Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47052 * 2 1 4 4 C 1.42908 * 113.99835 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47139 * 329.99976 * 4 3 2 6 6 C 1.52993 * 109.46865 * 90.00094 * 4 3 2 7 7 C 1.50696 * 109.46852 * 209.99814 * 4 3 2 8 8 O 1.21280 * 120.00530 * 0.02562 * 7 4 3 9 9 N 1.34781 * 119.99883 * 180.02562 * 7 4 3 10 10 C 1.46497 * 120.00193 * 180.02562 * 9 7 4 11 11 C 1.52998 * 109.47289 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.32622 * 59.30143 * 11 10 9 13 13 C 1.54605 * 110.36852 * 181.54021 * 11 10 9 14 14 C 1.54157 * 103.80100 * 142.64235 * 13 11 10 15 15 C 1.53979 * 104.59680 * 0.02562 * 14 13 11 16 16 O 1.44465 * 110.36919 * 297.06361 * 11 10 9 17 17 C 1.52403 * 110.20936 * 118.50980 * 14 13 11 18 18 C 1.53302 * 109.39384 * 182.46516 * 17 14 13 19 19 N 1.46923 * 108.72164 * 306.31644 * 18 17 14 20 20 C 1.36932 * 120.57294 * 234.15830 * 19 18 17 21 21 H 1.08004 * 119.99837 * 152.45687 * 20 19 18 22 22 C 1.38811 * 120.00375 * 332.46203 * 20 19 18 23 23 N 1.31616 * 120.00061 * 159.34538 * 22 20 19 24 24 Si 1.86806 * 119.99845 * 339.34821 * 22 20 19 25 25 H 1.48502 * 109.46972 * 93.14232 * 24 22 20 26 26 H 1.48498 * 109.47147 * 213.14151 * 24 22 20 27 27 H 1.48495 * 109.47038 * 333.14803 * 24 22 20 28 28 C 1.46934 * 118.85551 * 54.14617 * 19 18 17 29 29 C 1.52416 * 110.34537 * 241.45976 * 14 13 11 30 30 H 1.08995 * 109.47452 * 300.00102 * 1 2 3 31 31 H 1.09008 * 109.46734 * 60.00642 * 1 2 3 32 32 H 1.09002 * 109.47274 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47452 * 239.99898 * 2 1 3 34 34 H 1.09006 * 109.47068 * 119.99773 * 2 1 3 35 35 H 1.08999 * 109.47404 * 300.00073 * 6 4 3 36 36 H 1.09007 * 109.47439 * 59.99805 * 6 4 3 37 37 H 1.08998 * 109.47034 * 179.97438 * 6 4 3 38 38 H 0.97002 * 119.99864 * 0.02562 * 9 7 4 39 39 H 1.09000 * 109.47492 * 300.00503 * 10 9 7 40 40 H 1.09006 * 109.46948 * 60.00327 * 10 9 7 41 41 H 1.08996 * 110.54740 * 261.31059 * 13 11 10 42 42 H 1.08997 * 110.54752 * 24.11493 * 13 11 10 43 43 H 1.09001 * 110.39143 * 217.47200 * 15 14 13 44 44 H 1.08998 * 110.49326 * 95.12751 * 15 14 13 45 45 H 1.08995 * 109.48774 * 302.43935 * 17 14 13 46 46 H 1.08993 * 109.48455 * 62.49281 * 17 14 13 47 47 H 1.09001 * 109.59305 * 186.54345 * 18 17 14 48 48 H 1.09000 * 109.72271 * 66.16454 * 18 17 14 49 49 H 0.97009 * 119.99652 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.59500 * 186.07363 * 28 19 18 51 51 H 1.09006 * 109.72715 * 65.68555 * 28 19 18 52 52 H 1.09009 * 109.48262 * 297.57160 * 29 14 13 53 53 H 1.09001 * 109.48392 * 57.61631 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6016 0.5147 6 6 3.9398 1.5001 -1.4417 7 6 3.8342 2.7265 0.7109 8 8 2.9853 3.4600 1.1718 9 7 5.1382 3.0440 0.8341 10 6 5.5303 4.2748 1.5252 11 6 7.0555 4.3957 1.5257 12 1 7.4343 4.4134 0.5037 13 6 7.4941 5.6694 2.2843 14 6 8.7758 5.2348 3.0225 15 6 8.9678 3.7583 2.6302 16 8 7.6463 3.3021 2.2620 17 6 9.9631 6.0649 2.5494 18 6 11.2367 5.5766 3.2490 19 7 11.0109 5.5874 4.7008 20 6 11.8664 6.2578 5.5337 21 1 11.5088 6.6465 6.4758 22 6 13.1931 6.4381 5.1672 23 7 13.9061 7.3930 5.7257 24 14 13.9663 5.3253 3.8814 25 1 13.8394 5.9539 2.5420 26 1 15.4027 5.1245 4.1998 27 1 13.2713 4.0130 3.8800 28 6 9.8512 4.8666 5.2434 29 6 8.5875 5.3601 4.5298 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.6481 0.5842 -1.9555 36 1 3.5075 2.3586 -1.9559 37 1 5.0264 1.5866 -1.4413 38 1 5.8171 2.4576 0.4652 39 1 5.0976 5.1335 1.0118 40 1 5.1682 4.2456 2.5529 41 1 7.7090 6.4767 1.5843 42 1 6.7273 5.9735 2.9967 43 1 9.3443 3.1859 3.4780 44 1 9.6488 3.6739 1.7834 45 1 10.0762 5.9558 1.4708 46 1 9.7937 7.1136 2.7932 47 1 12.0660 6.2398 3.0031 48 1 11.4701 4.5631 2.9229 49 1 14.8332 7.5192 5.4692 50 1 9.7671 5.0616 6.3125 51 1 9.9716 3.7964 5.0753 52 1 8.4082 6.4039 4.7882 53 1 7.7349 4.7566 4.8411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569579398.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -134.048199 kcal Electronic energy + Delta-G solvation = -30664.285640 eV Core-core repulsion = 26535.510615 eV Total energy + Delta-G solvation = -4128.775025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58212 -40.91271 -38.86743 -38.39025 -35.92853 -35.03378 -33.55455 -33.26629 -32.02463 -31.81269 -30.80340 -28.50122 -26.74464 -25.85100 -24.97603 -24.37258 -23.60110 -23.02468 -22.14801 -21.27470 -19.99173 -18.72779 -18.45023 -18.11889 -17.33685 -17.08423 -16.95324 -16.58435 -16.41542 -16.33247 -15.89384 -15.70788 -15.24247 -15.12531 -14.86038 -14.67441 -14.34563 -14.28235 -14.21143 -14.00842 -13.66548 -13.52674 -13.34245 -13.20675 -13.15918 -12.91149 -12.86924 -12.55648 -12.39253 -12.35909 -12.29450 -12.20708 -12.05988 -12.01359 -11.62957 -11.55093 -11.13369 -11.10130 -10.99079 -10.70339 -10.60169 -10.47014 -10.16629 -8.90034 -8.15856 -5.47321 1.29588 1.42064 1.51122 1.53340 1.82453 2.42193 2.79938 2.96555 3.06786 3.34912 3.49986 3.64434 3.72972 3.82882 3.91787 4.00444 4.02053 4.12953 4.15784 4.19588 4.32078 4.32464 4.35864 4.48485 4.50537 4.56317 4.60764 4.62611 4.70150 4.71285 4.74802 4.79986 4.83589 4.89004 4.89369 5.00643 5.01490 5.05583 5.16380 5.19889 5.22238 5.25225 5.26547 5.27938 5.36419 5.51577 5.86973 5.88043 6.11361 6.13275 6.51778 6.93646 7.18273 7.64172 8.03824 9.04229 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.001973 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.001485 B =14187.774802 C =14402.151161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.393 6.393 4 C 0.071 3.929 5 H 0.112 0.888 6 C -0.164 4.164 7 C 0.508 3.492 8 O -0.577 6.577 9 N -0.708 5.708 10 C 0.131 3.869 11 C 0.071 3.929 12 H 0.097 0.903 13 C -0.134 4.134 14 C -0.077 4.077 15 C 0.057 3.943 16 O -0.378 6.378 17 C -0.112 4.112 18 C 0.118 3.882 19 N -0.618 5.618 20 C -0.249 4.249 21 H 0.046 0.954 22 C -0.037 4.037 23 N -0.959 5.959 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.314 1.314 27 H -0.258 1.258 28 C 0.141 3.859 29 C -0.110 4.110 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.417 0.583 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.037 0.963 49 H 0.261 0.739 50 H 0.049 0.951 51 H 0.038 0.962 52 H 0.052 0.948 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.186 -16.226 -18.421 32.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.010 3.990 5 H 0.129 0.871 6 C -0.222 4.222 7 C 0.295 3.705 8 O -0.456 6.456 9 N -0.362 5.362 10 C 0.007 3.993 11 C 0.013 3.987 12 H 0.115 0.885 13 C -0.172 4.172 14 C -0.077 4.077 15 C -0.020 4.020 16 O -0.298 6.298 17 C -0.151 4.151 18 C -0.007 4.007 19 N -0.343 5.343 20 C -0.379 4.379 21 H 0.064 0.936 22 C -0.232 4.232 23 N -0.605 5.605 24 Si 0.778 3.222 25 H -0.198 1.198 26 H -0.243 1.243 27 H -0.182 1.182 28 C 0.016 3.984 29 C -0.148 4.148 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.255 0.745 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.056 0.944 52 H 0.071 0.929 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.896 -15.695 -18.013 32.408 hybrid contribution 1.481 -0.084 0.110 1.487 sum -20.415 -15.779 -17.904 31.405 Atomic orbital electron populations 1.21771 0.93259 1.03432 1.02403 1.22819 0.96258 0.82290 1.01482 1.88022 1.19498 1.28549 1.95183 1.22019 0.83413 0.95526 0.98075 0.87075 1.22234 1.02742 1.04070 0.93143 1.21030 0.82459 0.87792 0.79268 1.90704 1.51665 1.53301 1.49885 1.45751 1.06874 1.25404 1.58191 1.21422 0.92802 0.87454 0.97602 1.23269 0.91840 0.86623 0.96941 0.88479 1.23002 0.96429 0.97958 0.99822 1.21322 0.95088 0.95577 0.95726 1.23539 0.84733 0.93472 1.00239 1.89124 1.28696 1.37848 1.74119 1.21905 0.93934 0.99353 0.99881 1.21457 0.97293 0.98340 0.83591 1.44435 1.28523 1.59671 1.01624 1.18853 0.90053 1.26923 1.02028 0.93572 1.25939 0.96724 0.99321 1.01201 1.69984 1.09688 1.32597 1.48277 0.85870 0.76111 0.81088 0.79145 1.19807 1.24296 1.18248 1.21165 0.86221 0.94226 0.96750 1.21816 0.97611 1.01130 0.94279 0.93221 0.92237 0.88685 0.90998 0.92478 0.89460 0.92523 0.88818 0.74549 0.89604 0.92316 0.88529 0.90189 0.89523 0.91066 0.89455 0.92566 0.93508 0.94505 0.93037 0.93235 0.94416 0.92896 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.58 6.47 71.98 0.47 1.04 16 3 O -0.39 -7.87 9.52 -129.94 -1.24 -9.11 16 4 C 0.07 1.05 3.14 29.84 0.09 1.14 16 5 H 0.11 1.08 7.79 -2.39 -0.02 1.06 16 6 C -0.16 -1.48 9.42 71.98 0.68 -0.80 16 7 C 0.51 10.94 7.23 87.65 0.63 11.58 16 8 O -0.58 -18.53 16.50 16.01 0.26 -18.27 16 9 N -0.71 -11.52 5.39 -463.06 -2.50 -14.02 16 10 C 0.13 2.38 5.30 86.38 0.46 2.84 16 11 C 0.07 1.19 3.35 31.14 0.10 1.30 16 12 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 13 C -0.13 -2.58 5.91 31.53 0.19 -2.39 16 14 C -0.08 -1.94 0.69 -51.85 -0.04 -1.97 16 15 C 0.06 1.33 5.63 72.31 0.41 1.74 16 16 O -0.38 -8.09 11.27 -148.98 -1.68 -9.77 16 17 C -0.11 -3.30 4.55 30.50 0.14 -3.16 16 18 C 0.12 4.62 3.91 86.40 0.34 4.96 16 19 N -0.62 -28.01 2.76 -698.68 -1.93 -29.94 16 20 C -0.25 -14.03 10.03 84.03 0.84 -13.18 16 21 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 22 C -0.04 -2.17 5.23 84.86 0.44 -1.73 16 23 N -0.96 -60.26 13.97 21.65 0.30 -59.96 16 24 Si 0.95 45.55 24.35 68.60 1.67 47.22 16 25 H -0.27 -12.13 6.63 99.48 0.66 -11.47 16 26 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 27 H -0.26 -11.69 6.64 99.48 0.66 -11.03 16 28 C 0.14 5.24 6.20 86.39 0.54 5.77 16 29 C -0.11 -3.26 4.70 30.50 0.14 -3.11 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.54 7.87 -2.39 -0.02 0.52 16 34 H 0.06 0.60 8.08 -2.38 -0.02 0.58 16 35 H 0.09 0.51 7.87 -2.39 -0.02 0.49 16 36 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.09 0.44 7.56 -2.39 -0.02 0.42 16 38 H 0.42 4.49 7.87 -92.71 -0.73 3.76 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.10 1.60 7.72 -2.39 -0.02 1.58 16 42 H 0.08 1.58 7.45 -2.39 -0.02 1.56 16 43 H 0.09 2.27 5.99 -2.39 -0.01 2.26 16 44 H 0.07 1.53 7.71 -2.39 -0.02 1.51 16 45 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 46 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.05 2.08 4.47 -2.39 -0.01 2.07 16 48 H 0.04 1.36 6.42 -2.39 -0.02 1.35 16 49 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 50 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 51 H 0.04 1.31 6.44 -2.38 -0.02 1.30 16 52 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 53 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -77.03 403.25 1.14 -75.89 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.07 Total: 14.92 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.17 Total: 3.03 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.12 Total: -103.91 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -2.65 Total: -37.14 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.67 Total: 47.22 kcal Total: -77.03 1.14 -75.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569579398.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.161 kcal (2) G-P(sol) polarization free energy of solvation -77.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds