.08 16 8 N -0.61 -14.63 3.32 -811.37 -2.70 -17.33 16 9 C 0.10 1.76 6.06 86.73 0.53 2.29 16 10 C -0.12 -2.82 6.12 31.78 0.19 -2.63 16 11 C -0.10 -2.80 3.12 -9.33 -0.03 -2.83 16 12 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 13 C 0.16 6.21 5.71 86.38 0.49 6.70 16 14 N -0.74 -35.81 5.45 -343.45 -1.87 -37.68 16 15 C -0.25 -13.37 9.99 84.03 0.84 -12.53 16 16 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 18 N -0.97 -57.15 13.06 21.65 0.28 -56.87 16 19 Si 0.97 45.19 29.55 68.60 2.03 47.21 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.12 3.25 6.36 86.94 0.55 3.80 16 24 C -0.08 -1.27 2.02 -10.67 -0.02 -1.30 16 25 C -0.14 -2.81 5.03 30.68 0.15 -2.65 16 26 C 0.06 1.08 6.84 72.01 0.49 1.57 16 27 O -0.40 -7.47 10.76 -148.98 -1.60 -9.07 16 28 C 0.06 0.67 6.84 72.01 0.49 1.17 16 29 C -0.14 -1.68 5.36 30.69 0.16 -1.51 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 34 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 1.26 7.95 -2.39 -0.02 1.24 16 36 H 0.09 1.26 6.01 -2.39 -0.01 1.25 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.08 1.94 8.01 -2.39 -0.02 1.92 16 39 H 0.03 0.98 8.11 -2.38 -0.02 0.96 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.38 19.05 7.53 -92.71 -0.70 18.35 16 42 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 44 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 45 H 0.10 1.35 5.49 -2.39 -0.01 1.33 16 46 H 0.06 1.56 7.44 -2.39 -0.02 1.54 16 47 H 0.05 1.25 7.53 -2.38 -0.02 1.23 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.07 1.05 7.77 -2.39 -0.02 1.03 16 Total: -1.00 -71.84 413.35 1.65 -70.19 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.18 Total: 28.89 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 6.13 Total: 3.92 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.29 Total: -111.88 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.39 Total: -38.33 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.84 1.65 -70.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567132499.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.123 kcal (2) G-P(sol) polarization free energy of solvation -71.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds