Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.46920 * 2 1 4 4 C 1.42902 * 114.00049 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46974 * 184.31688 * 5 4 3 7 7 C 1.50707 * 112.90746 * 306.07793 * 6 5 4 8 8 O 1.21280 * 120.00101 * 103.04308 * 7 6 5 9 9 N 1.34773 * 119.99983 * 283.04287 * 7 6 5 10 10 C 1.46495 * 120.00016 * 185.31009 * 9 7 6 11 11 C 1.53001 * 109.47268 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.64334 * 66.68919 * 11 10 9 13 13 C 1.55162 * 110.72018 * 190.02486 * 11 10 9 14 14 C 1.54907 * 101.58109 * 153.86464 * 13 11 10 15 15 N 1.47427 * 104.83432 * 322.99023 * 14 13 11 16 16 C 1.36935 * 125.65146 * 204.15911 * 15 14 13 17 17 H 1.08002 * 120.00308 * 179.97438 * 16 15 14 18 18 C 1.38809 * 119.99811 * 359.96315 * 16 15 14 19 19 N 1.31618 * 120.00366 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99801 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46825 * 90.00243 * 20 18 16 22 22 H 1.48500 * 109.46910 * 209.99940 * 20 18 16 23 23 H 1.48497 * 109.47243 * 330.00173 * 20 18 16 24 24 C 1.47028 * 108.70297 * 24.13056 * 15 14 13 25 25 C 1.53780 * 113.61768 * 174.83084 * 6 5 4 26 26 C 1.53781 * 87.17296 * 220.06200 * 25 6 5 27 27 C 1.53781 * 87.08201 * 25.38720 * 26 25 6 28 28 H 1.09000 * 109.46928 * 299.99671 * 1 2 3 29 29 H 1.08996 * 109.47104 * 59.99522 * 1 2 3 30 30 H 1.09004 * 109.46665 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46928 * 240.00329 * 2 1 3 32 32 H 1.08996 * 109.47104 * 120.00477 * 2 1 3 33 33 H 1.08997 * 109.47398 * 59.99682 * 4 3 2 34 34 H 1.09005 * 109.46721 * 300.00277 * 4 3 2 35 35 H 1.08999 * 109.47202 * 64.31581 * 5 4 3 36 36 H 1.08994 * 109.47350 * 304.31880 * 5 4 3 37 37 H 0.97003 * 120.00236 * 5.31739 * 9 7 6 38 38 H 1.09001 * 109.47389 * 300.00103 * 10 9 7 39 39 H 1.09007 * 109.47068 * 60.00192 * 10 9 7 40 40 H 0.96704 * 113.99789 * 300.70587 * 12 11 10 41 41 H 1.08994 * 111.00244 * 271.93892 * 13 11 10 42 42 H 1.09001 * 111.00269 * 35.79227 * 13 11 10 43 43 H 1.08998 * 110.37247 * 204.15364 * 14 13 11 44 44 H 1.08996 * 110.36692 * 81.82715 * 14 13 11 45 45 H 0.97000 * 120.00343 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.87741 * 239.52600 * 24 15 14 47 47 H 1.08997 * 109.88390 * 118.35651 * 24 15 14 48 48 H 1.08992 * 113.62091 * 105.46384 * 25 6 5 49 49 H 1.09003 * 113.60953 * 334.64690 * 25 6 5 50 50 H 1.08999 * 113.61527 * 139.93914 * 26 25 6 51 51 H 1.09000 * 113.60828 * 270.83498 * 26 25 6 52 52 H 1.08994 * 113.61694 * 89.12143 * 27 26 25 53 53 H 1.08998 * 113.61121 * 219.93822 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9385 0.0001 6 6 5.3466 3.0604 -0.1091 7 6 6.0757 2.2700 0.9468 8 8 6.5970 1.2129 0.6610 9 7 6.1486 2.7379 2.2086 10 6 6.9541 2.0302 3.2068 11 6 6.8661 2.7641 4.5465 12 8 5.5411 2.6885 5.0763 13 6 7.8979 2.1923 5.5544 14 6 8.1316 3.4091 6.4842 15 7 8.0917 4.5805 5.5901 16 6 8.6849 5.7906 5.8330 17 1 8.5974 6.5895 5.1115 18 6 9.3984 5.9905 7.0067 19 7 9.5045 5.0172 7.8864 20 14 10.2083 7.6410 7.3378 21 1 9.2564 8.5236 8.0589 22 1 11.4224 7.4388 8.1686 23 1 10.5899 8.2726 6.0491 24 6 7.3100 4.2342 4.3939 25 6 5.8403 4.5106 -0.2436 26 6 6.8615 3.9875 -1.2675 27 6 5.8844 2.8301 -1.5331 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8334 0.9768 -0.8907 34 1 3.8340 0.9764 0.8892 35 1 3.4891 3.4038 0.9267 36 1 3.3589 3.4394 -0.8481 37 1 5.6676 3.5432 2.4558 38 1 6.5770 1.0143 3.3241 39 1 7.9928 1.9966 2.8781 40 1 4.8646 3.0691 4.4996 41 1 7.4789 1.3522 6.1082 42 1 8.8196 1.9043 5.0489 43 1 9.1050 3.3349 6.9689 44 1 7.3395 3.4741 7.2301 45 1 10.0035 5.1568 8.7064 46 1 7.9279 4.3443 3.5027 47 1 6.4350 4.8802 4.3230 48 1 6.2955 4.9030 0.6657 49 1 5.0996 5.1860 -0.6716 50 1 6.9989 4.6481 -2.1236 51 1 7.8038 3.6698 -0.8212 52 1 5.1549 3.0449 -2.3139 53 1 6.3754 1.8661 -1.6662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699899476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -117.753771 kcal Electronic energy + Delta-G solvation = -31271.905375 eV Core-core repulsion = 27143.836930 eV Total energy + Delta-G solvation = -4128.068445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95615 -40.35502 -39.01843 -38.40863 -36.81902 -35.40551 -33.99569 -33.45861 -31.51923 -31.23171 -29.83076 -27.72139 -26.70464 -26.33174 -25.21616 -23.71642 -23.42862 -22.43673 -21.95543 -21.36231 -20.32402 -18.90259 -18.17727 -17.77972 -17.36813 -17.28752 -16.94531 -16.75917 -16.64203 -15.86824 -15.79260 -15.49586 -15.43066 -15.27430 -15.08443 -14.68941 -14.54599 -14.13444 -13.89913 -13.62202 -13.55996 -13.34233 -13.28936 -13.24806 -12.96806 -12.93233 -12.77804 -12.42789 -12.39647 -12.11293 -12.10605 -12.02218 -12.00637 -11.82440 -11.79104 -11.62240 -11.28509 -11.18968 -10.99010 -10.76508 -10.72255 -10.60323 -10.21513 -8.91867 -7.78395 -5.23500 1.46904 1.48788 1.52201 1.57430 2.02261 2.48399 2.60661 3.12644 3.31186 3.36212 3.40727 3.55907 3.65983 3.73444 3.88739 3.89151 3.92305 3.99200 4.07508 4.15952 4.18497 4.40944 4.43811 4.44447 4.46691 4.52168 4.57878 4.64004 4.77023 4.81343 4.83623 4.89041 4.89907 4.92722 4.96142 5.01306 5.04276 5.05095 5.07851 5.12300 5.22991 5.26182 5.29195 5.44784 5.45617 5.59167 5.78096 6.19495 6.27801 6.40604 6.74832 7.08248 7.12536 7.75470 8.39242 9.23823 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.002628 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.595263 B =10653.856171 C =11585.783438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.064 3.936 5 C -0.088 4.088 6 C -0.104 4.104 7 C 0.538 3.462 8 O -0.575 6.575 9 N -0.716 5.716 10 C 0.119 3.881 11 C 0.125 3.875 12 O -0.554 6.554 13 C -0.121 4.121 14 C 0.160 3.840 15 N -0.622 5.622 16 C -0.238 4.238 17 H 0.084 0.916 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.981 3.019 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.114 3.886 25 C -0.117 4.117 26 C -0.146 4.146 27 C -0.115 4.115 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.029 0.971 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.410 0.590 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.384 0.616 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.075 0.925 44 H -0.016 1.016 45 H 0.247 0.753 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.069 0.931 49 H 0.120 0.880 50 H 0.091 0.909 51 H 0.058 0.942 52 H 0.114 0.886 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.738 -6.019 -20.687 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.323 6.323 4 C -0.012 4.012 5 C -0.126 4.126 6 C -0.107 4.107 7 C 0.326 3.674 8 O -0.454 6.454 9 N -0.368 5.368 10 C -0.005 4.005 11 C 0.084 3.916 12 O -0.362 6.362 13 C -0.160 4.160 14 C 0.035 3.965 15 N -0.348 5.348 16 C -0.367 4.367 17 H 0.102 0.898 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.192 1.192 24 C -0.011 4.011 25 C -0.154 4.154 26 C -0.183 4.183 27 C -0.153 4.153 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.247 0.753 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.233 0.767 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.002 0.998 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.088 0.912 49 H 0.139 0.861 50 H 0.110 0.890 51 H 0.077 0.923 52 H 0.132 0.868 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.039 -6.788 -20.247 25.556 hybrid contribution 0.407 0.918 0.572 1.156 sum -13.632 -5.871 -19.674 24.645 Atomic orbital electron populations 1.21753 0.92369 1.03385 1.02933 1.22642 0.96680 0.83103 1.00379 1.87819 1.21261 1.27675 1.95510 1.22452 0.80854 0.98157 0.99757 1.21390 0.91067 0.94761 1.05352 1.21980 0.95135 0.98321 0.95307 1.20435 0.78999 0.85055 0.82951 1.90677 1.48755 1.24301 1.81638 1.45874 1.50725 1.30458 1.09746 1.21770 0.96260 0.96209 0.86298 1.22204 0.83734 0.93906 0.91792 1.86595 1.16008 1.83896 1.49664 1.22910 0.97120 0.98645 0.97315 1.21646 1.00019 0.83904 0.90910 1.44695 1.60203 1.11010 1.18907 1.19460 1.24828 0.89677 1.02744 0.89769 1.25672 1.02004 1.01643 0.96812 1.70048 1.46840 1.32414 1.10656 0.85032 0.77310 0.78821 0.77877 1.21449 1.22100 1.19153 1.22101 0.94728 0.94018 0.90260 1.23064 0.99117 0.92999 1.00251 1.22836 0.96941 0.98280 1.00249 1.22978 0.99072 0.99282 0.93937 0.92265 0.91710 0.89377 0.92765 0.93736 0.93118 0.95271 0.89829 0.87797 0.75329 0.90613 0.91112 0.76659 0.89721 0.89554 0.90673 0.99786 0.94314 0.94384 0.94644 0.91199 0.86143 0.89029 0.92283 0.86788 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 71.98 0.74 -1.10 16 2 C 0.05 0.79 6.66 71.98 0.48 1.27 16 3 O -0.40 -8.10 10.34 -148.98 -1.54 -9.64 16 4 C 0.06 1.24 5.52 71.98 0.40 1.64 16 5 C -0.09 -1.31 5.05 30.59 0.15 -1.16 16 6 C -0.10 -1.77 0.83 -52.34 -0.04 -1.81 16 7 C 0.54 13.00 5.23 87.66 0.46 13.46 16 8 O -0.57 -18.31 16.15 -3.03 -0.05 -18.36 16 9 N -0.72 -16.24 4.89 -463.06 -2.26 -18.51 16 10 C 0.12 3.29 4.80 86.38 0.42 3.70 16 11 C 0.13 4.07 0.93 -9.60 -0.01 4.07 16 12 O -0.55 -17.43 13.10 -148.98 -1.95 -19.38 16 13 C -0.12 -4.59 6.26 31.99 0.20 -4.39 16 14 C 0.16 8.05 5.88 86.85 0.51 8.57 16 15 N -0.62 -31.57 3.39 -691.98 -2.35 -33.92 16 16 C -0.24 -13.16 10.27 84.03 0.86 -12.29 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 19 N -0.95 -56.87 10.09 21.65 0.22 -56.66 16 20 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.11 4.37 5.76 86.73 0.50 4.87 16 25 C -0.12 -1.62 7.14 31.12 0.22 -1.40 16 26 C -0.15 -2.31 7.81 31.12 0.24 -2.07 16 27 C -0.12 -1.86 6.92 31.18 0.22 -1.64 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.98 7.96 -2.39 -0.02 0.96 16 34 H 0.03 0.66 7.43 -2.38 -0.02 0.65 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.21 8.06 -2.39 -0.02 1.19 16 37 H 0.41 7.64 7.21 -92.71 -0.67 6.97 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 2.10 8.03 -2.38 -0.02 2.08 16 40 H 0.38 8.63 8.44 -74.05 -0.62 8.01 16 41 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 3.08 7.96 -2.39 -0.02 3.06 16 43 H 0.08 4.27 5.87 -2.39 -0.01 4.26 16 44 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 45 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 46 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 47 H 0.04 1.28 8.07 -2.39 -0.02 1.26 16 48 H 0.07 1.09 7.70 -2.39 -0.02 1.07 16 49 H 0.12 1.08 8.10 -2.39 -0.02 1.06 16 50 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.11 1.28 8.04 -2.39 -0.02 1.26 16 53 H 0.06 1.25 7.43 -2.39 -0.02 1.23 16 Total: -1.00 -72.80 417.49 -0.50 -73.29 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.40 Total: 27.58 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.81 Total: 8.28 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.39 Total: -109.08 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -3.54 Total: -47.39 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.80 -0.50 -73.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699899476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.461 kcal (2) G-P(sol) polarization free energy of solvation -72.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds