Wall clock time and date at job start Sat Apr 11 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46833 * 2 1 4 4 C 1.42900 * 113.99872 * 175.28537 * 3 2 1 5 5 H 1.08997 * 109.47214 * 14.67002 * 4 3 2 6 6 C 1.50693 * 109.47514 * 134.67780 * 4 3 2 7 7 O 1.21284 * 119.99820 * 7.69032 * 6 4 3 8 8 N 1.34774 * 119.99994 * 187.69757 * 6 4 3 9 9 C 1.47418 * 125.65150 * 6.17052 * 8 6 4 10 10 C 1.54909 * 104.83769 * 155.90988 * 9 8 6 11 11 C 1.55161 * 101.58261 * 37.00699 * 10 9 8 12 12 C 1.47028 * 125.64864 * 186.21407 * 8 6 4 13 13 H 1.08998 * 109.88011 * 300.59268 * 12 8 6 14 14 C 1.53001 * 109.88407 * 61.60095 * 12 8 6 15 15 N 1.46494 * 109.47289 * 283.89022 * 14 12 8 16 16 C 1.36936 * 120.00388 * 172.03087 * 15 14 12 17 17 H 1.08005 * 119.99691 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00217 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00300 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00004 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47108 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46992 * 300.00214 * 20 18 16 23 23 H 1.48505 * 109.46933 * 59.99800 * 20 18 16 24 24 C 1.53001 * 109.46634 * 254.67591 * 4 3 2 25 25 C 1.53179 * 109.54659 * 64.13817 * 24 4 3 26 26 C 1.53102 * 109.15759 * 183.23878 * 25 24 4 27 27 O 1.42898 * 109.48474 * 57.47775 * 26 25 24 28 28 C 1.42904 * 114.09515 * 298.88200 * 27 26 25 29 29 C 1.53090 * 109.41344 * 61.16682 * 28 27 26 30 30 H 1.08996 * 109.46919 * 300.00002 * 1 2 3 31 31 H 1.09001 * 109.47071 * 60.00369 * 1 2 3 32 32 H 1.09002 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46919 * 239.99998 * 2 1 3 34 34 H 1.09001 * 109.47071 * 119.99631 * 2 1 3 35 35 H 1.09006 * 110.36536 * 274.74462 * 9 8 6 36 36 H 1.08996 * 110.36679 * 36.95612 * 9 8 6 37 37 H 1.08999 * 111.00740 * 155.08365 * 10 9 8 38 38 H 1.09002 * 111.00436 * 278.89959 * 10 9 8 39 39 H 1.08994 * 110.72179 * 206.13726 * 11 10 9 40 40 H 1.09002 * 110.71770 * 82.86246 * 11 10 9 41 41 H 1.09000 * 109.47020 * 163.88581 * 14 12 8 42 42 H 1.09000 * 109.46728 * 43.88470 * 14 12 8 43 43 H 0.97008 * 120.00360 * 352.02683 * 15 14 12 44 44 H 0.97001 * 119.99774 * 0.02562 * 19 18 16 45 45 H 1.09007 * 109.54097 * 184.31461 * 24 4 3 46 46 H 1.09001 * 109.52271 * 303.05913 * 25 24 4 47 47 H 1.09001 * 109.52312 * 63.24330 * 25 24 4 48 48 H 1.08996 * 109.40912 * 297.48933 * 26 25 24 49 49 H 1.09004 * 109.48808 * 177.51130 * 26 25 24 50 50 H 1.09000 * 109.48371 * 301.17915 * 28 27 26 51 51 H 1.09005 * 109.48679 * 181.15053 * 28 27 26 52 52 H 1.09004 * 109.52284 * 182.48511 * 29 28 27 53 53 H 1.09001 * 109.57961 * 62.32437 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4616 0.1073 5 1 3.8852 0.4930 -0.0916 6 6 3.9267 2.4695 -0.8952 7 8 3.1372 3.1352 -1.5312 8 7 5.2512 2.6311 -1.0851 9 6 6.3128 1.8064 -0.4800 10 6 7.5234 1.9549 -1.4351 11 6 7.4030 3.4418 -1.8618 12 6 5.8767 3.6595 -1.9294 13 1 5.5303 3.5559 -2.9576 14 6 5.5256 5.0515 -1.4001 15 7 4.1462 5.3802 -1.7679 16 6 3.5532 6.5070 -1.2642 17 1 4.1024 7.1533 -0.5955 18 6 2.2464 6.8188 -1.6132 19 7 1.5772 6.0315 -2.4285 20 14 1.4372 8.3557 -0.9255 21 1 0.0507 8.4606 -1.4467 22 1 1.4036 8.2763 0.5570 23 1 2.2142 9.5516 -1.3396 24 6 3.7960 1.9204 1.5194 25 6 3.3804 0.8485 2.5317 26 6 3.6799 1.3507 3.9466 27 8 2.9921 2.5830 4.1706 28 6 3.3767 3.6354 3.2836 29 6 3.0629 3.2261 1.8422 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 6.5646 2.1806 0.5124 36 1 5.9979 0.7645 -0.4232 37 1 8.4607 1.7741 -0.9090 38 1 7.4262 1.2921 -2.2950 39 1 7.8589 3.6008 -2.8389 40 1 7.8530 4.0952 -1.1142 41 1 6.2026 5.7868 -1.8347 42 1 5.6247 5.0630 -0.3147 43 1 3.6527 4.7996 -2.3683 44 1 1.9972 5.2332 -2.7853 45 1 4.8724 2.0818 1.5805 46 1 2.3129 0.6507 2.4350 47 1 3.9401 -0.0675 2.3427 48 1 4.7529 1.5081 4.0556 49 1 3.3456 0.6104 4.6736 50 1 4.4458 3.8228 3.3838 51 1 2.8239 4.5412 3.5328 52 1 3.3959 4.0088 1.1606 53 1 1.9889 3.0781 1.7301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714344227.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:15 Heat of formation + Delta-G solvation = -133.200262 kcal Electronic energy + Delta-G solvation = -33505.726885 eV Core-core repulsion = 29376.988630 eV Total energy + Delta-G solvation = -4128.738255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72755 -40.30198 -39.08813 -37.99214 -36.55819 -35.21075 -33.32523 -32.57382 -32.22249 -31.98055 -30.20097 -28.77052 -26.46088 -25.19539 -24.72509 -24.47606 -23.67521 -23.00695 -22.02171 -21.13977 -20.04360 -19.22605 -18.24621 -17.83697 -17.62420 -17.11623 -17.05099 -16.73884 -16.50028 -15.85547 -15.72006 -15.53205 -15.28887 -15.19876 -15.04090 -14.77814 -14.67072 -14.25828 -14.04472 -13.82927 -13.49908 -13.35447 -13.27765 -13.17559 -12.92074 -12.80406 -12.57980 -12.53451 -12.38550 -12.28544 -12.19271 -12.03156 -12.00007 -11.90116 -11.72217 -11.61917 -11.25167 -11.16198 -10.93714 -10.89673 -10.62586 -10.10823 -9.57123 -8.91467 -8.29388 -5.17768 1.47867 1.61181 1.67707 1.76987 1.89761 2.72446 2.82860 2.92377 3.40030 3.49529 3.52631 3.59019 3.65677 3.71617 3.89180 3.91772 3.98012 4.06039 4.11914 4.20986 4.24115 4.26842 4.29311 4.33351 4.39625 4.40539 4.54904 4.57490 4.65665 4.68557 4.71158 4.74556 4.75967 4.79158 4.85540 4.88768 4.95210 4.96028 5.07777 5.08985 5.13004 5.18274 5.21825 5.33908 5.36931 5.50145 5.59283 6.18223 6.23340 6.61310 6.65762 7.19780 7.47713 8.23778 8.33295 9.23631 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007894 B = 0.005418 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.130972 B = 5166.609418 C = 6338.072709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.387 6.387 4 C 0.095 3.905 5 H 0.117 0.883 6 C 0.500 3.500 7 O -0.536 6.536 8 N -0.616 5.616 9 C 0.087 3.913 10 C -0.116 4.116 11 C -0.114 4.114 12 C 0.131 3.869 13 H 0.041 0.959 14 C 0.151 3.849 15 N -0.746 5.746 16 C -0.331 4.331 17 H 0.054 0.946 18 C -0.106 4.106 19 N -0.971 5.971 20 Si 1.123 2.877 21 H -0.293 1.293 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.086 4.086 25 C -0.144 4.144 26 C 0.056 3.944 27 O -0.401 6.401 28 C 0.074 3.926 29 C -0.136 4.136 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.011 0.989 43 H 0.372 0.628 44 H 0.246 0.754 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.112 0.888 48 H 0.068 0.932 49 H 0.116 0.884 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.031 0.969 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.424 -20.267 11.468 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.305 6.305 4 C 0.034 3.966 5 H 0.135 0.865 6 C 0.288 3.712 7 O -0.410 6.410 8 N -0.353 5.353 9 C -0.034 4.034 10 C -0.153 4.153 11 C -0.153 4.153 12 C 0.026 3.974 13 H 0.059 0.941 14 C 0.023 3.977 15 N -0.395 5.395 16 C -0.463 4.463 17 H 0.072 0.928 18 C -0.298 4.298 19 N -0.619 5.619 20 Si 0.948 3.052 21 H -0.219 1.219 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.104 4.104 25 C -0.182 4.182 26 C -0.020 4.020 27 O -0.320 6.320 28 C -0.003 4.003 29 C -0.174 4.174 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.209 0.791 44 H 0.056 0.944 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.131 0.869 48 H 0.087 0.913 49 H 0.134 0.866 50 H 0.083 0.917 51 H 0.099 0.901 52 H 0.050 0.950 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.359 -18.724 11.421 25.175 hybrid contribution 0.879 -0.489 -1.018 1.431 sum 13.238 -19.214 10.403 25.547 Atomic orbital electron populations 1.21755 0.93726 1.03430 1.01803 1.22915 0.96120 0.82576 1.01375 1.88151 1.19689 1.28353 1.94335 1.21914 0.83380 0.97996 0.93344 0.86542 1.21048 0.81420 0.84708 0.84008 1.90759 1.55453 1.46435 1.48401 1.48569 1.04747 1.33363 1.48636 1.22747 0.87157 0.95810 0.97679 1.22784 0.98382 0.94630 0.99554 1.22619 0.89917 0.98769 1.03966 1.21820 0.95368 0.87010 0.93163 0.94128 1.21116 0.86152 0.94220 0.96227 1.42924 1.11556 1.27575 1.57470 1.20246 0.98706 1.01986 1.25336 0.92843 1.27104 0.94868 1.07360 1.00483 1.70830 1.39773 1.15626 1.35656 0.82730 0.75101 0.72157 0.75178 1.21939 1.20974 1.19882 1.21545 1.00794 0.95423 0.92678 1.22316 1.02909 0.98396 0.94549 1.22831 0.97279 0.85599 0.96336 1.87903 1.66306 1.21459 1.56369 1.22418 0.99993 0.90201 0.87705 1.21903 1.00564 0.97634 0.97308 0.92775 0.94305 0.87834 0.92851 0.90080 0.90204 0.88374 0.86229 0.90033 0.88794 0.89490 0.96395 0.97066 0.79053 0.94387 0.88190 0.91697 0.86933 0.91331 0.86584 0.91721 0.90087 0.95003 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 10.28 71.98 0.74 -2.92 16 2 C 0.05 1.12 5.95 71.98 0.43 1.54 16 3 O -0.39 -13.81 8.27 -130.06 -1.08 -14.89 16 4 C 0.09 2.80 1.75 29.85 0.05 2.86 16 5 H 0.12 2.36 6.92 -2.39 -0.02 2.34 16 6 C 0.50 19.79 5.93 87.66 0.52 20.31 16 7 O -0.54 -29.36 13.08 15.88 0.21 -29.15 16 8 N -0.62 -19.25 3.06 -788.06 -2.42 -21.67 16 9 C 0.09 1.50 5.72 86.86 0.50 2.00 16 10 C -0.12 -1.52 7.09 31.99 0.23 -1.30 16 11 C -0.11 -2.36 6.44 31.78 0.20 -2.15 16 12 C 0.13 4.49 3.03 45.34 0.14 4.62 16 13 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 14 C 0.15 6.79 5.61 86.38 0.48 7.27 16 15 N -0.75 -43.81 4.38 -343.46 -1.50 -45.32 16 16 C -0.33 -21.24 9.99 84.03 0.84 -20.40 16 17 H 0.05 3.34 7.83 -2.91 -0.02 3.31 16 18 C -0.11 -7.03 5.50 84.86 0.47 -6.56 16 19 N -0.97 -69.94 13.70 21.65 0.30 -69.65 16 20 Si 1.12 58.90 29.92 68.60 2.05 60.95 16 21 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 22 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 24 C -0.09 -2.19 2.03 -10.67 -0.02 -2.21 16 25 C -0.14 -2.58 4.69 30.69 0.14 -2.44 16 26 C 0.06 0.97 6.84 72.02 0.49 1.47 16 27 O -0.40 -10.95 10.77 -148.98 -1.60 -12.56 16 28 C 0.07 2.22 6.84 72.01 0.49 2.71 16 29 C -0.14 -4.96 5.03 30.68 0.15 -4.80 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.40 6.39 -2.39 -0.02 1.39 16 35 H 0.08 1.18 7.13 -2.38 -0.02 1.17 16 36 H 0.10 1.15 7.29 -2.39 -0.02 1.13 16 37 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16 41 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.37 23.70 3.96 -92.70 -0.37 23.34 16 44 H 0.25 18.31 6.70 -92.71 -0.62 17.69 16 45 H 0.10 2.14 6.05 -2.38 -0.01 2.12 16 46 H 0.06 1.40 6.38 -2.39 -0.02 1.38 16 47 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 52 H 0.03 1.49 7.48 -2.38 -0.02 1.47 16 53 H 0.04 1.93 7.48 -2.39 -0.02 1.92 16 Total: -1.00 -96.86 400.71 2.48 -94.38 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: 0.67 Total: 37.90 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 5.86 Total: 0.00 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -3.62 Total: -136.63 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.47 Total: -56.60 kcal Atomic # 14 Polarization: 58.90 SS G_CDS: 2.05 Total: 60.95 kcal Total: -96.86 2.48 -94.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714344227.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.823 kcal (2) G-P(sol) polarization free energy of solvation -96.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds