Wall clock time and date at job start Sat Apr 11 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47070 * 2 1 4 4 C 1.42899 * 113.99969 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47092 * 29.99934 * 4 3 2 6 6 C 1.50697 * 109.47161 * 269.99911 * 4 3 2 7 7 O 1.21289 * 120.00058 * 343.88831 * 6 4 3 8 8 N 1.34770 * 120.00093 * 163.89050 * 6 4 3 9 9 C 1.47744 * 125.82232 * 5.84029 * 8 6 4 10 10 C 1.54913 * 104.84207 * 155.83143 * 9 8 6 11 11 C 1.55149 * 101.58127 * 37.09229 * 10 9 8 12 12 C 1.47018 * 125.64894 * 185.93218 * 8 6 4 13 13 H 1.09004 * 109.88723 * 300.59818 * 12 8 6 14 14 C 1.53001 * 109.88389 * 61.60925 * 12 8 6 15 15 N 1.46500 * 109.46863 * 284.45762 * 14 12 8 16 16 C 1.36939 * 120.00245 * 171.78107 * 15 14 12 17 17 H 1.08002 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00017 * 179.97438 * 16 15 14 19 19 N 1.31610 * 120.00360 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99513 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46861 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47418 * 299.99973 * 20 18 16 23 23 H 1.48497 * 109.47125 * 60.00383 * 20 18 16 24 24 C 1.53002 * 109.46754 * 150.00010 * 4 3 2 25 25 C 1.53171 * 109.54622 * 56.16305 * 24 4 3 26 26 C 1.53090 * 109.16275 * 183.14775 * 25 24 4 27 27 O 1.42909 * 109.41601 * 57.61450 * 26 25 24 28 28 C 1.42900 * 114.09216 * 298.84252 * 27 26 25 29 29 C 1.53088 * 109.41959 * 61.15322 * 28 27 26 30 30 H 1.09001 * 109.46947 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47266 * 300.00279 * 1 2 3 32 32 H 1.09000 * 109.46855 * 60.00626 * 1 2 3 33 33 H 1.08997 * 109.47266 * 239.99721 * 2 1 3 34 34 H 1.08996 * 109.47037 * 119.99840 * 2 1 3 35 35 H 1.08998 * 110.29462 * 37.02806 * 9 8 6 36 36 H 1.08997 * 110.53011 * 274.75409 * 9 8 6 37 37 H 1.09001 * 111.00385 * 279.01743 * 10 9 8 38 38 H 1.09002 * 111.03777 * 155.18054 * 10 9 8 39 39 H 1.09001 * 110.72375 * 206.13472 * 11 10 9 40 40 H 1.09006 * 110.87459 * 82.93689 * 11 10 9 41 41 H 1.09001 * 109.47544 * 164.45620 * 14 12 8 42 42 H 1.08998 * 109.47209 * 44.45287 * 14 12 8 43 43 H 0.96998 * 120.00165 * 351.78043 * 15 14 12 44 44 H 0.97004 * 120.00126 * 359.97438 * 19 18 16 45 45 H 1.09005 * 109.53733 * 176.43033 * 24 4 3 46 46 H 1.08992 * 109.52354 * 303.05802 * 25 24 4 47 47 H 1.09012 * 109.52234 * 63.25031 * 25 24 4 48 48 H 1.08995 * 109.48459 * 297.62647 * 26 25 24 49 49 H 1.09002 * 109.48175 * 177.59375 * 26 25 24 50 50 H 1.09004 * 109.48133 * 301.17245 * 28 27 26 51 51 H 1.08996 * 109.48867 * 181.15032 * 28 27 26 52 52 H 1.09000 * 109.52671 * 182.48276 * 29 28 27 53 53 H 1.09002 * 109.52270 * 62.29977 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5129 6 6 3.9311 1.5000 1.4216 7 8 3.1607 1.7316 2.3294 8 7 5.2343 1.2784 1.6837 9 6 6.3017 1.1059 0.6769 10 6 7.6072 1.5023 1.4107 11 6 7.3472 0.9414 2.8337 12 6 5.8320 1.1659 3.0222 13 1 5.6604 2.0844 3.5834 14 6 5.2190 -0.0213 3.7677 15 7 3.8726 0.3317 4.2248 16 6 3.0612 -0.6272 4.7700 17 1 3.4140 -1.6437 4.8634 18 6 1.7857 -0.2925 5.2036 19 7 1.3560 0.9463 5.0903 20 14 0.6787 -1.6009 5.9467 21 1 -0.6213 -0.9919 6.3265 22 1 0.4480 -2.6781 4.9509 23 1 1.3291 -2.1729 7.1529 24 6 3.8409 2.7456 -0.7207 25 6 3.1567 3.9454 -0.0584 26 6 3.5101 5.2168 -0.8343 27 8 3.1078 5.0686 -2.1976 28 6 3.7509 3.9913 -2.8817 29 6 3.4073 2.6706 -2.1879 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 6.1294 1.7656 -0.1736 36 1 6.3520 0.0683 0.3471 37 1 7.7291 2.5852 1.4337 38 1 8.4735 1.0233 0.9542 39 1 7.9153 1.4995 3.5780 40 1 7.5888 -0.1204 2.8828 41 1 5.8408 -0.2709 4.6275 42 1 5.1620 -0.8801 3.0990 43 1 3.5559 1.2448 4.1413 44 1 1.9307 1.6256 4.7041 45 1 4.9230 2.8652 -0.6659 46 1 2.0765 3.8004 -0.0691 47 1 3.5024 4.0392 0.9712 48 1 4.5863 5.3832 -0.7889 49 1 2.9916 6.0680 -0.3929 50 1 4.8303 4.1416 -2.8631 51 1 3.4062 3.9595 -3.9152 52 1 3.9321 1.8525 -2.6814 53 1 2.3321 2.4998 -2.2417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714344226.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:12 Heat of formation + Delta-G solvation = -133.511206 kcal Electronic energy + Delta-G solvation = -33252.165515 eV Core-core repulsion = 29123.413776 eV Total energy + Delta-G solvation = -4128.751739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.72942 -40.23765 -39.14951 -37.89548 -36.59710 -35.36509 -33.33266 -32.58955 -32.09430 -32.04530 -30.22661 -28.78598 -26.48862 -25.18547 -24.58566 -24.49902 -23.83868 -23.03337 -21.99367 -21.12136 -20.12069 -19.29812 -18.32461 -17.90465 -17.56714 -17.17792 -17.01736 -16.72019 -16.25750 -15.86354 -15.72502 -15.62923 -15.25883 -15.22242 -15.15024 -14.85927 -14.70949 -14.23288 -14.10187 -13.84426 -13.57140 -13.41212 -13.25210 -13.05247 -12.91418 -12.85732 -12.59154 -12.56257 -12.41184 -12.27030 -12.21449 -12.15857 -11.90795 -11.87463 -11.71010 -11.62419 -11.28758 -11.18914 -11.15050 -10.92251 -10.55403 -10.12448 -9.57437 -8.94709 -8.32118 -5.21168 1.47622 1.60550 1.71165 1.77123 1.93495 2.61809 2.71008 2.97339 3.36099 3.46998 3.51470 3.59370 3.61831 3.74903 3.87113 3.96180 3.97614 4.03615 4.11147 4.11814 4.23685 4.27094 4.29974 4.32338 4.35138 4.36649 4.55267 4.56759 4.64362 4.68025 4.68584 4.72639 4.77495 4.78817 4.85585 4.89063 4.93511 4.94237 5.06880 5.10748 5.11572 5.15069 5.18433 5.33772 5.39692 5.48104 5.56769 6.03688 6.27807 6.58763 6.63980 7.16934 7.45597 8.20823 8.31294 9.20619 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.004662 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.424642 B = 6005.114302 C = 7636.354528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 O -0.369 6.369 4 C 0.093 3.907 5 H 0.100 0.900 6 C 0.485 3.515 7 O -0.534 6.534 8 N -0.618 5.618 9 C 0.084 3.916 10 C -0.115 4.115 11 C -0.115 4.115 12 C 0.130 3.870 13 H 0.041 0.959 14 C 0.150 3.850 15 N -0.748 5.748 16 C -0.339 4.339 17 H 0.053 0.947 18 C -0.103 4.103 19 N -0.968 5.968 20 Si 1.125 2.875 21 H -0.292 1.292 22 H -0.281 1.281 23 H -0.275 1.275 24 C -0.070 4.070 25 C -0.143 4.143 26 C 0.070 3.930 27 O -0.403 6.403 28 C 0.058 3.942 29 C -0.142 4.142 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.008 0.992 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.019 0.981 42 H 0.009 0.991 43 H 0.373 0.627 44 H 0.246 0.754 45 H 0.111 0.889 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.111 0.889 52 H 0.103 0.897 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.186 2.352 -21.378 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 O -0.287 6.287 4 C 0.031 3.969 5 H 0.118 0.882 6 C 0.273 3.727 7 O -0.408 6.408 8 N -0.356 5.356 9 C -0.037 4.037 10 C -0.153 4.153 11 C -0.153 4.153 12 C 0.025 3.975 13 H 0.059 0.941 14 C 0.022 3.978 15 N -0.399 5.399 16 C -0.471 4.471 17 H 0.071 0.929 18 C -0.295 4.295 19 N -0.615 5.615 20 Si 0.950 3.050 21 H -0.218 1.218 22 H -0.207 1.207 23 H -0.201 1.201 24 C -0.089 4.089 25 C -0.181 4.181 26 C -0.006 4.006 27 O -0.322 6.322 28 C -0.018 4.018 29 C -0.180 4.180 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.027 0.973 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.036 0.964 42 H 0.027 0.973 43 H 0.211 0.789 44 H 0.056 0.944 45 H 0.129 0.871 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.091 0.909 51 H 0.129 0.871 52 H 0.122 0.878 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.983 2.277 -20.334 24.233 hybrid contribution 1.107 -0.025 0.512 1.220 sum 14.090 2.252 -19.822 24.424 Atomic orbital electron populations 1.21670 0.92952 1.03143 1.02137 1.22577 0.96662 0.83166 0.99317 1.87982 1.19377 1.27163 1.94147 1.22096 0.82917 1.01323 0.90566 0.88234 1.21707 0.81152 0.77019 0.92803 1.90749 1.55484 1.46822 1.47775 1.48767 1.07015 1.71925 1.07864 1.22846 0.86504 1.02461 0.91860 1.22778 0.96873 1.02311 0.93308 1.22618 0.89915 1.03168 0.99605 1.21805 0.95109 0.96270 0.84268 0.94112 1.21125 0.86244 0.95569 0.94890 1.42981 1.12923 1.09813 1.74157 1.20288 0.98639 0.91723 1.36455 0.92909 1.27157 0.97884 1.02315 1.02137 1.70831 1.39482 1.02358 1.48876 0.82705 0.74291 0.72022 0.75972 1.21805 1.20703 1.20074 1.21359 1.01029 0.90761 0.95701 1.22035 1.01073 0.96297 0.98710 1.22538 1.00268 0.96317 0.81497 1.87913 1.68222 1.52151 1.23955 1.22793 0.97909 0.84578 0.96496 1.22211 1.02749 1.00052 0.92980 0.89296 0.95180 0.90062 0.89956 0.97328 0.88330 0.90385 0.89830 0.86230 0.88759 0.89611 0.96377 0.97297 0.78857 0.94352 0.87127 0.93141 0.93673 0.91082 0.89023 0.90922 0.87081 0.87827 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 10.28 71.98 0.74 -3.84 16 2 C 0.06 2.04 6.46 71.98 0.46 2.50 16 3 O -0.37 -13.59 8.12 -130.46 -1.06 -14.65 16 4 C 0.09 2.78 1.59 29.85 0.05 2.83 16 5 H 0.10 2.40 7.58 -2.39 -0.02 2.39 16 6 C 0.49 19.06 5.81 87.66 0.51 19.57 16 7 O -0.53 -28.68 13.02 15.47 0.20 -28.48 16 8 N -0.62 -19.49 3.07 -787.25 -2.42 -21.91 16 9 C 0.08 1.50 6.48 86.79 0.56 2.06 16 10 C -0.12 -1.53 7.08 31.98 0.23 -1.31 16 11 C -0.11 -2.39 6.44 31.78 0.20 -2.18 16 12 C 0.13 4.48 3.02 45.34 0.14 4.62 16 13 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 14 C 0.15 6.79 5.61 86.38 0.48 7.28 16 15 N -0.75 -44.07 4.37 -343.45 -1.50 -45.57 16 16 C -0.34 -21.72 9.99 84.03 0.84 -20.88 16 17 H 0.05 3.29 7.83 -2.91 -0.02 3.26 16 18 C -0.10 -6.71 5.50 84.86 0.47 -6.24 16 19 N -0.97 -68.82 13.70 21.65 0.30 -68.52 16 20 Si 1.13 57.74 29.92 68.60 2.05 59.79 16 21 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 24 C -0.07 -1.58 1.98 -10.68 -0.02 -1.60 16 25 C -0.14 -4.14 5.03 30.68 0.15 -3.98 16 26 C 0.07 1.57 6.84 72.01 0.49 2.06 16 27 O -0.40 -9.19 10.77 -148.98 -1.60 -10.79 16 28 C 0.06 0.88 6.84 72.01 0.49 1.38 16 29 C -0.14 -2.46 5.34 30.68 0.16 -2.30 16 30 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.10 8.09 -2.39 -0.02 2.08 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.10 1.24 5.42 -2.39 -0.01 1.23 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.69 7.85 -2.38 -0.02 1.67 16 41 H 0.02 0.82 8.09 -2.39 -0.02 0.81 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.37 23.68 3.92 -92.71 -0.36 23.32 16 44 H 0.25 18.15 6.65 -92.71 -0.62 17.53 16 45 H 0.11 1.88 5.70 -2.38 -0.01 1.86 16 46 H 0.05 1.81 7.50 -2.39 -0.02 1.79 16 47 H 0.04 1.55 7.45 -2.38 -0.02 1.53 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.06 1.38 7.70 -2.39 -0.02 1.36 16 Total: -1.00 -94.10 404.46 2.60 -91.49 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.67 Total: 38.68 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.97 Total: -0.04 kcal Atomic # 7 Polarization: -132.38 SS G_CDS: -3.62 Total: -136.00 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -2.46 Total: -53.93 kcal Atomic # 14 Polarization: 57.74 SS G_CDS: 2.05 Total: 59.79 kcal Total: -94.10 2.60 -91.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714344226.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.020 kcal (2) G-P(sol) polarization free energy of solvation -94.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds