Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47052 * 2 1 4 4 C 1.42908 * 113.99835 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47139 * 329.99976 * 4 3 2 6 6 C 1.52993 * 109.46865 * 90.00094 * 4 3 2 7 7 C 1.50696 * 109.46852 * 209.99814 * 4 3 2 8 8 O 1.21280 * 120.00530 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99883 * 180.02562 * 7 4 3 10 10 C 1.46497 * 120.00193 * 180.02562 * 9 7 4 11 11 C 1.52998 * 109.47289 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.32622 * 59.30143 * 11 10 9 13 13 C 1.54605 * 110.36852 * 181.54021 * 11 10 9 14 14 C 1.54157 * 103.80100 * 142.64235 * 13 11 10 15 15 C 1.53979 * 104.59680 * 0.02562 * 14 13 11 16 16 O 1.44465 * 110.36919 * 297.06361 * 11 10 9 17 17 C 1.52403 * 110.20936 * 118.50980 * 14 13 11 18 18 C 1.53302 * 109.39384 * 182.46516 * 17 14 13 19 19 N 1.46923 * 108.72164 * 306.31644 * 18 17 14 20 20 C 1.36932 * 120.57294 * 234.15830 * 19 18 17 21 21 H 1.08004 * 119.99837 * 152.45687 * 20 19 18 22 22 C 1.38811 * 120.00375 * 332.46203 * 20 19 18 23 23 N 1.31616 * 120.00061 * 159.34538 * 22 20 19 24 24 Si 1.86806 * 119.99845 * 339.34821 * 22 20 19 25 25 H 1.48502 * 109.46972 * 93.14232 * 24 22 20 26 26 H 1.48498 * 109.47147 * 213.14151 * 24 22 20 27 27 H 1.48495 * 109.47038 * 333.14803 * 24 22 20 28 28 C 1.46934 * 118.85551 * 54.14617 * 19 18 17 29 29 C 1.52416 * 110.34537 * 241.45976 * 14 13 11 30 30 H 1.08995 * 109.47452 * 300.00102 * 1 2 3 31 31 H 1.09008 * 109.46734 * 60.00642 * 1 2 3 32 32 H 1.09002 * 109.47274 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47452 * 239.99898 * 2 1 3 34 34 H 1.09006 * 109.47068 * 119.99773 * 2 1 3 35 35 H 1.08999 * 109.47404 * 300.00073 * 6 4 3 36 36 H 1.09007 * 109.47439 * 59.99805 * 6 4 3 37 37 H 1.08998 * 109.47034 * 179.97438 * 6 4 3 38 38 H 0.97002 * 119.99864 * 0.02562 * 9 7 4 39 39 H 1.09000 * 109.47492 * 300.00503 * 10 9 7 40 40 H 1.09006 * 109.46948 * 60.00327 * 10 9 7 41 41 H 1.08996 * 110.54740 * 261.31059 * 13 11 10 42 42 H 1.08997 * 110.54752 * 24.11493 * 13 11 10 43 43 H 1.09001 * 110.39143 * 217.47200 * 15 14 13 44 44 H 1.08998 * 110.49326 * 95.12751 * 15 14 13 45 45 H 1.08995 * 109.48774 * 302.43935 * 17 14 13 46 46 H 1.08993 * 109.48455 * 62.49281 * 17 14 13 47 47 H 1.09001 * 109.59305 * 186.54345 * 18 17 14 48 48 H 1.09000 * 109.72271 * 66.16454 * 18 17 14 49 49 H 0.97009 * 119.99652 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.59500 * 186.07363 * 28 19 18 51 51 H 1.09006 * 109.72715 * 65.68555 * 28 19 18 52 52 H 1.09009 * 109.48262 * 297.57160 * 29 14 13 53 53 H 1.09001 * 109.48392 * 57.61631 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6016 0.5147 6 6 3.9398 1.5001 -1.4417 7 6 3.8342 2.7265 0.7109 8 8 2.9853 3.4600 1.1718 9 7 5.1382 3.0440 0.8341 10 6 5.5303 4.2748 1.5252 11 6 7.0555 4.3957 1.5257 12 1 7.4343 4.4134 0.5037 13 6 7.4941 5.6694 2.2843 14 6 8.7758 5.2348 3.0225 15 6 8.9678 3.7583 2.6302 16 8 7.6463 3.3021 2.2620 17 6 9.9631 6.0649 2.5494 18 6 11.2367 5.5766 3.2490 19 7 11.0109 5.5874 4.7008 20 6 11.8664 6.2578 5.5337 21 1 11.5088 6.6465 6.4758 22 6 13.1931 6.4381 5.1672 23 7 13.9061 7.3930 5.7257 24 14 13.9663 5.3253 3.8814 25 1 13.8394 5.9539 2.5420 26 1 15.4027 5.1245 4.1998 27 1 13.2713 4.0130 3.8800 28 6 9.8512 4.8666 5.2434 29 6 8.5875 5.3601 4.5298 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.6481 0.5842 -1.9555 36 1 3.5075 2.3586 -1.9559 37 1 5.0264 1.5866 -1.4413 38 1 5.8171 2.4576 0.4652 39 1 5.0976 5.1335 1.0118 40 1 5.1682 4.2456 2.5529 41 1 7.7090 6.4767 1.5843 42 1 6.7273 5.9735 2.9967 43 1 9.3443 3.1859 3.4780 44 1 9.6488 3.6739 1.7834 45 1 10.0762 5.9558 1.4708 46 1 9.7937 7.1136 2.7932 47 1 12.0660 6.2398 3.0031 48 1 11.4701 4.5631 2.9229 49 1 14.8332 7.5192 5.4692 50 1 9.7671 5.0616 6.3125 51 1 9.9716 3.7964 5.0753 52 1 8.4082 6.4039 4.7882 53 1 7.7349 4.7566 4.8411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569579398.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -110.155648 kcal Electronic energy + Delta-G solvation = -30663.249581 eV Core-core repulsion = 26535.510615 eV Total energy + Delta-G solvation = -4127.738966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.57003 -40.01174 -38.11023 -37.06705 -34.94212 -33.48250 -32.95104 -31.60260 -30.91864 -30.53486 -30.06116 -27.15282 -25.80974 -24.60812 -23.88292 -23.06146 -22.89019 -21.75107 -21.05319 -20.40783 -18.62348 -17.75408 -17.44254 -16.92309 -16.36824 -16.11031 -15.75967 -15.63077 -15.36345 -15.08458 -14.88270 -14.46859 -14.03671 -13.80758 -13.72795 -13.58064 -13.50783 -13.09221 -13.05312 -12.82286 -12.67364 -12.61035 -12.41528 -12.37890 -12.15846 -11.82113 -11.77928 -11.55149 -11.46646 -11.29498 -11.15965 -10.85857 -10.69781 -10.46003 -10.30724 -10.11262 -9.88369 -9.79131 -9.68172 -9.62184 -9.42751 -9.31870 -8.64093 -6.99575 -5.97614 -3.33316 2.36492 2.52898 3.27455 3.44834 3.46964 3.49012 3.79486 4.31033 4.45402 4.45824 4.49585 4.55055 4.66859 4.69392 4.80302 4.84003 4.90288 4.93023 4.99695 5.00571 5.04973 5.22089 5.25760 5.31960 5.39700 5.41942 5.49162 5.53082 5.54923 5.62252 5.71281 5.73890 5.79858 5.82294 5.88995 5.93506 6.01551 6.12362 6.15894 6.30995 6.36040 6.44572 6.57729 6.63228 6.65102 6.67217 6.83335 6.92216 7.23306 7.93947 7.97226 8.30461 8.91723 9.69457 10.07063 11.18429 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.001973 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.001485 B =14187.774802 C =14402.151161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.088 0.912 6 C -0.171 4.171 7 C 0.513 3.487 8 O -0.521 6.521 9 N -0.722 5.722 10 C 0.129 3.871 11 C 0.062 3.938 12 H 0.072 0.928 13 C -0.139 4.139 14 C -0.077 4.077 15 C 0.052 3.948 16 O -0.373 6.373 17 C -0.121 4.121 18 C 0.125 3.875 19 N -0.604 5.604 20 C -0.260 4.260 21 H 0.085 0.915 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.271 1.271 28 C 0.146 3.854 29 C -0.119 4.119 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.404 0.596 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.024 0.976 49 H 0.262 0.738 50 H 0.064 0.936 51 H 0.023 0.977 52 H 0.065 0.935 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.345 -13.756 -15.213 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.010 3.990 5 H 0.106 0.894 6 C -0.228 4.228 7 C 0.298 3.702 8 O -0.396 6.396 9 N -0.376 5.376 10 C 0.006 3.994 11 C 0.004 3.996 12 H 0.090 0.910 13 C -0.177 4.177 14 C -0.077 4.077 15 C -0.024 4.024 16 O -0.292 6.292 17 C -0.160 4.160 18 C -0.001 4.001 19 N -0.328 5.328 20 C -0.388 4.388 21 H 0.103 0.897 22 C -0.176 4.176 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.020 3.980 29 C -0.159 4.159 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.238 0.762 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.042 0.958 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.041 0.959 52 H 0.084 0.916 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.037 -13.178 -14.765 28.883 hybrid contribution 1.314 -0.863 -0.982 1.853 sum -19.724 -14.040 -15.746 28.881 Atomic orbital electron populations 1.21730 0.93351 1.02269 1.03465 1.22604 0.96039 0.83451 1.00137 1.88057 1.18263 1.26422 1.94927 1.21863 0.83893 0.96587 0.96685 0.89437 1.22245 1.01664 1.03841 0.95095 1.20367 0.82552 0.87294 0.80017 1.90732 1.50158 1.51325 1.47396 1.45843 1.07023 1.25607 1.59091 1.21495 0.92687 0.86818 0.98399 1.23222 0.92255 0.87924 0.96183 0.91006 1.23051 0.98085 0.96947 0.99626 1.21377 0.94488 0.94965 0.96904 1.23648 0.83981 0.94606 1.00127 1.89121 1.29128 1.37245 1.73687 1.22018 0.95522 1.00059 0.98428 1.21367 0.95768 0.98169 0.84801 1.44328 1.28353 1.59320 1.00786 1.18929 0.89239 1.27870 1.02737 0.89730 1.25285 0.96177 0.98012 0.98109 1.69840 1.09437 1.30460 1.45359 0.86956 0.77989 0.82783 0.80987 1.21709 1.23156 1.19609 1.21011 0.86142 0.93729 0.97114 1.21949 0.99005 1.01839 0.93058 0.91585 0.91758 0.90973 0.93184 0.93147 0.91175 0.91025 0.90871 0.76154 0.90090 0.90452 0.90161 0.90192 0.88303 0.92364 0.92751 0.91217 0.90915 0.95814 0.92783 0.91740 0.95907 0.91599 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.38 6.47 37.16 0.24 0.62 16 3 O -0.36 -3.78 9.52 -55.14 -0.52 -4.30 16 4 C 0.07 0.61 3.14 -27.89 -0.09 0.52 16 5 H 0.09 0.56 7.79 -51.93 -0.40 0.16 16 6 C -0.17 -1.02 9.42 37.15 0.35 -0.67 16 7 C 0.51 5.88 7.23 -10.99 -0.08 5.80 16 8 O -0.52 -8.36 16.50 -14.35 -0.24 -8.60 16 9 N -0.72 -6.82 5.39 -60.29 -0.32 -7.15 16 10 C 0.13 1.34 5.30 -4.04 -0.02 1.31 16 11 C 0.06 0.65 3.35 -25.89 -0.09 0.56 16 12 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 13 C -0.14 -1.58 5.91 -25.28 -0.15 -1.73 16 14 C -0.08 -1.09 0.69 -154.00 -0.11 -1.20 16 15 C 0.05 0.72 5.63 37.67 0.21 0.93 16 16 O -0.37 -4.71 11.27 -35.23 -0.40 -5.11 16 17 C -0.12 -1.97 4.55 -26.88 -0.12 -2.09 16 18 C 0.12 2.57 3.91 -3.66 -0.01 2.56 16 19 N -0.60 -13.78 2.76 -172.19 -0.47 -14.26 16 20 C -0.26 -7.11 10.03 -15.06 -0.15 -7.26 16 21 H 0.09 2.49 8.06 -52.48 -0.42 2.06 16 22 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 23 N -0.91 -27.53 13.97 55.49 0.78 -26.76 16 24 Si 0.88 21.93 24.35 -169.99 -4.14 17.79 16 25 H -0.29 -6.91 6.63 56.52 0.37 -6.53 16 26 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.27 -6.58 6.64 56.52 0.38 -6.20 16 28 C 0.15 2.75 6.20 -3.66 -0.02 2.73 16 29 C -0.12 -1.87 4.70 -26.88 -0.13 -1.99 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.26 7.87 -51.93 -0.41 -0.15 16 34 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 36 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.07 0.32 7.56 -51.93 -0.39 -0.07 16 38 H 0.40 2.94 7.87 -40.82 -0.32 2.62 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 0.84 7.72 -51.93 -0.40 0.44 16 42 H 0.08 0.90 7.45 -51.93 -0.39 0.51 16 43 H 0.10 1.46 5.99 -51.93 -0.31 1.15 16 44 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.07 1.68 4.47 -51.93 -0.23 1.44 16 48 H 0.02 0.48 6.42 -51.93 -0.33 0.15 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 51 H 0.02 0.42 6.44 -51.93 -0.33 0.08 16 52 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 53 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -33.78 403.25 -8.55 -42.33 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.43 Total: -0.13 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 0.13 Total: 0.10 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.02 Total: -48.16 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.16 Total: -18.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.78 -8.55 -42.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569579398.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.827 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds