Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47212 * 2 1 4 4 C 1.42899 * 114.00245 * 180.02562 * 3 2 1 5 5 C 1.53780 * 113.61494 * 209.99718 * 4 3 2 6 6 C 1.53778 * 87.08457 * 220.01885 * 5 4 3 7 7 C 1.53003 * 113.61616 * 139.97916 * 6 5 4 8 8 C 1.50701 * 109.46871 * 176.53074 * 7 6 5 9 9 O 1.21277 * 119.99936 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99403 * 179.97438 * 8 7 6 11 11 C 1.46932 * 120.62573 * 179.97438 * 10 8 7 12 12 C 1.53189 * 108.77592 * 233.63105 * 11 10 8 13 13 C 1.53043 * 109.31439 * 305.37036 * 12 11 10 14 14 O 1.42898 * 109.46024 * 301.35607 * 13 12 11 15 15 C 1.53006 * 109.45814 * 181.38435 * 13 12 11 16 16 N 1.46500 * 109.46998 * 184.99823 * 15 13 12 17 17 C 1.36931 * 120.00396 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99774 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00545 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00512 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99852 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47136 * 90.00264 * 21 19 17 23 23 H 1.48499 * 109.47548 * 210.00043 * 21 19 17 24 24 H 1.48496 * 109.47428 * 330.00419 * 21 19 17 25 25 C 1.53037 * 109.54135 * 61.36523 * 13 12 11 26 26 C 1.46924 * 120.63345 * 0.02585 * 10 8 7 27 27 C 1.53788 * 87.16965 * 25.38925 * 6 5 4 28 28 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47025 * 300.00027 * 1 2 3 30 30 H 1.08997 * 109.47078 * 60.00208 * 1 2 3 31 31 H 1.09000 * 109.47025 * 239.99973 * 2 1 3 32 32 H 1.08997 * 109.47078 * 119.99792 * 2 1 3 33 33 H 1.08992 * 112.90685 * 341.25126 * 4 3 2 34 34 H 1.08997 * 113.61124 * 105.46926 * 5 4 3 35 35 H 1.09006 * 113.69328 * 334.58095 * 5 4 3 36 36 H 1.08997 * 113.61450 * 270.80467 * 6 5 4 37 37 H 1.09003 * 109.46594 * 56.53471 * 7 6 5 38 38 H 1.08996 * 109.47053 * 296.53150 * 7 6 5 39 39 H 1.08997 * 109.58232 * 113.84551 * 11 10 8 40 40 H 1.08992 * 109.58821 * 353.42548 * 11 10 8 41 41 H 1.08995 * 109.50151 * 185.41691 * 12 11 10 42 42 H 1.09003 * 109.49700 * 65.31889 * 12 11 10 43 43 H 0.96698 * 114.00272 * 180.02562 * 14 13 12 44 44 H 1.08993 * 109.46955 * 305.00048 * 15 13 12 45 45 H 1.09000 * 109.47050 * 64.99877 * 15 13 12 46 46 H 0.97010 * 119.99909 * 359.97438 * 16 15 13 47 47 H 0.96997 * 120.00065 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.49633 * 58.58307 * 25 13 12 49 49 H 1.08991 * 109.50061 * 178.68396 * 25 13 12 50 50 H 1.08998 * 109.58360 * 246.14876 * 26 10 8 51 51 H 1.08999 * 109.58623 * 6.57990 * 26 10 8 52 52 H 1.09000 * 113.60890 * 89.16316 * 27 6 5 53 53 H 1.08995 * 113.61378 * 220.05704 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.9489 2.7252 0.7038 6 6 4.9896 2.8315 -0.4233 7 6 5.2307 4.2647 -0.9017 8 6 6.3221 4.2705 -1.9409 9 8 6.8542 3.2306 -2.2670 10 7 6.7059 5.4311 -2.5084 11 6 7.7688 5.4528 -3.5226 12 6 8.8401 6.4599 -3.0926 13 6 8.1843 7.8195 -2.8400 14 8 7.5273 8.2596 -4.0302 15 6 9.2564 8.8367 -2.4437 16 7 8.6173 10.1056 -2.0864 17 6 9.3828 11.1719 -1.6964 18 1 10.4577 11.0773 -1.6517 19 6 8.7772 12.3740 -1.3574 20 7 9.5130 13.3988 -0.9820 21 14 6.9180 12.5374 -1.4340 22 1 6.3334 12.1589 -0.1224 23 1 6.5571 13.9429 -1.7496 24 1 6.3852 11.6404 -2.4907 25 6 7.1602 7.6918 -1.7100 26 6 6.0702 6.6986 -2.1240 27 6 4.0038 2.0456 -1.3040 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9290 0.5459 0.3218 34 1 4.3849 2.5316 1.6839 35 1 3.2312 3.5456 0.7144 36 1 5.9144 2.2933 -0.2158 37 1 5.5305 4.8842 -0.0564 38 1 4.3133 4.6619 -1.3360 39 1 7.3507 5.7520 -4.4837 40 1 8.2128 4.4611 -3.6079 41 1 9.5860 6.5567 -3.8814 42 1 9.3202 6.1121 -2.1779 43 1 7.0888 9.1171 -3.9433 44 1 9.8172 8.4589 -1.5888 45 1 9.9348 8.9949 -3.2821 46 1 7.6518 10.1907 -2.1269 47 1 9.0898 14.2389 -0.7455 48 1 7.6561 7.3323 -0.8084 49 1 6.7104 8.6652 -1.5149 50 1 5.5134 7.0997 -2.9709 51 1 5.3935 6.5288 -1.2865 52 1 3.3005 2.6792 -1.8444 53 1 4.4842 1.3044 -1.9426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570419507.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -125.577771 kcal Electronic energy + Delta-G solvation = -30431.709863 eV Core-core repulsion = 26303.302143 eV Total energy + Delta-G solvation = -4128.407719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57586 -40.50137 -39.54718 -37.43048 -36.79101 -35.86828 -33.68356 -33.07858 -32.08440 -31.90768 -30.55919 -28.42953 -26.63276 -25.54079 -24.51564 -24.20858 -23.62346 -22.87971 -21.49462 -20.48773 -19.99306 -19.94340 -18.15031 -17.88103 -17.33332 -16.85132 -16.69508 -16.59645 -16.53634 -16.20515 -16.05452 -15.69260 -15.26597 -14.90073 -14.88026 -14.73874 -14.36390 -14.23102 -14.01629 -13.74107 -13.50950 -13.47792 -13.34906 -13.24602 -13.08493 -12.98601 -12.82799 -12.71475 -12.28239 -12.25096 -12.21255 -12.14745 -12.09380 -11.87726 -11.75094 -11.57989 -11.37995 -11.24307 -11.00646 -10.87074 -10.65972 -10.32912 -9.62535 -9.34224 -8.02731 -5.38708 1.36913 1.44183 1.51329 1.65808 2.01823 2.48995 2.79306 3.20247 3.32583 3.40885 3.45166 3.64063 3.67914 3.78348 3.83855 3.87857 3.90534 4.03578 4.11269 4.15533 4.20656 4.34225 4.35973 4.40110 4.50232 4.52259 4.61804 4.64505 4.70533 4.74711 4.76006 4.83974 4.85485 4.86960 4.89463 4.91098 4.98847 5.02846 5.04762 5.09941 5.12584 5.25109 5.28179 5.30543 5.46351 5.54294 5.73733 6.18636 6.37062 6.44944 6.72173 7.05922 7.19275 7.77447 7.98981 9.18586 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.002127 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.757060 B =13162.929520 C =14199.966614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.394 6.394 4 C 0.060 3.940 5 C -0.123 4.123 6 C -0.090 4.090 7 C -0.125 4.125 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.609 5.609 11 C 0.123 3.877 12 C -0.111 4.111 13 C 0.135 3.865 14 O -0.561 6.561 15 C 0.131 3.869 16 N -0.748 5.748 17 C -0.240 4.240 18 H 0.049 0.951 19 C -0.065 4.065 20 N -0.985 5.985 21 Si 0.958 3.042 22 H -0.274 1.274 23 H -0.300 1.300 24 H -0.239 1.239 25 C -0.157 4.157 26 C 0.114 3.886 27 C -0.148 4.148 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.382 0.618 44 H 0.031 0.969 45 H 0.023 0.977 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.113 0.887 52 H 0.084 0.916 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.766 -26.749 1.328 32.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.160 4.160 6 C -0.109 4.109 7 C -0.164 4.164 8 C 0.302 3.698 9 O -0.463 6.463 10 N -0.342 5.342 11 C 0.000 4.000 12 C -0.150 4.150 13 C 0.094 3.906 14 O -0.368 6.368 15 C 0.004 3.996 16 N -0.395 5.395 17 C -0.371 4.371 18 H 0.068 0.932 19 C -0.256 4.256 20 N -0.635 5.635 21 Si 0.783 3.217 22 H -0.199 1.199 23 H -0.227 1.227 24 H -0.163 1.163 25 C -0.196 4.196 26 C -0.008 4.008 27 C -0.186 4.186 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.203 0.797 47 H 0.067 0.933 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.099 0.901 51 H 0.131 0.869 52 H 0.102 0.898 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.189 -27.610 0.964 32.538 hybrid contribution -0.202 1.243 0.118 1.265 sum -17.391 -26.367 1.082 31.605 Atomic orbital electron populations 1.21765 0.93087 1.03247 1.02644 1.22677 0.96273 0.83356 1.00544 1.87924 1.21255 1.27528 1.94689 1.23768 0.80628 0.98656 0.96733 1.23253 0.97091 0.97674 0.97992 1.21995 0.97513 0.94595 0.96833 1.21739 0.97712 0.99033 0.97917 1.21251 0.83980 0.82390 0.82217 1.90649 1.58171 1.32764 1.64741 1.48241 1.37760 1.07469 1.40716 1.21380 0.88003 0.99481 0.91138 1.21803 0.98009 0.91986 1.03200 1.21273 0.91217 0.93137 0.84975 1.86428 1.72967 1.41466 1.35894 1.21437 0.95232 0.85514 0.97398 1.42534 1.04934 1.09532 1.82548 1.18964 0.91199 0.90570 1.36349 0.93247 1.25610 1.03260 0.95310 1.01456 1.69907 1.36692 1.03412 1.53462 0.85389 0.79891 0.77234 0.79139 1.19939 1.22722 1.16277 1.22516 0.97746 1.00535 0.98801 1.21831 0.94662 0.82219 1.02089 1.23547 0.97889 1.00027 0.97139 0.89423 0.92153 0.92499 0.93215 0.92483 0.88804 0.89743 0.88552 0.89371 0.86561 0.86951 0.90933 0.90006 0.89696 0.90026 0.76954 0.95067 0.95889 0.79706 0.93318 0.90332 0.90263 0.90052 0.86871 0.89757 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.60 6.50 71.98 0.47 1.07 16 3 O -0.39 -6.81 10.36 -148.98 -1.54 -8.35 16 4 C 0.06 0.89 4.31 31.18 0.13 1.03 16 5 C -0.12 -1.58 7.47 31.12 0.23 -1.35 16 6 C -0.09 -1.42 3.11 -10.26 -0.03 -1.46 16 7 C -0.12 -1.84 3.87 29.85 0.12 -1.73 16 8 C 0.51 11.41 7.70 87.66 0.67 12.08 16 9 O -0.58 -17.27 15.20 -3.02 -0.05 -17.32 16 10 N -0.61 -12.92 2.97 -818.99 -2.43 -15.36 16 11 C 0.12 2.86 6.19 86.36 0.53 3.39 16 12 C -0.11 -2.68 5.11 30.67 0.16 -2.52 16 13 C 0.14 3.63 0.71 -10.76 -0.01 3.62 16 14 O -0.56 -15.23 11.70 -148.98 -1.74 -16.97 16 15 C 0.13 4.69 5.43 86.38 0.47 5.16 16 16 N -0.75 -31.99 4.87 -343.46 -1.67 -33.66 16 17 C -0.24 -13.25 10.47 84.03 0.88 -12.37 16 18 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 19 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 20 N -0.98 -61.94 13.97 21.65 0.30 -61.64 16 21 Si 0.96 42.12 27.74 68.60 1.90 44.02 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 24 H -0.24 -8.82 6.52 99.48 0.65 -8.17 16 25 C -0.16 -3.59 4.87 30.66 0.15 -3.44 16 26 C 0.11 2.01 6.10 86.35 0.53 2.54 16 27 C -0.15 -2.52 7.48 31.18 0.23 -2.28 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 1.21 7.87 -2.39 -0.02 1.19 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 1.19 8.10 -2.38 -0.02 1.17 16 36 H 0.09 1.65 7.73 -2.39 -0.02 1.63 16 37 H 0.12 1.31 7.69 -2.39 -0.02 1.29 16 38 H 0.11 1.30 7.67 -2.39 -0.02 1.28 16 39 H 0.07 1.73 7.81 -2.39 -0.02 1.71 16 40 H 0.08 2.05 7.00 -2.39 -0.02 2.03 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.38 9.71 8.19 -74.06 -0.61 9.11 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.37 14.17 3.41 -92.70 -0.32 13.85 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 48 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.08 1.90 6.53 -2.39 -0.02 1.89 16 50 H 0.08 1.40 7.81 -2.39 -0.02 1.38 16 51 H 0.11 1.35 5.93 -2.39 -0.01 1.34 16 52 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 53 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -72.39 410.40 0.42 -71.97 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.08 Total: 37.58 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.74 Total: -0.27 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.81 Total: -110.66 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -3.33 Total: -42.64 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.90 Total: 44.02 kcal Total: -72.39 0.42 -71.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570419507.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.607 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds