Wall clock time and date at job start Sat Apr 11 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47005 * 2 1 4 4 C 1.42896 * 114.00018 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47470 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47130 * 64.99652 * 5 4 3 7 7 C 1.42895 * 114.00347 * 180.02562 * 6 5 4 8 8 C 1.50692 * 109.47577 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99996 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00346 * 179.97438 * 8 7 6 11 11 C 1.46951 * 120.84516 * 359.72789 * 10 8 7 12 12 C 1.53605 * 108.77420 * 125.92969 * 11 10 8 13 13 C 1.53124 * 109.41111 * 54.30627 * 12 11 10 14 14 C 1.52857 * 109.34064 * 299.22082 * 13 12 11 15 15 H 1.09003 * 109.25437 * 302.48818 * 14 13 12 16 16 C 1.52772 * 110.20278 * 183.23390 * 14 13 12 17 17 N 1.46893 * 109.18608 * 292.67000 * 16 14 13 18 18 C 1.36942 * 120.77443 * 126.62764 * 17 16 14 19 19 H 1.07992 * 120.00078 * 207.50657 * 18 17 16 20 20 C 1.38810 * 119.99809 * 27.50042 * 18 17 16 21 21 N 1.31620 * 120.00064 * 17.32939 * 20 18 17 22 22 Si 1.86804 * 120.00162 * 197.32788 * 20 18 17 23 23 H 1.48497 * 109.46778 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47152 * 120.00256 * 22 20 18 25 25 H 1.48497 * 109.47007 * 240.00500 * 22 20 18 26 26 C 1.46974 * 118.45155 * 306.65372 * 17 16 14 27 27 C 1.53088 * 108.62596 * 54.30852 * 26 17 16 28 28 C 1.47307 * 120.85054 * 179.97438 * 10 8 7 29 29 H 1.09002 * 110.07133 * 355.09266 * 28 10 8 30 30 H 1.09003 * 109.46696 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47361 * 300.00384 * 1 2 3 32 32 H 1.09005 * 109.47019 * 60.00558 * 1 2 3 33 33 H 1.08993 * 109.47499 * 239.99917 * 2 1 3 34 34 H 1.09005 * 109.47019 * 119.99442 * 2 1 3 35 35 H 1.09001 * 109.46999 * 59.99783 * 4 3 2 36 36 H 1.09006 * 109.47350 * 300.00295 * 4 3 2 37 37 H 1.09002 * 109.46407 * 305.00262 * 5 4 3 38 38 H 1.08994 * 109.47287 * 185.00289 * 5 4 3 39 39 H 1.09006 * 109.46811 * 300.00703 * 7 6 5 40 40 H 1.08999 * 109.46666 * 59.99817 * 7 6 5 41 41 H 1.09003 * 109.54408 * 245.84018 * 11 10 8 42 42 H 1.09001 * 109.54413 * 6.11181 * 11 10 8 43 43 H 1.09005 * 109.61924 * 294.25706 * 12 11 10 44 44 H 1.08998 * 109.39834 * 174.22042 * 12 11 10 45 45 H 1.08993 * 109.49603 * 179.25519 * 13 12 11 46 46 H 1.08997 * 109.50814 * 59.18807 * 13 12 11 47 47 H 1.08999 * 109.51666 * 52.57934 * 16 14 13 48 48 H 1.08994 * 109.52097 * 172.75459 * 16 14 13 49 49 H 0.97003 * 120.00067 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.61074 * 174.05864 * 26 17 16 51 51 H 1.09006 * 109.60570 * 294.56481 * 26 17 16 52 52 H 1.08997 * 109.45113 * 184.62564 * 27 26 17 53 53 H 1.08998 * 109.44864 * 64.70014 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9385 0.0012 6 8 3.3975 3.5452 1.2222 7 6 3.7182 4.9339 1.3248 8 6 3.2240 5.4675 2.6446 9 8 2.6536 4.7309 3.4212 10 7 3.4166 6.7629 2.9625 11 6 4.1115 7.6701 2.0386 12 6 3.2177 8.8924 1.7802 13 6 2.8251 9.5275 3.1171 14 6 2.0458 8.5108 3.9511 15 1 1.1715 8.1805 3.3902 16 6 1.5749 9.1495 5.2565 17 7 2.7423 9.4477 6.0967 18 6 2.9416 10.7063 6.5982 19 1 3.9425 11.0491 6.8148 20 6 1.8570 11.5416 6.8278 21 7 0.6424 11.0393 6.8964 22 14 2.1212 13.3787 7.0395 23 1 3.5687 13.6877 6.9192 24 1 1.3701 14.1112 5.9886 25 1 1.6348 13.7977 8.3786 26 6 3.6919 8.3639 6.3862 27 6 4.1578 7.7552 5.0611 28 6 2.9407 7.3043 4.2471 29 1 2.3765 6.5441 4.7874 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8339 0.9765 -0.8892 36 1 3.8333 0.9767 0.8908 37 1 3.3498 3.4417 -0.8407 38 1 4.9082 3.0256 -0.0880 39 1 4.7989 5.0628 1.2629 40 1 3.2402 5.4782 0.5104 41 1 5.0538 7.9911 2.4826 42 1 4.3068 7.1540 1.0986 43 1 2.3187 8.5823 1.2474 44 1 3.7636 9.6194 1.1790 45 1 2.2017 10.4028 2.9348 46 1 3.7241 9.8270 3.6557 47 1 1.0385 10.0727 5.0375 48 1 0.9147 8.4596 5.7821 49 1 -0.1155 11.6230 7.0572 50 1 4.5497 8.7637 6.9269 51 1 3.2013 7.5987 6.9879 52 1 4.7990 6.8968 5.2615 53 1 4.7166 8.5009 4.4957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690316340.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:07 Heat of formation + Delta-G solvation = -104.785608 kcal Electronic energy + Delta-G solvation = -31140.442491 eV Core-core repulsion = 27012.936387 eV Total energy + Delta-G solvation = -4127.506104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.35905 -38.80792 -38.08535 -37.03143 -35.51252 -32.68231 -32.53359 -32.10506 -30.39755 -29.88169 -29.36981 -27.44939 -25.57202 -24.54931 -23.04068 -22.85702 -22.41609 -21.98641 -21.32646 -19.24357 -17.84157 -17.55733 -17.21433 -16.94016 -16.49203 -16.07031 -15.95706 -15.47841 -15.06134 -14.82860 -14.65850 -14.31766 -13.91597 -13.73303 -13.55084 -13.42525 -13.08070 -13.00337 -12.79309 -12.54081 -12.42907 -12.33358 -12.20694 -12.12003 -11.72874 -11.52995 -11.52366 -11.22836 -11.10852 -10.94953 -10.74361 -10.60574 -10.45061 -10.07448 -10.05177 -9.96905 -9.92359 -9.85978 -9.65530 -9.53392 -9.30624 -8.49153 -8.22917 -6.66518 -5.78068 -3.19695 2.77355 2.79172 3.36692 3.38267 3.45019 3.46683 3.72614 4.49735 4.53085 4.69979 4.78119 4.82749 4.85845 4.93377 4.98351 5.03017 5.07898 5.10398 5.12113 5.16453 5.22202 5.37044 5.39024 5.47328 5.48960 5.51010 5.53660 5.66194 5.67553 5.77804 5.89194 5.91007 6.07989 6.10557 6.22953 6.34344 6.43478 6.48951 6.56702 6.70410 6.77958 6.79830 6.94182 6.97003 7.02803 7.05223 7.34064 7.61023 7.69351 7.80560 8.38817 8.45083 9.21608 9.85135 10.42680 11.30567 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.002240 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.828497 B =12497.202358 C =12854.093080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.066 3.934 5 C 0.062 3.938 6 O -0.354 6.354 7 C 0.046 3.954 8 C 0.513 3.487 9 O -0.523 6.523 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.115 4.115 15 H 0.056 0.944 16 C 0.177 3.823 17 N -0.589 5.589 18 C -0.248 4.248 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.147 3.853 27 C -0.140 4.140 28 C 0.157 3.843 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.020 0.980 49 H 0.253 0.747 50 H 0.057 0.943 51 H 0.020 0.980 52 H 0.050 0.950 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -15.534 -18.296 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.015 4.015 6 O -0.272 6.272 7 C -0.034 4.034 8 C 0.299 3.701 9 O -0.398 6.398 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.141 4.141 14 C -0.136 4.136 15 H 0.075 0.925 16 C 0.050 3.950 17 N -0.311 5.311 18 C -0.378 4.378 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.020 3.980 27 C -0.180 4.180 28 C 0.055 3.945 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.110 0.890 48 H 0.038 0.962 49 H 0.063 0.937 50 H 0.075 0.925 51 H 0.038 0.962 52 H 0.069 0.931 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.068 -15.800 -17.688 24.748 hybrid contribution 0.422 0.912 -0.266 1.039 sum 7.490 -14.888 -17.954 24.497 Atomic orbital electron populations 1.21741 0.93660 1.02121 1.03425 1.22456 0.95845 0.83829 0.99804 1.87999 1.20320 1.26220 1.95346 1.22476 0.82475 0.95338 1.00821 1.22577 0.98277 0.92924 0.87745 1.88100 1.80705 1.20918 1.37465 1.22267 1.00121 0.84207 0.96807 1.20100 0.80104 0.82004 0.87857 1.90722 1.41345 1.56590 1.51140 1.48500 1.57673 1.08094 1.19812 1.21809 0.95846 0.91429 0.92526 1.22054 0.99497 0.96584 0.99183 1.21432 1.01478 0.97680 0.93519 1.22016 0.96870 0.94607 1.00144 0.92539 1.20726 0.88789 0.99435 0.86008 1.44052 1.25129 1.06133 1.55821 1.19180 0.92090 0.89005 1.37491 0.91646 1.25025 0.95845 0.98668 1.00120 1.70041 0.98267 1.33584 1.52721 0.86267 0.77574 0.85885 0.77321 1.20305 1.21628 1.21809 1.20865 0.93686 0.90986 0.92510 1.22397 0.96862 0.99676 0.99043 1.21367 0.95465 0.95544 0.82094 0.88734 0.91191 0.91494 0.91937 0.93694 0.93334 0.91842 0.92271 0.92288 0.91667 0.90672 0.90499 0.91074 0.90902 0.92076 0.91304 0.92021 0.90494 0.88953 0.96223 0.93680 0.92485 0.96197 0.93122 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.38 -4.47 10.31 -40.08 -0.41 -4.89 16 4 C 0.07 0.59 6.32 37.16 0.23 0.83 16 5 C 0.06 0.57 6.32 37.16 0.23 0.80 16 6 O -0.35 -4.90 9.84 -59.73 -0.59 -5.49 16 7 C 0.05 0.54 4.77 36.00 0.17 0.71 16 8 C 0.51 8.36 7.78 -10.99 -0.09 8.27 16 9 O -0.52 -11.00 15.95 -14.36 -0.23 -11.23 16 10 N -0.61 -9.21 2.66 -164.60 -0.44 -9.65 16 11 C 0.11 1.24 5.88 -3.48 -0.02 1.22 16 12 C -0.13 -1.68 6.10 -26.35 -0.16 -1.85 16 13 C -0.10 -1.73 4.86 -26.74 -0.13 -1.86 16 14 C -0.12 -2.18 2.45 -90.76 -0.22 -2.41 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.18 4.16 4.70 -3.94 -0.02 4.14 16 17 N -0.59 -14.28 2.64 -172.63 -0.46 -14.73 16 18 C -0.25 -6.59 9.60 -15.06 -0.14 -6.73 16 19 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.89 11.18 55.49 0.62 -25.27 16 22 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.15 3.06 6.51 -3.74 -0.02 3.04 16 27 C -0.14 -2.46 5.01 -26.58 -0.13 -2.59 16 28 C 0.16 2.84 2.66 -67.33 -0.18 2.66 16 29 H 0.09 1.97 7.06 -51.93 -0.37 1.60 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 40 H 0.08 0.75 7.72 -51.93 -0.40 0.35 16 41 H 0.07 0.79 7.23 -51.93 -0.38 0.42 16 42 H 0.07 0.62 5.96 -51.93 -0.31 0.31 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.08 1.40 6.15 -51.93 -0.32 1.08 16 47 H 0.09 2.41 6.03 -51.93 -0.31 2.10 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 50 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 53 H 0.07 1.12 5.31 -51.93 -0.28 0.84 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -33.62 406.11 -9.84 -43.47 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -9.50 Total: -0.73 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 0.07 Total: 6.09 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.27 Total: -49.65 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.23 Total: -21.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.62 -9.84 -43.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690316340.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.319 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds