Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.47089 * 2 1 4 4 C 1.42894 * 113.99873 * 179.97438 * 3 2 1 5 5 H 1.08996 * 112.87706 * 21.78383 * 4 3 2 6 6 C 1.53898 * 113.64472 * 250.49660 * 4 3 2 7 7 C 1.53895 * 87.19228 * 220.44423 * 6 4 3 8 8 H 1.09001 * 113.64349 * 270.37722 * 7 6 4 9 9 N 1.46500 * 113.64554 * 139.46653 * 7 6 4 10 10 C 1.34774 * 120.00108 * 157.66493 * 9 7 6 11 11 O 1.21277 * 119.99858 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99913 * 180.02562 * 10 9 7 13 13 H 1.09000 * 109.47606 * 319.99654 * 12 10 9 14 14 N 1.46903 * 109.46927 * 199.99402 * 12 10 9 15 15 C 1.53006 * 109.47314 * 80.00064 * 12 10 9 16 16 C 1.53001 * 109.47099 * 184.99888 * 15 12 10 17 17 C 1.52995 * 109.47044 * 179.97438 * 16 15 12 18 18 C 1.50699 * 109.47281 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99760 * 359.72190 * 18 17 16 20 20 C 1.37873 * 120.00504 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99522 * 359.71842 * 20 18 17 22 22 Si 1.86793 * 120.00470 * 179.72323 * 20 18 17 23 23 H 1.48496 * 109.47144 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47517 * 119.99491 * 22 20 18 25 25 H 1.48498 * 109.47345 * 239.99439 * 22 20 18 26 26 C 1.53153 * 86.89764 * 24.96517 * 7 6 4 27 27 C 1.53516 * 114.90776 * 91.39169 * 26 7 6 28 28 C 1.54973 * 103.89255 * 131.94812 * 27 26 7 29 29 C 1.55044 * 102.11750 * 20.86066 * 28 27 26 30 30 O 1.43060 * 115.22958 * 218.02082 * 26 7 6 31 31 H 1.09010 * 109.46658 * 59.99676 * 1 2 3 32 32 H 1.08994 * 109.47354 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47099 * 300.00192 * 1 2 3 34 34 H 1.09004 * 109.46885 * 240.00532 * 2 1 3 35 35 H 1.08996 * 109.46771 * 120.00202 * 2 1 3 36 36 H 1.08995 * 113.59746 * 105.86728 * 6 4 3 37 37 H 1.09001 * 113.66785 * 335.03273 * 6 4 3 38 38 H 0.97002 * 119.99575 * 337.66202 * 9 7 6 39 39 H 1.00899 * 111.00536 * 300.00080 * 14 12 10 40 40 H 1.00908 * 110.99422 * 63.95574 * 14 12 10 41 41 H 1.08992 * 109.47130 * 64.99585 * 15 12 10 42 42 H 1.09000 * 109.46853 * 304.99633 * 15 12 10 43 43 H 1.09002 * 109.46908 * 59.99611 * 16 15 12 44 44 H 1.09000 * 109.47060 * 299.99618 * 16 15 12 45 45 H 1.09002 * 109.47303 * 60.00199 * 17 16 15 46 46 H 1.09000 * 109.47162 * 299.99901 * 17 16 15 47 47 H 0.97002 * 119.99510 * 180.02562 * 21 20 18 48 48 H 1.09004 * 110.54477 * 250.55320 * 27 26 7 49 49 H 1.08999 * 110.54650 * 13.35122 * 27 26 7 50 50 H 1.09008 * 110.87388 * 139.01284 * 28 27 26 51 51 H 1.08997 * 110.87758 * 262.70366 * 28 27 26 52 52 H 1.08996 * 110.59827 * 81.88820 * 29 28 27 53 53 H 1.09009 * 110.58995 * 204.82106 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9270 0.5639 -0.3717 6 6 4.0084 1.9782 1.3296 7 6 4.9869 2.8182 0.4897 8 1 5.9170 2.3007 0.2548 9 7 5.2035 4.1683 1.0155 10 6 6.3210 4.8474 0.6891 11 8 7.1474 4.3406 -0.0395 12 6 6.5440 6.2359 1.2305 13 1 5.6031 6.7861 1.2186 14 7 7.5303 6.9344 0.3955 15 6 7.0641 6.1460 2.6667 16 6 7.1722 7.5526 3.2589 17 6 7.6916 7.4626 4.6952 18 6 7.7975 8.8479 5.2788 19 1 7.5261 9.7070 4.6832 20 6 8.2468 9.0192 6.5710 21 7 8.5776 7.9731 7.2962 22 14 8.3854 10.7369 7.2918 23 1 7.9559 11.7347 6.2793 24 1 7.5159 10.8422 8.4910 25 1 9.7950 10.9994 7.6780 26 6 3.9467 2.7557 -0.6326 27 6 2.9392 3.9140 -0.6457 28 6 2.9310 4.3834 -2.1226 29 6 3.4865 3.1393 -2.8626 30 8 4.4812 2.6180 -1.9525 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 4.4959 1.2057 1.9242 37 1 3.3052 2.5769 1.9086 38 1 4.5426 4.5734 1.5986 39 1 8.4120 6.4438 0.3902 40 1 7.1827 7.0637 -0.5430 41 1 8.0467 5.6745 2.6684 42 1 6.3747 5.5513 3.2661 43 1 6.1894 8.0240 3.2572 44 1 7.8615 8.1472 2.6595 45 1 8.6743 6.9910 4.6973 46 1 7.0020 6.8681 5.2944 47 1 8.8934 8.0935 8.2055 48 1 1.9502 3.5641 -0.3499 49 1 3.2730 4.7187 0.0094 50 1 1.9171 4.6106 -2.4522 51 1 3.5872 5.2426 -2.2608 52 1 2.6965 2.4068 -3.0277 53 1 3.9459 3.4289 -3.8077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578091294.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -146.927521 kcal Electronic energy + Delta-G solvation = -30691.110759 eV Core-core repulsion = 26561.777245 eV Total energy + Delta-G solvation = -4129.333514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20748 -40.63928 -38.72081 -37.41459 -36.92949 -35.22046 -34.21325 -33.10847 -33.02371 -31.74436 -29.58318 -28.49384 -27.16798 -25.37743 -24.25413 -23.92063 -23.49319 -22.84880 -21.73772 -21.17691 -20.24723 -18.47195 -18.38231 -18.19694 -17.73037 -17.21530 -17.05239 -16.68411 -16.58673 -16.45449 -16.28728 -15.72999 -15.39333 -15.12922 -14.60065 -14.51061 -14.48238 -14.26834 -14.14135 -13.62575 -13.54319 -13.27239 -13.15090 -13.07648 -12.92082 -12.84690 -12.57435 -12.49361 -12.37985 -12.32541 -12.21916 -12.15537 -12.10817 -11.75708 -11.57331 -11.49887 -11.36690 -11.20716 -11.06278 -10.92593 -10.51377 -10.43854 -9.99519 -9.68374 -8.16259 -6.26354 1.41645 1.42472 1.47244 1.55945 1.98650 2.44186 2.66863 2.93912 3.16842 3.30374 3.31907 3.50540 3.59099 3.64016 3.79876 3.85721 3.99739 4.03653 4.11255 4.17554 4.19155 4.24903 4.35248 4.39129 4.50648 4.54056 4.68671 4.70149 4.73360 4.75957 4.83018 4.87941 4.92662 4.94644 4.95906 5.04440 5.06100 5.15748 5.16392 5.28653 5.29189 5.36186 5.39863 5.62564 5.86235 5.89534 5.95472 6.04030 6.23641 6.31889 6.41476 6.49884 6.91801 7.13803 7.42604 8.95698 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.002121 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.235376 B =13196.157842 C =14088.611756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.377 6.377 4 C 0.063 3.937 5 H 0.097 0.903 6 C -0.147 4.147 7 C 0.128 3.872 8 H 0.096 0.904 9 N -0.699 5.699 10 C 0.487 3.513 11 O -0.578 6.578 12 C 0.088 3.912 13 H 0.124 0.876 14 N -0.817 5.817 15 C -0.094 4.094 16 C -0.084 4.084 17 C 0.021 3.979 18 C -0.537 4.537 19 H 0.060 0.940 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.281 1.281 26 C 0.070 3.930 27 C -0.124 4.124 28 C -0.149 4.149 29 C 0.041 3.959 30 O -0.385 6.385 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.417 0.583 39 H 0.345 0.655 40 H 0.348 0.652 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.055 0.945 45 H -0.017 1.017 46 H -0.007 1.007 47 H 0.262 0.738 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.068 0.932 52 H 0.069 0.931 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.378 -15.882 -19.521 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.296 6.296 4 C 0.003 3.997 5 H 0.115 0.885 6 C -0.185 4.185 7 C 0.021 3.979 8 H 0.114 0.886 9 N -0.352 5.352 10 C 0.273 3.727 11 O -0.457 6.457 12 C -0.027 4.027 13 H 0.141 0.859 14 N -0.346 5.346 15 C -0.132 4.132 16 C -0.121 4.121 17 C -0.016 4.016 18 C -0.575 4.575 19 H 0.078 0.922 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.789 3.211 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.207 1.207 26 C 0.028 3.972 27 C -0.162 4.162 28 C -0.186 4.186 29 C -0.035 4.035 30 O -0.304 6.304 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.255 0.745 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.001 0.999 46 H 0.012 0.988 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.101 0.899 50 H 0.117 0.883 51 H 0.086 0.914 52 H 0.087 0.913 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.733 -15.589 -19.425 31.165 hybrid contribution 0.332 -0.395 0.272 0.583 sum -18.402 -15.984 -19.152 30.999 Atomic orbital electron populations 1.21751 0.92761 1.03272 1.02778 1.22713 0.96343 0.83019 1.00706 1.87882 1.19423 1.27678 1.94578 1.23785 0.82071 0.98001 0.95799 0.88545 1.23655 0.97715 1.00132 0.97037 1.22242 0.97915 0.83936 0.93796 0.88584 1.45909 1.22466 1.16131 1.50647 1.22511 0.80840 0.89650 0.79693 1.90678 1.45469 1.70718 1.38826 1.21634 0.98704 0.88220 0.94188 0.85857 1.59060 1.06072 1.52501 1.16982 1.21462 1.00702 0.98560 0.92497 1.21280 1.00602 0.95137 0.95106 1.19060 0.94241 0.95303 0.92988 1.21766 1.43085 0.94260 0.98391 0.92197 1.26000 0.95156 1.01141 0.97880 1.70116 1.46086 1.31517 1.09897 0.85413 0.77719 0.79621 0.78386 1.18522 1.20262 1.20698 1.24163 0.93894 0.95570 0.83551 1.22491 0.99596 0.96221 0.97889 1.23119 1.02899 0.97994 0.94599 1.23737 0.91299 0.94719 0.93709 1.88829 1.41827 1.83572 1.16180 0.92264 0.89531 0.92071 0.93056 0.92472 0.88425 0.87005 0.74514 0.84161 0.83879 0.93671 0.90678 0.92472 0.92637 0.99857 0.98817 0.92925 0.88413 0.89852 0.88258 0.91359 0.91293 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 71.98 0.74 -0.57 16 2 C 0.05 0.54 6.51 71.98 0.47 1.01 16 3 O -0.38 -5.75 8.81 -148.98 -1.31 -7.06 16 4 C 0.06 1.00 4.08 30.95 0.13 1.13 16 5 H 0.10 1.52 7.90 -2.39 -0.02 1.50 16 6 C -0.15 -2.16 7.48 31.20 0.23 -1.93 16 7 C 0.13 2.61 4.01 45.34 0.18 2.80 16 8 H 0.10 2.51 7.53 -2.39 -0.02 2.49 16 9 N -0.70 -14.16 4.08 -440.87 -1.80 -15.96 16 10 C 0.49 12.96 7.07 87.66 0.62 13.58 16 11 O -0.58 -19.84 15.88 -3.02 -0.05 -19.89 16 12 C 0.09 2.28 3.15 44.17 0.14 2.42 16 13 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 14 N -0.82 -22.04 8.44 -171.80 -1.45 -23.48 16 15 C -0.09 -3.03 4.84 30.60 0.15 -2.88 16 16 C -0.08 -3.36 5.04 30.59 0.15 -3.21 16 17 C 0.02 1.12 4.97 29.85 0.15 1.27 16 18 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 19 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 20 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 21 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 22 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 C 0.07 1.34 1.48 -10.52 -0.02 1.32 16 27 C -0.12 -1.98 6.09 31.44 0.19 -1.78 16 28 C -0.15 -2.22 7.16 31.97 0.23 -1.99 16 29 C 0.04 0.71 7.73 72.68 0.56 1.27 16 30 O -0.38 -9.20 11.28 -148.98 -1.68 -10.88 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.42 6.28 8.06 -92.71 -0.75 5.53 16 39 H 0.34 10.05 8.58 -89.69 -0.77 9.28 16 40 H 0.35 8.12 9.06 -89.69 -0.81 7.31 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 2.32 7.75 -2.39 -0.02 2.30 16 45 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 48 H 0.10 1.48 6.70 -2.38 -0.02 1.46 16 49 H 0.08 1.25 6.20 -2.39 -0.01 1.24 16 50 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.10 1.46 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -74.02 423.30 -0.78 -74.80 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: -1.42 Total: 31.08 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.62 Total: -18.05 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -2.97 Total: -96.82 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -3.04 Total: -37.83 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.02 -0.78 -74.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578091294.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.129 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds