Wall clock time and date at job start Sat Apr 11 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.46786 * 2 1 4 4 C 1.42906 * 113.99825 * 176.71788 * 3 2 1 5 5 H 1.09000 * 109.46652 * 3.81286 * 4 3 2 6 6 C 1.50702 * 109.47068 * 123.81042 * 4 3 2 7 7 O 1.21280 * 120.00200 * 4.99427 * 6 4 3 8 8 N 1.34772 * 120.00028 * 185.00539 * 6 4 3 9 9 C 1.46501 * 120.00133 * 180.02562 * 8 6 4 10 10 C 1.53784 * 113.61269 * 254.13198 * 9 8 6 11 11 C 1.53949 * 87.01999 * 220.04884 * 10 9 8 12 12 C 1.53003 * 113.66807 * 139.93354 * 11 10 9 13 13 N 1.46501 * 109.47195 * 87.43961 * 12 11 10 14 14 C 1.36931 * 120.00129 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00305 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00031 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00311 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46886 * 60.00171 * 18 16 14 20 20 H 1.48502 * 109.47353 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47240 * 300.00364 * 18 16 14 22 22 C 1.53778 * 113.61639 * 156.52602 * 9 8 6 23 23 C 1.52996 * 109.47274 * 243.80787 * 4 3 2 24 24 C 1.53180 * 109.54396 * 65.32526 * 23 4 3 25 25 C 1.53086 * 109.16606 * 183.15186 * 24 23 4 26 26 O 1.42906 * 109.41429 * 57.61046 * 25 24 23 27 27 C 1.42902 * 114.09699 * 298.84272 * 26 25 24 28 28 C 1.53092 * 109.41682 * 61.15578 * 27 26 25 29 29 H 1.09004 * 109.46724 * 299.99847 * 1 2 3 30 30 H 1.08997 * 109.46871 * 59.99542 * 1 2 3 31 31 H 1.08998 * 109.46995 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46972 * 240.00833 * 2 1 3 33 33 H 1.08995 * 109.47348 * 120.00261 * 2 1 3 34 34 H 0.97003 * 120.00083 * 359.97438 * 8 6 4 35 35 H 1.08997 * 112.84868 * 25.32269 * 9 8 6 36 36 H 1.09004 * 113.61032 * 334.56847 * 10 9 8 37 37 H 1.08999 * 113.61496 * 105.46368 * 10 9 8 38 38 H 1.09011 * 113.61178 * 270.79943 * 11 10 9 39 39 H 1.09002 * 109.47134 * 207.43701 * 12 11 10 40 40 H 1.08992 * 109.47238 * 327.44059 * 12 11 10 41 41 H 0.97004 * 119.99917 * 0.02562 * 13 12 11 42 42 H 0.96997 * 120.00500 * 180.02562 * 17 16 14 43 43 H 1.08997 * 113.61213 * 254.52690 * 22 9 8 44 44 H 1.09002 * 113.61559 * 25.34713 * 22 9 8 45 45 H 1.08996 * 109.61603 * 185.54655 * 23 4 3 46 46 H 1.08998 * 109.51859 * 63.24296 * 24 23 4 47 47 H 1.09004 * 109.57247 * 303.09119 * 24 23 4 48 48 H 1.08997 * 109.48556 * 177.58878 * 25 24 23 49 49 H 1.08995 * 109.48264 * 297.62933 * 25 24 23 50 50 H 1.09005 * 109.48343 * 301.17822 * 27 26 25 51 51 H 1.08999 * 109.48027 * 181.14104 * 27 26 25 52 52 H 1.09004 * 109.52517 * 182.48405 * 28 27 26 53 53 H 1.09006 * 109.51882 * 62.29812 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4289 1.4609 0.0747 5 1 3.8745 0.4665 0.0494 6 6 3.9307 2.2663 -1.0960 7 8 3.1424 2.7765 -1.8635 8 7 5.2556 2.4194 -1.2903 9 6 5.7434 3.2027 -2.4281 10 6 6.3292 2.3440 -3.5613 11 6 7.4241 3.4172 -3.7001 12 6 8.8192 2.8423 -3.9532 13 7 9.0165 2.6551 -5.3928 14 6 10.1989 2.1481 -5.8617 15 1 10.9862 1.8865 -5.1702 16 6 10.3856 1.9702 -7.2256 17 7 9.4262 2.2894 -8.0683 18 14 11.9988 1.2792 -7.8653 19 1 12.2191 -0.0736 -7.2937 20 1 11.9454 1.1874 -9.3465 21 1 13.1142 2.1737 -7.4641 22 6 7.1598 3.7663 -2.2259 23 6 3.8169 2.1607 1.3788 24 6 3.4255 1.2797 2.5692 25 6 3.7452 2.0211 3.8698 26 8 3.0498 3.2694 3.8882 27 6 3.4102 4.1538 2.8251 28 6 3.0771 3.4980 1.4825 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8861 2.0114 -0.6763 35 1 5.0228 3.9452 -2.7708 36 1 6.7054 1.3772 -3.2267 37 1 5.6784 2.2675 -4.4323 38 1 7.1647 4.2188 -4.3919 39 1 9.5714 3.5319 -3.5701 40 1 8.9142 1.8824 -3.4457 41 1 8.3094 2.8904 -6.0138 42 1 9.5565 2.1648 -9.0214 43 1 7.1787 4.8366 -2.0205 44 1 7.7631 3.1900 -1.5245 45 1 4.8924 2.3369 1.3936 46 1 3.9893 0.3475 2.5333 47 1 2.3583 1.0618 2.5270 48 1 3.4293 1.4166 4.7200 49 1 4.8183 2.2020 3.9308 50 1 4.4790 4.3625 2.8724 51 1 2.8530 5.0855 2.9227 52 1 3.3916 4.1523 0.6694 53 1 2.0026 3.3259 1.4178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674566259.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:50 Heat of formation + Delta-G solvation = -134.918057 kcal Electronic energy + Delta-G solvation = -30469.091962 eV Core-core repulsion = 26340.279218 eV Total energy + Delta-G solvation = -4128.812745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63478 -40.44031 -39.48548 -38.43686 -36.33050 -35.36055 -34.37884 -32.79943 -32.15302 -31.95366 -29.35340 -28.11852 -26.64418 -25.43238 -24.71624 -24.48358 -23.67363 -22.76487 -21.63397 -20.99226 -20.62591 -19.06193 -18.34395 -18.00485 -17.37994 -17.14769 -16.84374 -16.57248 -16.44809 -16.14714 -15.86314 -15.65066 -15.43440 -15.28820 -15.13103 -14.86783 -14.71885 -14.55427 -14.03771 -13.39598 -13.36817 -13.23925 -13.22414 -13.10553 -13.01284 -12.90207 -12.79411 -12.69985 -12.27668 -12.24539 -12.21935 -12.11971 -11.99945 -11.86931 -11.69060 -11.39268 -11.30134 -11.23856 -11.08317 -10.87599 -10.61482 -10.16877 -10.02016 -8.98301 -7.94523 -5.23472 1.46772 1.50312 1.53293 1.56512 1.92929 2.56457 2.82699 3.00848 3.38174 3.50252 3.55599 3.57729 3.61685 3.76207 3.88622 3.91517 3.98307 4.02080 4.12288 4.16547 4.30645 4.32463 4.35355 4.45732 4.46303 4.56546 4.60072 4.65224 4.70648 4.73217 4.80278 4.81862 4.83219 4.89452 4.91845 4.96381 5.00310 5.00842 5.12708 5.14594 5.18374 5.23800 5.24947 5.40743 5.41999 5.49932 5.63636 6.09846 6.27643 6.31065 6.58093 7.24369 7.33242 8.11776 8.33306 9.29084 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.002014 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.133733 B =13901.558863 C =14682.656138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.376 6.376 4 C 0.082 3.918 5 H 0.117 0.883 6 C 0.500 3.500 7 O -0.574 6.574 8 N -0.701 5.701 9 C 0.130 3.870 10 C -0.141 4.141 11 C -0.115 4.115 12 C 0.165 3.835 13 N -0.748 5.748 14 C -0.245 4.245 15 H 0.078 0.922 16 C -0.081 4.081 17 N -0.972 5.972 18 Si 0.976 3.024 19 H -0.276 1.276 20 H -0.297 1.297 21 H -0.276 1.276 22 C -0.110 4.110 23 C -0.089 4.089 24 C -0.145 4.145 25 C 0.056 3.944 26 O -0.406 6.406 27 C 0.064 3.936 28 C -0.142 4.142 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.417 0.583 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.026 0.974 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.066 0.934 48 H 0.106 0.894 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.056 0.944 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 -3.615 29.168 32.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.294 6.294 4 C 0.020 3.980 5 H 0.134 0.866 6 C 0.287 3.713 7 O -0.453 6.453 8 N -0.354 5.354 9 C 0.025 3.975 10 C -0.180 4.180 11 C -0.134 4.134 12 C 0.039 3.961 13 N -0.390 5.390 14 C -0.377 4.377 15 H 0.096 0.904 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.804 3.196 19 H -0.202 1.202 20 H -0.224 1.224 21 H -0.202 1.202 22 C -0.149 4.149 23 C -0.107 4.107 24 C -0.183 4.183 25 C -0.020 4.020 26 O -0.325 6.325 27 C -0.013 4.013 28 C -0.180 4.180 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.255 0.745 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.129 0.871 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.085 0.915 48 H 0.124 0.876 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.111 0.889 52 H 0.075 0.925 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.279 -3.121 28.801 32.298 hybrid contribution 0.872 -0.535 -1.569 1.873 sum -13.406 -3.656 27.233 30.573 Atomic orbital electron populations 1.21740 0.93210 1.03319 1.02365 1.22855 0.96404 0.82702 1.00986 1.88034 1.19014 1.27920 1.94416 1.22089 0.83713 1.00067 0.92105 0.86552 1.21460 0.82626 0.80768 0.86451 1.90707 1.56588 1.49721 1.48253 1.45873 1.06480 1.53527 1.29496 1.22319 0.95150 0.93776 0.86239 1.23482 0.97373 0.98754 0.98369 1.22471 0.94374 0.98398 0.98174 1.20785 0.94277 0.96858 0.84207 1.42630 1.16177 1.77300 1.02934 1.19643 0.93666 1.33137 0.91253 0.90408 1.25630 1.01535 1.03633 0.96451 1.69826 1.34611 1.56088 1.01798 0.85176 0.79374 0.78518 0.76489 1.20224 1.22357 1.20217 1.23215 0.93735 1.02690 0.95234 1.21563 1.01324 0.95312 0.92541 1.22233 1.02979 0.99358 0.93715 1.22755 0.96919 0.84417 0.97937 1.87917 1.66718 1.28343 1.49516 1.22606 1.00577 0.92762 0.85344 1.22042 1.01335 0.96608 0.98001 0.91885 0.93508 0.88933 0.93651 0.90622 0.74536 0.88825 0.89391 0.93689 0.90365 0.95892 0.95578 0.79717 0.94083 0.89352 0.87120 0.87493 0.88154 0.91518 0.87624 0.91628 0.91711 0.88853 0.92489 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 71.98 0.74 -1.35 16 2 C 0.05 0.69 6.21 71.98 0.45 1.14 16 3 O -0.38 -7.86 8.08 -129.99 -1.05 -8.91 16 4 C 0.08 1.32 2.34 29.85 0.07 1.39 16 5 H 0.12 1.20 7.61 -2.39 -0.02 1.18 16 6 C 0.50 11.66 6.26 87.66 0.55 12.21 16 7 O -0.57 -19.84 16.13 15.96 0.26 -19.58 16 8 N -0.70 -12.86 5.26 -440.04 -2.31 -15.17 16 9 C 0.13 3.07 4.21 45.52 0.19 3.26 16 10 C -0.14 -4.12 7.45 31.18 0.23 -3.89 16 11 C -0.11 -3.49 3.75 -10.21 -0.04 -3.53 16 12 C 0.16 6.30 6.10 86.38 0.53 6.83 16 13 N -0.75 -38.37 5.60 -343.45 -1.92 -40.29 16 14 C -0.25 -13.76 9.99 84.03 0.84 -12.93 16 15 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 16 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 17 N -0.97 -60.67 13.06 21.65 0.28 -60.38 16 18 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C -0.11 -2.25 7.39 31.12 0.23 -2.02 16 23 C -0.09 -1.05 2.09 -10.68 -0.02 -1.08 16 24 C -0.15 -1.29 5.33 30.68 0.16 -1.13 16 25 C 0.06 0.54 6.84 72.01 0.49 1.03 16 26 O -0.41 -6.61 10.77 -148.98 -1.60 -8.21 16 27 C 0.06 0.90 6.84 72.01 0.49 1.40 16 28 C -0.14 -2.39 5.03 30.68 0.15 -2.24 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.71 7.82 -2.39 -0.02 0.69 16 34 H 0.42 4.50 8.42 -92.71 -0.78 3.72 16 35 H 0.09 2.63 7.50 -2.39 -0.02 2.61 16 36 H 0.09 2.48 7.90 -2.38 -0.02 2.46 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.03 0.97 7.85 -2.39 -0.02 0.95 16 41 H 0.37 20.60 7.67 -92.71 -0.71 19.89 16 42 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 45 H 0.11 0.81 7.77 -2.39 -0.02 0.79 16 46 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.07 0.81 7.33 -2.39 -0.02 0.79 16 48 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 51 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.06 1.13 7.52 -2.38 -0.02 1.11 16 53 H 0.06 1.31 7.45 -2.38 -0.02 1.30 16 Total: -1.00 -78.23 420.28 0.61 -77.61 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.60 Total: 31.76 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.54 Total: -5.12 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -3.95 Total: -115.85 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -2.40 Total: -36.70 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -78.23 0.61 -77.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674566259.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.305 kcal (2) G-P(sol) polarization free energy of solvation -78.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds