Wall clock time and date at job start Sat Apr 11 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47179 * 2 1 4 4 C 1.42898 * 113.99958 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.87285 * 21.77094 * 4 3 2 6 6 C 1.53885 * 113.64109 * 250.48861 * 4 3 2 7 7 C 1.53885 * 87.18373 * 220.40237 * 6 4 3 8 8 H 1.08999 * 113.64103 * 270.41425 * 7 6 4 9 9 N 1.46498 * 113.63943 * 139.51169 * 7 6 4 10 10 C 1.34779 * 119.99978 * 104.50812 * 9 7 6 11 11 O 1.21279 * 119.99890 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00151 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.46862 * 39.99824 * 12 10 9 14 14 N 1.46901 * 109.47246 * 159.99938 * 12 10 9 15 15 C 1.53006 * 109.46914 * 279.99876 * 12 10 9 16 16 C 1.52999 * 109.46626 * 174.99639 * 15 12 10 17 17 C 1.53006 * 109.47000 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47240 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99861 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99980 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46946 * 59.99897 * 22 20 18 24 24 H 1.48506 * 109.46938 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46921 * 299.99580 * 22 20 18 26 26 C 1.53192 * 86.91331 * 25.00537 * 7 6 4 27 27 C 1.53853 * 114.62444 * 218.80891 * 26 7 6 28 28 C 1.55438 * 102.05354 * 208.57647 * 27 26 7 29 29 C 1.55001 * 101.01137 * 33.66484 * 28 27 26 30 30 O 1.42619 * 115.40499 * 91.98017 * 26 7 6 31 31 H 1.09000 * 109.47345 * 300.00510 * 1 2 3 32 32 H 1.09000 * 109.46673 * 60.00767 * 1 2 3 33 33 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47843 * 239.99343 * 2 1 3 35 35 H 1.09007 * 109.47094 * 119.99238 * 2 1 3 36 36 H 1.08999 * 113.59628 * 105.82759 * 6 4 3 37 37 H 1.08999 * 113.59951 * 334.97912 * 6 4 3 38 38 H 0.96996 * 120.00421 * 284.50120 * 9 7 6 39 39 H 1.00906 * 110.99754 * 59.99985 * 14 12 10 40 40 H 1.00894 * 110.99732 * 183.95542 * 14 12 10 41 41 H 1.08993 * 109.46955 * 295.00111 * 15 12 10 42 42 H 1.09000 * 109.47050 * 54.99940 * 15 12 10 43 43 H 1.08993 * 109.47839 * 299.99931 * 16 15 12 44 44 H 1.09000 * 109.47160 * 60.00369 * 16 15 12 45 45 H 1.09004 * 109.47107 * 300.00294 * 17 16 15 46 46 H 1.09000 * 109.46866 * 60.00185 * 17 16 15 47 47 H 0.96992 * 120.00038 * 179.97438 * 21 20 18 48 48 H 1.09004 * 110.91464 * 326.76414 * 27 26 7 49 49 H 1.09004 * 110.91904 * 90.38411 * 27 26 7 50 50 H 1.09000 * 111.10908 * 275.73027 * 28 27 26 51 51 H 1.08998 * 111.14964 * 151.61852 * 28 27 26 52 52 H 1.09003 * 110.29966 * 204.94257 * 29 28 27 53 53 H 1.09002 * 110.29782 * 82.79164 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9270 0.5637 -0.3716 6 6 4.0083 1.9783 1.3295 7 6 4.9874 2.8172 0.4894 8 1 5.9169 2.2988 0.2544 9 7 5.2054 4.1670 1.0153 10 6 6.3516 4.4621 1.6600 11 8 7.2023 3.6099 1.8052 12 6 6.5761 5.8507 2.2005 13 1 5.6486 6.2271 2.6318 14 7 7.6170 5.8107 3.2364 15 6 7.0221 6.7741 1.0648 16 6 7.1296 8.2084 1.5863 17 6 7.5749 9.1319 0.4505 18 6 7.6814 10.5446 0.9642 19 1 7.4546 10.7620 1.9975 20 6 8.0684 11.5596 0.1151 21 7 8.3451 11.2947 -1.1432 22 14 8.2012 13.3106 0.7520 23 1 9.1979 13.3632 1.8515 24 1 8.6333 14.2069 -0.3505 25 1 6.8784 13.7537 1.2612 26 6 3.9469 2.7559 -0.6333 27 6 4.5358 2.5881 -2.0447 28 6 3.4630 3.2834 -2.9289 29 6 2.9838 4.4119 -1.9804 30 8 3.0148 3.8349 -0.6632 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8935 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 4.4951 1.2057 1.9246 37 1 3.3044 2.5777 1.9069 38 1 4.5249 4.8485 0.8994 39 1 8.4875 5.4649 2.8611 40 1 7.7408 6.7181 3.6598 41 1 7.9935 6.4489 0.6925 42 1 6.2916 6.7350 0.2568 43 1 6.1582 8.5335 1.9586 44 1 7.8601 8.2475 2.3944 45 1 8.5463 8.8070 0.0777 46 1 6.8441 9.0928 -0.3573 47 1 8.6170 12.0088 -1.7406 48 1 5.4970 3.0953 -2.1281 49 1 4.6300 1.5336 -2.3042 50 1 2.6486 2.5998 -3.1685 51 1 3.9069 3.6946 -3.8355 52 1 1.9688 4.7156 -2.2366 53 1 3.6602 5.2649 -2.0358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578091292.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:29 Heat of formation + Delta-G solvation = -147.029631 kcal Electronic energy + Delta-G solvation = -30698.357371 eV Core-core repulsion = 26569.019429 eV Total energy + Delta-G solvation = -4129.337942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06461 -40.56916 -38.67357 -37.53521 -36.85056 -35.26512 -34.23861 -33.07665 -32.99065 -31.72260 -29.47963 -28.63156 -27.34854 -25.35795 -24.09423 -23.82705 -23.55337 -22.60506 -21.84829 -21.21241 -20.56009 -18.56838 -18.45057 -18.42939 -17.37493 -17.14139 -16.73285 -16.54386 -16.43607 -16.19329 -15.90151 -15.87170 -15.37880 -15.09902 -14.73974 -14.60349 -14.46951 -14.24902 -14.09723 -13.92929 -13.66378 -13.62000 -13.41536 -13.05207 -12.91247 -12.76313 -12.66424 -12.55666 -12.46709 -12.42941 -12.35405 -12.21115 -11.85869 -11.75706 -11.62841 -11.50803 -11.43347 -11.28092 -10.82909 -10.61542 -10.55588 -10.29865 -9.95583 -9.66997 -8.20437 -6.31623 1.40068 1.42750 1.50477 1.55768 1.98473 2.40582 2.64109 2.81686 3.12722 3.27375 3.45243 3.62073 3.65385 3.72435 3.75418 3.90029 3.99216 4.05046 4.07599 4.09305 4.21726 4.25721 4.33926 4.40034 4.42147 4.52682 4.55593 4.72253 4.75456 4.76539 4.77743 4.86102 4.89545 4.93694 4.99277 5.00854 5.05438 5.06640 5.16738 5.20693 5.22765 5.29503 5.43163 5.51245 5.72457 5.84530 5.99433 6.04958 6.23598 6.38604 6.48790 6.52731 6.85736 7.20021 7.37860 8.90934 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.002252 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.414142 B =12430.910415 C =13438.125182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.377 6.377 4 C 0.073 3.927 5 H 0.121 0.879 6 C -0.163 4.163 7 C 0.115 3.885 8 H 0.117 0.883 9 N -0.702 5.702 10 C 0.526 3.474 11 O -0.569 6.569 12 C 0.084 3.916 13 H 0.116 0.884 14 N -0.831 5.831 15 C -0.132 4.132 16 C -0.095 4.095 17 C 0.025 3.975 18 C -0.542 4.542 19 H 0.063 0.937 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.089 3.911 27 C -0.142 4.142 28 C -0.146 4.146 29 C 0.040 3.960 30 O -0.357 6.357 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.413 0.587 39 H 0.346 0.654 40 H 0.356 0.644 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.056 0.944 45 H -0.014 1.014 46 H -0.009 1.009 47 H 0.263 0.737 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.094 0.906 52 H 0.095 0.905 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.687 -24.650 -1.198 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.296 6.296 4 C 0.014 3.986 5 H 0.138 0.862 6 C -0.202 4.202 7 C 0.009 3.991 8 H 0.135 0.865 9 N -0.353 5.353 10 C 0.313 3.687 11 O -0.448 6.448 12 C -0.032 4.032 13 H 0.134 0.866 14 N -0.363 5.363 15 C -0.172 4.172 16 C -0.133 4.133 17 C -0.012 4.012 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.788 3.212 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.190 1.190 26 C 0.048 3.952 27 C -0.180 4.180 28 C -0.183 4.183 29 C -0.036 4.036 30 O -0.276 6.276 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.249 0.751 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.004 0.996 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.123 0.877 50 H 0.104 0.896 51 H 0.113 0.887 52 H 0.113 0.887 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.770 -25.464 -0.696 29.446 hybrid contribution 0.767 1.900 -0.822 2.207 sum -14.003 -23.565 -1.518 27.453 Atomic orbital electron populations 1.21744 0.93290 1.03170 1.02438 1.22747 0.96192 0.83270 1.00888 1.88047 1.19691 1.27356 1.94460 1.23937 0.82270 0.97121 0.95305 0.86190 1.23915 0.98253 1.00015 0.98021 1.22690 0.97745 0.83994 0.94629 0.86494 1.45650 1.19313 1.13357 1.57003 1.20793 0.81220 0.89979 0.76748 1.90624 1.45056 1.50527 1.58578 1.21365 0.98678 0.90702 0.92418 0.86608 1.58698 1.11895 1.32909 1.32793 1.22201 1.01398 0.95421 0.98157 1.21437 1.00903 0.92607 0.98321 1.18991 0.94340 0.93868 0.94035 1.21692 1.45425 0.94154 0.96758 0.91924 1.26000 0.94989 1.03963 0.95085 1.70093 1.47354 1.34244 1.05725 0.85517 0.79048 0.78684 0.77908 1.19224 1.21041 1.19039 1.23493 0.88558 0.88157 0.95015 1.23090 0.99210 1.03633 0.92039 1.23223 0.98802 0.97438 0.98843 1.23655 1.02473 0.96070 0.81366 1.88302 1.60525 1.46908 1.31825 0.92823 0.92409 0.89239 0.92017 0.92817 0.90084 0.89860 0.75069 0.84063 0.82797 0.93110 0.91365 0.92020 0.92507 0.99599 0.99031 0.92846 0.90383 0.87741 0.89618 0.88697 0.88682 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 71.98 0.74 -0.94 16 2 C 0.05 0.57 6.51 71.98 0.47 1.04 16 3 O -0.38 -7.14 10.02 -135.69 -1.36 -8.50 16 4 C 0.07 1.20 3.82 30.96 0.12 1.31 16 5 H 0.12 1.34 7.68 -2.39 -0.02 1.33 16 6 C -0.16 -3.19 7.71 31.19 0.24 -2.95 16 7 C 0.12 2.45 3.76 45.35 0.17 2.62 16 8 H 0.12 2.60 7.52 -2.39 -0.02 2.59 16 9 N -0.70 -16.97 5.35 -440.82 -2.36 -19.32 16 10 C 0.53 15.37 7.08 87.66 0.62 15.99 16 11 O -0.57 -20.08 15.89 -3.03 -0.05 -20.13 16 12 C 0.08 2.33 3.21 44.17 0.14 2.47 16 13 H 0.12 2.86 8.14 -2.39 -0.02 2.85 16 14 N -0.83 -23.32 8.94 -171.79 -1.54 -24.85 16 15 C -0.13 -4.25 4.84 30.60 0.15 -4.10 16 16 C -0.09 -3.63 4.92 30.60 0.15 -3.48 16 17 C 0.02 1.28 4.97 29.85 0.15 1.43 16 18 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 19 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 20 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 21 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 22 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.09 1.64 1.38 -10.37 -0.01 1.63 16 27 C -0.14 -2.08 6.35 31.72 0.20 -1.87 16 28 C -0.15 -1.99 7.16 32.12 0.23 -1.77 16 29 C 0.04 0.72 7.79 72.67 0.57 1.28 16 30 O -0.36 -7.80 9.74 -135.69 -1.32 -9.12 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.41 9.35 7.82 -92.71 -0.73 8.63 16 39 H 0.35 10.16 8.58 -89.69 -0.77 9.39 16 40 H 0.36 9.23 7.55 -89.70 -0.68 8.55 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.06 2.07 6.87 -2.39 -0.02 2.06 16 45 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 47 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 48 H 0.08 1.27 8.11 -2.38 -0.02 1.25 16 49 H 0.10 1.08 7.79 -2.39 -0.02 1.06 16 50 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.37 424.81 -0.95 -72.32 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -1.27 Total: 37.27 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.63 Total: -17.20 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -3.61 Total: -100.64 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -2.73 Total: -37.75 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.37 -0.95 -72.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578091292.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.706 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds