Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47005 * 2 1 4 4 C 1.42896 * 114.00018 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47470 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47130 * 64.99652 * 5 4 3 7 7 C 1.42895 * 114.00347 * 180.02562 * 6 5 4 8 8 C 1.50692 * 109.47577 * 180.02562 * 7 6 5 9 9 O 1.21285 * 119.99996 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00346 * 179.97438 * 8 7 6 11 11 C 1.46951 * 120.84516 * 359.72789 * 10 8 7 12 12 C 1.53605 * 108.77420 * 125.92969 * 11 10 8 13 13 C 1.53124 * 109.41111 * 54.30627 * 12 11 10 14 14 C 1.52857 * 109.34064 * 299.22082 * 13 12 11 15 15 H 1.09003 * 109.25437 * 302.48818 * 14 13 12 16 16 C 1.52772 * 110.20278 * 183.23390 * 14 13 12 17 17 N 1.46893 * 109.18608 * 292.67000 * 16 14 13 18 18 C 1.36942 * 120.77443 * 126.62764 * 17 16 14 19 19 H 1.07992 * 120.00078 * 207.50657 * 18 17 16 20 20 C 1.38810 * 119.99809 * 27.50042 * 18 17 16 21 21 N 1.31620 * 120.00064 * 17.32939 * 20 18 17 22 22 Si 1.86804 * 120.00162 * 197.32788 * 20 18 17 23 23 H 1.48497 * 109.46778 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47152 * 120.00256 * 22 20 18 25 25 H 1.48497 * 109.47007 * 240.00500 * 22 20 18 26 26 C 1.46974 * 118.45155 * 306.65372 * 17 16 14 27 27 C 1.53088 * 108.62596 * 54.30852 * 26 17 16 28 28 C 1.47307 * 120.85054 * 179.97438 * 10 8 7 29 29 H 1.09002 * 110.07133 * 355.09266 * 28 10 8 30 30 H 1.09003 * 109.46696 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47361 * 300.00384 * 1 2 3 32 32 H 1.09005 * 109.47019 * 60.00558 * 1 2 3 33 33 H 1.08993 * 109.47499 * 239.99917 * 2 1 3 34 34 H 1.09005 * 109.47019 * 119.99442 * 2 1 3 35 35 H 1.09001 * 109.46999 * 59.99783 * 4 3 2 36 36 H 1.09006 * 109.47350 * 300.00295 * 4 3 2 37 37 H 1.09002 * 109.46407 * 305.00262 * 5 4 3 38 38 H 1.08994 * 109.47287 * 185.00289 * 5 4 3 39 39 H 1.09006 * 109.46811 * 300.00703 * 7 6 5 40 40 H 1.08999 * 109.46666 * 59.99817 * 7 6 5 41 41 H 1.09003 * 109.54408 * 245.84018 * 11 10 8 42 42 H 1.09001 * 109.54413 * 6.11181 * 11 10 8 43 43 H 1.09005 * 109.61924 * 294.25706 * 12 11 10 44 44 H 1.08998 * 109.39834 * 174.22042 * 12 11 10 45 45 H 1.08993 * 109.49603 * 179.25519 * 13 12 11 46 46 H 1.08997 * 109.50814 * 59.18807 * 13 12 11 47 47 H 1.08999 * 109.51666 * 52.57934 * 16 14 13 48 48 H 1.08994 * 109.52097 * 172.75459 * 16 14 13 49 49 H 0.97003 * 120.00067 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.61074 * 174.05864 * 26 17 16 51 51 H 1.09006 * 109.60570 * 294.56481 * 26 17 16 52 52 H 1.08997 * 109.45113 * 184.62564 * 27 26 17 53 53 H 1.08998 * 109.44864 * 64.70014 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9385 0.0012 6 8 3.3975 3.5452 1.2222 7 6 3.7182 4.9339 1.3248 8 6 3.2240 5.4675 2.6446 9 8 2.6536 4.7309 3.4212 10 7 3.4166 6.7629 2.9625 11 6 4.1115 7.6701 2.0386 12 6 3.2177 8.8924 1.7802 13 6 2.8251 9.5275 3.1171 14 6 2.0458 8.5108 3.9511 15 1 1.1715 8.1805 3.3902 16 6 1.5749 9.1495 5.2565 17 7 2.7423 9.4477 6.0967 18 6 2.9416 10.7063 6.5982 19 1 3.9425 11.0491 6.8148 20 6 1.8570 11.5416 6.8278 21 7 0.6424 11.0393 6.8964 22 14 2.1212 13.3787 7.0395 23 1 3.5687 13.6877 6.9192 24 1 1.3701 14.1112 5.9886 25 1 1.6348 13.7977 8.3786 26 6 3.6919 8.3639 6.3862 27 6 4.1578 7.7552 5.0611 28 6 2.9407 7.3043 4.2471 29 1 2.3765 6.5441 4.7874 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8339 0.9765 -0.8892 36 1 3.8333 0.9767 0.8908 37 1 3.3498 3.4417 -0.8407 38 1 4.9082 3.0256 -0.0880 39 1 4.7989 5.0628 1.2629 40 1 3.2402 5.4782 0.5104 41 1 5.0538 7.9911 2.4826 42 1 4.3068 7.1540 1.0986 43 1 2.3187 8.5823 1.2474 44 1 3.7636 9.6194 1.1790 45 1 2.2017 10.4028 2.9348 46 1 3.7241 9.8270 3.6557 47 1 1.0385 10.0727 5.0375 48 1 0.9147 8.4596 5.7821 49 1 -0.1155 11.6230 7.0572 50 1 4.5497 8.7637 6.9269 51 1 3.2013 7.5987 6.9879 52 1 4.7990 6.8968 5.2615 53 1 4.7166 8.5009 4.4957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690316340.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -125.923490 kcal Electronic energy + Delta-G solvation = -31141.359098 eV Core-core repulsion = 27012.936387 eV Total energy + Delta-G solvation = -4128.422711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.66340 -39.84241 -39.14110 -38.01174 -37.06811 -34.39951 -33.95115 -32.80711 -31.98009 -31.22948 -30.43937 -28.53306 -27.19878 -26.04443 -23.98367 -23.68836 -23.53566 -23.46973 -22.82106 -20.60557 -19.42123 -18.55839 -18.45158 -17.93517 -17.58919 -17.11774 -16.97756 -16.86136 -16.39393 -16.07008 -15.79716 -15.65091 -15.25600 -15.12941 -14.99747 -14.54448 -14.40068 -14.17794 -14.01333 -13.78379 -13.59228 -13.50058 -13.32543 -13.19152 -12.94822 -12.91145 -12.60319 -12.50359 -12.38683 -12.19334 -12.17678 -11.97717 -11.88221 -11.83033 -11.76232 -11.44559 -11.32366 -11.07417 -10.69238 -10.66667 -10.53566 -10.53057 -9.55872 -8.69364 -7.85796 -5.31033 1.47303 1.49347 1.58309 1.59871 1.72008 2.52382 2.77233 2.85865 3.30082 3.52781 3.64109 3.82594 3.95309 3.99305 4.06634 4.11097 4.14929 4.18461 4.23952 4.24258 4.31609 4.34803 4.39159 4.46951 4.48848 4.52078 4.55032 4.59569 4.64710 4.73363 4.75707 4.87736 4.89252 4.95689 4.99310 5.01767 5.04659 5.12394 5.16397 5.23123 5.24544 5.31848 5.45088 5.59022 5.60765 5.68741 5.70848 6.09788 6.32644 6.39122 6.50144 7.14460 7.18526 7.84648 8.39173 9.21550 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.002240 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.828497 B =12497.202358 C =12854.093080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.057 3.943 5 C 0.056 3.944 6 O -0.398 6.398 7 C 0.053 3.947 8 C 0.503 3.497 9 O -0.585 6.585 10 N -0.602 5.602 11 C 0.101 3.899 12 C -0.126 4.126 13 C -0.098 4.098 14 C -0.104 4.104 15 H 0.049 0.951 16 C 0.187 3.813 17 N -0.601 5.601 18 C -0.251 4.251 19 H 0.073 0.927 20 C -0.053 4.053 21 N -0.940 5.940 22 Si 0.967 3.033 23 H -0.262 1.262 24 H -0.291 1.291 25 H -0.298 1.298 26 C 0.141 3.859 27 C -0.121 4.121 28 C 0.163 3.837 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.062 0.938 48 H -0.021 1.021 49 H 0.248 0.752 50 H 0.066 0.934 51 H 0.002 0.998 52 H 0.066 0.934 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.064 -15.521 -21.798 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.335 6.335 4 C -0.019 4.019 5 C -0.019 4.019 6 O -0.317 6.317 7 C -0.026 4.026 8 C 0.293 3.707 9 O -0.465 6.465 10 N -0.335 5.335 11 C -0.020 4.020 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.125 4.125 15 H 0.068 0.932 16 C 0.060 3.940 17 N -0.324 5.324 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.586 5.586 22 Si 0.795 3.205 23 H -0.186 1.186 24 H -0.218 1.218 25 H -0.225 1.225 26 C 0.015 3.985 27 C -0.161 4.161 28 C 0.059 3.941 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.081 0.919 48 H -0.003 1.003 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.020 0.980 52 H 0.085 0.915 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.438 -15.784 -21.234 28.442 hybrid contribution -0.633 0.832 0.875 1.363 sum 9.805 -14.952 -20.359 27.096 Atomic orbital electron populations 1.21777 0.93688 1.03256 1.02245 1.22623 0.95971 0.83057 1.00867 1.87955 1.22094 1.27861 1.95587 1.22729 0.81314 0.95927 1.01918 1.22878 1.00344 0.92488 0.86240 1.88058 1.81766 1.21943 1.39931 1.22342 1.02436 0.83781 0.94015 1.21106 0.78914 0.81604 0.89116 1.90698 1.44144 1.58199 1.53426 1.48481 1.57342 1.08657 1.19028 1.22196 0.95413 0.90615 0.93742 1.22010 1.00368 0.97533 0.96490 1.21347 1.00061 0.96551 0.95594 1.21780 0.97399 0.95614 0.97726 0.93249 1.20455 0.88283 0.97276 0.87955 1.44250 1.25506 1.06521 1.56095 1.19531 0.92303 0.89870 1.36397 0.90954 1.25811 0.95597 1.02784 1.00636 1.70219 0.99050 1.34807 1.54537 0.85214 0.78107 0.80680 0.76498 1.18576 1.21765 1.22503 1.21006 0.93057 0.89847 0.94562 1.22177 0.96627 1.00320 0.96968 1.20940 0.95223 0.93935 0.83961 0.92571 0.88944 0.93692 0.92019 0.91306 0.93461 0.88550 0.93210 0.91299 0.88276 0.86557 0.87648 0.89577 0.86271 0.91858 0.87907 0.93575 0.91533 0.91946 1.00281 0.94266 0.91561 0.97966 0.91496 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 0.84 6.66 71.98 0.48 1.32 16 3 O -0.41 -9.46 10.31 -144.35 -1.49 -10.94 16 4 C 0.06 0.92 6.32 71.98 0.45 1.37 16 5 C 0.06 0.85 6.32 71.98 0.45 1.31 16 6 O -0.40 -10.19 9.84 -125.56 -1.24 -11.43 16 7 C 0.05 1.05 4.77 71.23 0.34 1.39 16 8 C 0.50 15.68 7.78 87.66 0.68 16.36 16 9 O -0.59 -25.33 15.95 15.99 0.26 -25.07 16 10 N -0.60 -17.05 2.66 -793.05 -2.11 -19.16 16 11 C 0.10 1.85 5.88 86.50 0.51 2.36 16 12 C -0.13 -2.65 6.10 30.84 0.19 -2.46 16 13 C -0.10 -3.16 4.86 30.59 0.15 -3.01 16 14 C -0.10 -4.07 2.45 -10.88 -0.03 -4.10 16 15 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 16 C 0.19 9.36 4.70 86.23 0.41 9.77 16 17 N -0.60 -30.13 2.64 -700.07 -1.85 -31.98 16 18 C -0.25 -13.53 9.60 84.03 0.81 -12.72 16 19 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 20 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 21 N -0.94 -56.51 11.18 21.65 0.24 -56.26 16 22 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 C 0.14 6.02 6.51 86.32 0.56 6.58 16 27 C -0.12 -4.16 5.01 30.69 0.15 -4.01 16 28 C 0.16 5.96 2.66 44.94 0.12 6.07 16 29 H 0.06 2.50 7.06 -2.39 -0.02 2.48 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.12 1.35 7.93 -2.38 -0.02 1.33 16 40 H 0.11 1.49 7.72 -2.39 -0.02 1.47 16 41 H 0.09 1.41 7.23 -2.39 -0.02 1.39 16 42 H 0.12 1.17 5.96 -2.39 -0.01 1.16 16 43 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.29 6.15 -2.39 -0.01 2.28 16 47 H 0.06 3.49 6.03 -2.39 -0.01 3.47 16 48 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 49 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 50 H 0.07 2.66 7.94 -2.39 -0.02 2.65 16 51 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 52 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 53 H 0.08 2.59 5.31 -2.39 -0.01 2.58 16 Total: -1.00 -80.60 406.11 3.15 -77.44 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.87 Total: 14.82 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 6.44 Total: 16.01 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.71 Total: -107.40 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -2.47 Total: -47.44 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.60 3.15 -77.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690316340.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.481 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds