Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46913 * 2 1 4 4 C 1.42902 * 114.00042 * 180.02562 * 3 2 1 5 5 H 1.08992 * 110.65585 * 26.80290 * 4 3 2 6 6 C 1.54598 * 110.82883 * 263.56041 * 4 3 2 7 7 N 1.48122 * 103.42047 * 204.44271 * 6 4 3 8 8 C 1.34777 * 127.03502 * 219.28489 * 7 6 4 9 9 O 1.21283 * 119.99750 * 179.68542 * 8 7 6 10 10 C 1.50702 * 119.99928 * 359.96635 * 8 7 6 11 11 C 1.52996 * 109.47159 * 179.72352 * 10 8 7 12 12 C 1.52994 * 109.47118 * 179.97438 * 11 10 8 13 13 H 1.08993 * 110.43880 * 303.90385 * 12 11 10 14 14 C 1.54815 * 110.48750 * 181.21702 * 12 11 10 15 15 C 1.54995 * 102.09247 * 220.44365 * 14 12 11 16 16 O 1.44377 * 103.49119 * 37.02814 * 15 14 12 17 17 C 1.43742 * 106.97333 * 319.93692 * 16 15 14 18 18 C 1.47487 * 105.92931 * 39.02856 * 7 6 4 19 19 C 1.54002 * 107.08545 * 334.77652 * 18 7 6 20 20 H 1.09001 * 110.32996 * 120.19805 * 19 18 7 21 21 C 1.53003 * 110.32654 * 242.41494 * 19 18 7 22 22 N 1.46494 * 109.47016 * 293.54514 * 21 19 18 23 23 C 1.36941 * 119.99975 * 179.97438 * 22 21 19 24 24 H 1.08006 * 119.99840 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00105 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99974 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99898 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47379 * 90.00378 * 27 25 23 29 29 H 1.48503 * 109.47230 * 210.00244 * 27 25 23 30 30 H 1.48505 * 109.47465 * 330.00060 * 27 25 23 31 31 H 1.09003 * 109.46978 * 299.99800 * 1 2 3 32 32 H 1.08999 * 109.47485 * 60.00248 * 1 2 3 33 33 H 1.08997 * 109.47055 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46978 * 240.00200 * 2 1 3 35 35 H 1.08999 * 109.47485 * 119.99752 * 2 1 3 36 36 H 1.09004 * 110.61909 * 85.93384 * 6 4 3 37 37 H 1.09002 * 110.54980 * 322.92515 * 6 4 3 38 38 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 39 39 H 1.08994 * 109.46990 * 59.72065 * 10 8 7 40 40 H 1.09004 * 109.47066 * 299.99797 * 11 10 8 41 41 H 1.09000 * 109.47234 * 59.99288 * 11 10 8 42 42 H 1.08999 * 110.91027 * 338.64486 * 14 12 11 43 43 H 1.08998 * 110.90529 * 102.24484 * 14 12 11 44 44 H 1.08997 * 110.61468 * 278.52105 * 15 14 12 45 45 H 1.09002 * 110.61583 * 155.52666 * 15 14 12 46 46 H 1.09007 * 109.87958 * 267.09507 * 17 16 15 47 47 H 1.08998 * 109.88358 * 145.93970 * 17 16 15 48 48 H 1.09001 * 109.91358 * 94.14097 * 18 7 6 49 49 H 1.08998 * 109.90865 * 215.22143 * 18 7 6 50 50 H 1.09002 * 109.47325 * 53.54563 * 21 19 18 51 51 H 1.09001 * 109.47351 * 173.54485 * 21 19 18 52 52 H 0.97000 * 120.00609 * 0.02562 * 22 21 19 53 53 H 0.97003 * 119.99468 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8858 0.5832 -0.4608 6 6 3.9666 1.6649 1.4351 7 7 5.2650 2.3458 1.2236 8 6 6.4113 2.1363 1.9008 9 8 7.4078 2.7660 1.6156 10 6 6.4563 1.1151 3.0081 11 6 7.8651 1.0700 3.6033 12 6 7.9106 0.0337 4.7279 13 1 7.1542 0.2554 5.4806 14 6 9.3196 -0.0097 5.3680 15 6 9.5319 -1.5299 5.5830 16 8 8.9149 -2.1239 4.4207 17 6 7.7091 -1.3855 4.1621 18 6 5.0484 3.2955 0.1161 19 6 3.8774 2.7519 -0.7235 20 1 3.0612 3.4740 -0.7473 21 6 4.3461 2.4309 -2.1442 22 7 4.7176 3.6721 -2.8279 23 6 5.1708 3.6330 -4.1196 24 1 5.2539 2.6871 -4.6343 25 6 5.5223 4.8091 -4.7677 26 7 5.4206 5.9618 -4.1406 27 14 6.1398 4.7558 -6.5299 28 1 4.9898 4.8785 -7.4613 29 1 7.0835 5.8795 -6.7580 30 1 6.8371 3.4671 -6.7714 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 4.1120 0.7052 1.9311 37 1 3.2897 2.2974 2.0095 38 1 5.7424 1.3896 3.7848 39 1 6.1991 0.1342 2.6085 40 1 8.5790 0.7955 2.8267 41 1 8.1223 2.0510 4.0029 42 1 10.0687 0.3952 4.6875 43 1 9.3314 0.5231 6.3188 44 1 9.0338 -1.8619 6.4939 45 1 10.5950 -1.7679 5.6171 46 1 6.8663 -1.8662 4.6590 47 1 7.5288 -1.3342 3.0884 48 1 4.7952 4.2782 0.5139 49 1 5.9478 3.3634 -0.4959 50 1 5.2099 1.7675 -2.1006 51 1 3.5399 1.9421 -2.6911 52 1 4.6434 4.5216 -2.3656 53 1 5.6659 6.7837 -4.5937 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691743447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -147.872790 kcal Electronic energy + Delta-G solvation = -30329.469487 eV Core-core repulsion = 26200.094983 eV Total energy + Delta-G solvation = -4129.374504 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.40399 -40.42022 -39.57539 -37.76963 -36.43676 -35.48434 -33.94726 -32.46697 -31.96701 -31.08283 -29.52090 -29.33279 -27.33715 -25.73754 -24.77838 -23.86707 -23.26682 -23.00133 -21.44447 -21.10116 -20.24893 -19.23744 -18.37023 -18.03686 -17.55951 -17.08639 -16.79339 -16.64079 -16.52371 -16.18778 -15.80741 -15.71891 -15.55003 -15.23259 -14.83392 -14.77374 -14.41462 -14.26111 -14.04810 -13.88741 -13.56369 -13.34408 -13.21684 -13.11066 -12.97672 -12.81830 -12.74087 -12.60209 -12.38740 -12.27556 -12.24924 -12.19535 -11.99873 -11.90727 -11.73321 -11.65525 -11.59700 -11.47722 -11.02904 -10.93596 -10.56299 -10.51841 -9.76912 -9.05651 -7.98620 -5.28403 1.43959 1.46608 1.54840 1.57772 1.81515 2.51659 2.69046 3.07199 3.31096 3.35455 3.48705 3.55595 3.63887 3.80774 3.86969 3.98632 4.03841 4.18281 4.21347 4.22598 4.28673 4.31002 4.32578 4.38490 4.44076 4.48414 4.56733 4.60290 4.65450 4.65823 4.74400 4.77317 4.85618 4.86898 4.88494 4.89463 4.96653 4.97991 4.98779 5.08541 5.12909 5.13098 5.21747 5.27104 5.35709 5.37283 5.44748 5.99118 6.22947 6.30785 6.50156 7.10567 7.29323 8.02957 8.26765 9.24971 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008781 B = 0.002645 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.816900 B =10584.358328 C =12799.944647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.387 6.387 4 C 0.093 3.907 5 H 0.086 0.914 6 C 0.089 3.911 7 N -0.618 5.618 8 C 0.519 3.481 9 O -0.592 6.592 10 C -0.125 4.125 11 C -0.092 4.092 12 C -0.114 4.114 13 H 0.111 0.889 14 C -0.154 4.154 15 C 0.042 3.958 16 O -0.411 6.411 17 C 0.042 3.958 18 C 0.119 3.881 19 C -0.096 4.096 20 H 0.089 0.911 21 C 0.167 3.833 22 N -0.744 5.744 23 C -0.248 4.248 24 H 0.075 0.925 25 C -0.076 4.076 26 N -0.969 5.969 27 Si 0.975 3.025 28 H -0.283 1.283 29 H -0.295 1.295 30 H -0.270 1.270 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.014 0.986 51 H 0.026 0.974 52 H 0.374 0.626 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 -18.846 24.717 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.306 6.306 4 C 0.033 3.967 5 H 0.104 0.896 6 C -0.033 4.033 7 N -0.353 5.353 8 C 0.311 3.689 9 O -0.473 6.473 10 C -0.164 4.164 11 C -0.130 4.130 12 C -0.132 4.132 13 H 0.129 0.871 14 C -0.191 4.191 15 C -0.034 4.034 16 O -0.331 6.331 17 C -0.034 4.034 18 C -0.005 4.005 19 C -0.116 4.116 20 H 0.107 0.893 21 C 0.040 3.960 22 N -0.387 5.387 23 C -0.380 4.380 24 H 0.093 0.907 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.804 3.196 28 H -0.210 1.210 29 H -0.222 1.222 30 H -0.195 1.195 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.032 0.968 51 H 0.044 0.956 52 H 0.206 0.794 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.013 -18.660 24.344 30.934 hybrid contribution 0.618 1.091 -1.362 1.851 sum -3.395 -17.569 22.982 29.127 Atomic orbital electron populations 1.21766 0.93063 1.03343 1.02575 1.22806 0.96251 0.82574 1.01348 1.87957 1.19287 1.28444 1.94865 1.22927 0.81945 0.96899 0.94914 0.89645 1.23074 0.83303 0.99893 0.97070 1.48850 1.11084 1.40621 1.34723 1.21369 0.80340 0.83954 0.83263 1.90729 1.35381 1.52081 1.69084 1.21786 1.00549 0.98171 0.95872 1.21321 0.95216 0.99340 0.97139 1.22573 0.98739 0.94289 0.97598 0.87058 1.23233 0.96518 0.97126 1.02245 1.23718 0.99282 0.91655 0.88788 1.88851 1.38935 1.56965 1.48346 1.23483 0.87789 0.90639 1.01491 1.21827 0.97804 0.92795 0.88043 1.22208 0.96847 0.98635 0.93883 0.89293 1.20770 0.95975 0.88590 0.90672 1.42540 1.78933 1.04547 1.12638 1.19613 1.34765 0.93251 0.90367 0.90712 1.25613 1.03310 0.95084 1.02778 1.69824 1.56102 0.97605 1.38399 0.85114 0.77638 0.77057 0.79795 1.20954 1.22156 1.19516 0.91659 0.93313 0.89036 0.93302 0.90688 0.85809 0.88616 0.85364 0.86384 0.93426 0.91958 0.91725 0.88259 0.90480 0.88697 0.90261 0.90177 0.91952 0.93367 0.96795 0.95633 0.79379 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.33 16 2 C 0.05 0.72 6.49 71.98 0.47 1.19 16 3 O -0.39 -8.75 10.09 -148.98 -1.50 -10.26 16 4 C 0.09 2.14 3.09 31.69 0.10 2.24 16 5 H 0.09 1.86 7.54 -2.39 -0.02 1.84 16 6 C 0.09 1.56 6.65 86.61 0.58 2.14 16 7 N -0.62 -16.47 3.29 -810.05 -2.67 -19.14 16 8 C 0.52 14.45 7.89 87.66 0.69 15.14 16 9 O -0.59 -23.32 16.32 -3.04 -0.05 -23.37 16 10 C -0.12 -1.89 4.46 29.85 0.13 -1.75 16 11 C -0.09 -1.60 3.73 30.59 0.11 -1.49 16 12 C -0.11 -1.30 3.08 -9.80 -0.03 -1.33 16 13 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 14 C -0.15 -1.84 6.71 31.90 0.21 -1.63 16 15 C 0.04 0.52 7.72 72.66 0.56 1.08 16 16 O -0.41 -7.73 11.52 -148.98 -1.72 -9.44 16 17 C 0.04 0.55 6.93 72.35 0.50 1.06 16 18 C 0.12 4.14 6.31 86.53 0.55 4.69 16 19 C -0.10 -3.15 2.83 -9.90 -0.03 -3.18 16 20 H 0.09 3.09 8.07 -2.39 -0.02 3.08 16 21 C 0.17 6.91 5.34 86.38 0.46 7.37 16 22 N -0.74 -39.56 5.33 -343.45 -1.83 -41.39 16 23 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 24 H 0.07 4.18 7.83 -2.91 -0.02 4.15 16 25 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 26 N -0.97 -61.48 13.06 21.65 0.28 -61.19 16 27 Si 0.98 47.77 29.55 68.60 2.03 49.79 16 28 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 29 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 30 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.78 8.11 -2.39 -0.02 0.76 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 1.14 7.23 -2.38 -0.02 1.13 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.12 1.22 6.62 -2.39 -0.02 1.21 16 40 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 41 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 42 H 0.06 0.99 7.87 -2.39 -0.02 0.97 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.08 1.11 6.70 -2.39 -0.02 1.10 16 48 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.05 2.12 7.49 -2.39 -0.02 2.11 16 50 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.37 21.14 7.51 -92.71 -0.70 20.44 16 53 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -80.67 420.97 1.07 -79.60 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.18 Total: 28.88 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 6.35 Total: 6.52 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -4.22 Total: -121.72 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -3.27 Total: -43.07 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.79 kcal Total: -80.67 1.07 -79.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691743447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.272 kcal (2) G-P(sol) polarization free energy of solvation -80.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds