Wall clock time and date at job start Sat Apr 11 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47215 * 2 1 4 4 C 1.42902 * 113.99634 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.52318 * 29.87490 * 4 3 2 6 6 C 1.53094 * 109.52214 * 269.68139 * 4 3 2 7 7 O 1.42909 * 109.41126 * 297.70530 * 6 4 3 8 8 C 1.42901 * 114.09992 * 298.83856 * 7 6 4 9 9 C 1.53109 * 109.48349 * 61.11845 * 8 7 6 10 10 C 1.53179 * 109.15568 * 302.51945 * 9 8 7 11 11 H 1.09001 * 109.54558 * 296.93945 * 10 9 8 12 12 C 1.52994 * 109.54376 * 176.76083 * 10 9 8 13 13 C 1.50696 * 109.47059 * 65.18134 * 12 10 9 14 14 O 1.21280 * 120.00124 * 359.97438 * 13 12 10 15 15 N 1.34783 * 120.00188 * 180.02562 * 13 12 10 16 16 C 1.46503 * 119.99973 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46758 * 179.97438 * 16 15 13 18 18 H 1.09003 * 112.84868 * 316.19372 * 17 16 15 19 19 C 1.53780 * 113.61485 * 87.50468 * 17 16 15 20 20 C 1.53778 * 87.08092 * 139.97987 * 19 17 16 21 21 H 1.08998 * 113.68905 * 220.01231 * 20 19 17 22 22 N 1.46499 * 113.61557 * 89.11527 * 20 19 17 23 23 C 1.36939 * 119.99933 * 107.77738 * 22 20 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 20 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 20 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 C 1.53783 * 113.61069 * 185.00291 * 17 16 15 32 32 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47227 * 300.00538 * 1 2 3 34 34 H 1.09000 * 109.47153 * 60.00223 * 1 2 3 35 35 H 1.09002 * 109.47227 * 239.99461 * 2 1 3 36 36 H 1.09000 * 109.47153 * 119.99777 * 2 1 3 37 37 H 1.08995 * 109.47605 * 57.68783 * 6 4 3 38 38 H 1.08996 * 109.47905 * 177.72340 * 6 4 3 39 39 H 1.08994 * 109.47747 * 181.14036 * 8 7 6 40 40 H 1.08994 * 109.48091 * 301.16693 * 8 7 6 41 41 H 1.09005 * 109.59526 * 182.57799 * 9 8 7 42 42 H 1.08997 * 109.45789 * 62.38515 * 9 8 7 43 43 H 1.09003 * 109.47346 * 305.17930 * 12 10 9 44 44 H 1.09004 * 109.47481 * 185.17783 * 12 10 9 45 45 H 0.96995 * 119.99654 * 359.97438 * 15 13 12 46 46 H 1.09003 * 109.47210 * 59.99561 * 16 15 13 47 47 H 1.08991 * 109.46962 * 299.99561 * 16 15 13 48 48 H 1.08998 * 113.61038 * 25.43021 * 19 17 16 49 49 H 1.08998 * 113.61309 * 254.52603 * 19 17 16 50 50 H 0.97001 * 119.99790 * 287.49711 * 22 20 19 51 51 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 52 52 H 1.09000 * 113.61551 * 105.47086 * 31 17 16 53 53 H 1.09004 * 113.69000 * 334.57222 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8641 0.6008 -0.5126 6 6 3.9409 1.5082 1.4421 7 8 3.4161 2.6672 2.0929 8 6 3.8069 3.9023 1.4896 9 6 3.2932 3.9516 0.0481 10 6 3.8422 2.7470 -0.7225 11 1 4.9295 2.8079 -0.7681 12 6 3.2698 2.7431 -2.1414 13 6 3.7722 3.9513 -2.8890 14 8 4.5146 4.7382 -2.3407 15 7 3.3958 4.1579 -4.1666 16 6 3.8838 5.3328 -4.8931 17 6 3.3116 5.3288 -6.3121 18 1 3.3508 4.3459 -6.7815 19 6 1.9390 6.0132 -6.4247 20 6 2.4328 6.6088 -7.7536 21 1 2.1317 7.6450 -7.9079 22 7 2.1608 5.7584 -8.9151 23 6 1.1930 6.1174 -9.8150 24 1 0.6274 7.0254 -9.6661 25 6 0.9392 5.3146 -10.9185 26 7 1.6284 4.2079 -11.0997 27 14 -0.3813 5.8041 -12.1457 28 1 -0.0455 7.1258 -12.7334 29 1 -0.4559 4.7866 -13.2248 30 1 -1.6928 5.8886 -11.4542 31 6 3.8598 6.4581 -7.2005 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.6143 0.6140 1.9730 38 1 5.0299 1.5534 1.4413 39 1 3.3839 4.7327 2.0548 40 1 4.8942 3.9789 1.4897 41 1 3.6291 4.8726 -0.4284 42 1 2.2038 3.9175 0.0496 43 1 2.1812 2.7718 -2.0942 44 1 3.5874 1.8378 -2.6589 45 1 2.8019 3.5287 -4.6049 46 1 4.9724 5.3044 -4.9406 47 1 3.5662 6.2378 -4.3754 48 1 1.7589 6.7601 -5.6516 49 1 1.1108 5.3141 -6.5406 50 1 2.6689 4.9430 -9.0487 51 1 1.4507 3.6468 -11.8707 52 1 4.5822 6.1182 -7.9426 53 1 4.2052 7.3273 -6.6406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691156452.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:26 Heat of formation + Delta-G solvation = -133.424893 kcal Electronic energy + Delta-G solvation = -30040.508802 eV Core-core repulsion = 25911.760805 eV Total energy + Delta-G solvation = -4128.747996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37143 -40.48550 -39.72605 -38.09070 -36.06471 -35.23278 -34.90939 -32.31202 -32.13180 -31.01131 -30.08942 -28.23093 -26.43817 -25.74943 -24.72668 -24.33580 -23.58071 -22.95278 -21.47713 -20.88211 -19.80706 -19.32669 -18.06715 -17.64474 -17.43393 -17.07467 -16.85711 -16.67557 -16.56448 -16.20953 -15.92060 -15.78220 -15.48940 -15.13050 -14.92293 -14.78630 -14.63306 -14.09663 -13.93660 -13.72452 -13.58676 -13.31240 -13.19326 -13.04719 -12.92973 -12.91557 -12.70114 -12.59247 -12.35721 -12.20358 -12.11765 -12.07020 -11.97841 -11.67320 -11.52211 -11.47248 -11.25956 -10.97108 -10.91025 -10.86242 -10.64341 -10.04156 -9.96123 -9.00124 -7.95552 -5.23757 1.48022 1.50357 1.56449 1.69051 2.26307 2.55746 2.67512 3.06016 3.36848 3.59581 3.70543 3.72329 3.80138 3.80448 3.87700 3.92633 4.14033 4.18949 4.23062 4.28665 4.32851 4.36629 4.41645 4.43706 4.47244 4.53560 4.55930 4.57985 4.73583 4.74724 4.77798 4.83361 4.88277 4.92504 4.96603 4.99663 5.06122 5.08970 5.11605 5.18442 5.29412 5.31966 5.34596 5.39661 5.50709 5.58530 5.66507 6.17636 6.28147 6.44529 6.59710 7.29058 7.33194 8.10272 8.32792 9.27459 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015519 B = 0.001932 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.807491 B =14491.411117 C =15723.845708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.387 6.387 4 C 0.061 3.939 5 H 0.092 0.908 6 C 0.036 3.964 7 O -0.395 6.395 8 C 0.062 3.938 9 C -0.145 4.145 10 C -0.066 4.066 11 H 0.087 0.913 12 C -0.125 4.125 13 C 0.509 3.491 14 O -0.577 6.577 15 N -0.722 5.722 16 C 0.141 3.859 17 C -0.101 4.101 18 H 0.082 0.918 19 C -0.153 4.153 20 C 0.143 3.857 21 H 0.058 0.942 22 N -0.719 5.719 23 C -0.244 4.244 24 H 0.076 0.924 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.973 3.027 28 H -0.279 1.279 29 H -0.296 1.296 30 H -0.278 1.278 31 C -0.135 4.135 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.410 0.590 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.089 0.911 49 H 0.047 0.953 50 H 0.374 0.626 51 H 0.251 0.749 52 H 0.057 0.943 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.690 -8.556 26.591 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.307 6.307 4 C 0.003 3.997 5 H 0.110 0.890 6 C -0.041 4.041 7 O -0.314 6.314 8 C -0.014 4.014 9 C -0.182 4.182 10 C -0.085 4.085 11 H 0.105 0.895 12 C -0.165 4.165 13 C 0.298 3.702 14 O -0.458 6.458 15 N -0.373 5.373 16 C 0.017 3.983 17 C -0.120 4.120 18 H 0.100 0.900 19 C -0.193 4.193 20 C 0.033 3.967 21 H 0.076 0.924 22 N -0.358 5.358 23 C -0.376 4.376 24 H 0.093 0.907 25 C -0.267 4.267 26 N -0.619 5.619 27 Si 0.802 3.198 28 H -0.205 1.205 29 H -0.222 1.222 30 H -0.204 1.204 31 C -0.175 4.175 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.131 0.869 45 H 0.246 0.754 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.108 0.892 49 H 0.066 0.934 50 H 0.207 0.793 51 H 0.060 0.940 52 H 0.076 0.924 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.826 -7.738 27.018 28.515 hybrid contribution -0.510 -0.565 -1.530 1.709 sum 4.316 -8.303 25.488 27.151 Atomic orbital electron populations 1.21742 0.93733 1.02987 1.02336 1.22668 0.95801 0.83348 1.00793 1.87986 1.20359 1.27278 1.95039 1.22832 0.82384 0.98283 0.96173 0.88975 1.23226 0.98552 0.89164 0.93147 1.87913 1.74673 1.14457 1.54341 1.22614 0.99060 0.86499 0.93270 1.22169 1.00871 0.99172 0.96032 1.21021 1.00446 0.94133 0.92871 0.89453 1.21631 1.03355 0.96278 0.95196 1.21144 0.79897 0.87637 0.81564 1.90637 1.38202 1.48680 1.68255 1.46093 1.50705 1.27341 1.13200 1.21247 0.98352 0.88188 0.90479 1.22481 0.96839 0.98778 0.93880 0.90014 1.23699 0.96083 1.00107 0.99454 1.21386 0.95043 0.93784 0.86460 0.92351 1.42284 1.42692 1.26121 1.24656 1.19631 1.11093 1.05230 1.01596 0.90651 1.25546 1.02534 0.97641 1.00995 1.69802 1.45156 1.15768 1.31163 0.85225 0.79194 0.76945 0.78477 1.20474 1.22217 1.20448 1.23350 0.97025 0.98786 0.98289 0.89571 0.92836 0.92593 0.92198 0.92704 0.87822 0.91004 0.88584 0.92643 0.90707 0.92188 0.87802 0.86852 0.75393 0.92000 0.91761 0.89231 0.93378 0.79330 0.94002 0.92403 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.60 6.47 71.98 0.47 1.07 16 3 O -0.39 -6.52 8.72 -141.81 -1.24 -7.75 16 4 C 0.06 0.85 2.43 30.69 0.07 0.92 16 5 H 0.09 0.85 7.79 -2.39 -0.02 0.84 16 6 C 0.04 0.51 6.49 72.01 0.47 0.97 16 7 O -0.39 -7.98 10.70 -141.81 -1.52 -9.49 16 8 C 0.06 1.14 6.84 72.02 0.49 1.63 16 9 C -0.14 -2.93 4.97 30.69 0.15 -2.77 16 10 C -0.07 -1.11 1.75 -10.67 -0.02 -1.13 16 11 H 0.09 1.53 7.96 -2.39 -0.02 1.51 16 12 C -0.12 -2.04 4.93 29.84 0.15 -1.90 16 13 C 0.51 11.53 7.57 87.65 0.66 12.20 16 14 O -0.58 -16.81 13.99 -3.03 -0.04 -16.86 16 15 N -0.72 -15.68 5.56 -463.05 -2.57 -18.26 16 16 C 0.14 3.44 5.51 86.38 0.48 3.91 16 17 C -0.10 -2.82 3.63 -10.27 -0.04 -2.85 16 18 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 19 C -0.15 -4.81 7.43 31.12 0.23 -4.58 16 20 C 0.14 5.42 4.56 45.52 0.21 5.63 16 21 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 22 N -0.72 -35.29 5.31 -320.45 -1.70 -36.99 16 23 C -0.24 -13.32 9.97 84.03 0.84 -12.48 16 24 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 25 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 26 N -0.97 -58.18 13.06 21.65 0.28 -57.89 16 27 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 30 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 31 C -0.14 -4.08 7.39 31.12 0.23 -3.85 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.56 8.09 -2.39 -0.02 0.54 16 36 H 0.05 0.55 7.86 -2.39 -0.02 0.53 16 37 H 0.10 1.18 7.86 -2.39 -0.02 1.17 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.79 6.05 -2.38 -0.01 1.78 16 42 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 43 H 0.10 1.72 7.77 -2.39 -0.02 1.70 16 44 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.41 7.65 8.47 -92.71 -0.79 6.86 16 46 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 1.62 7.84 -2.39 -0.02 1.60 16 48 H 0.09 2.45 7.90 -2.39 -0.02 2.43 16 49 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.37 19.62 7.90 -92.71 -0.73 18.89 16 51 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 52 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.10 2.60 8.10 -2.38 -0.02 2.58 16 Total: -1.00 -68.83 419.15 0.21 -68.62 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.63 Total: 39.17 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.60 Total: -8.07 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -3.99 Total: -113.14 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -2.80 Total: -34.10 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.83 0.21 -68.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691156452.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.803 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds