Wall clock time and date at job start Sat Apr 11 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47240 * 2 1 4 4 C 1.42898 * 113.99997 * 184.39619 * 3 2 1 5 5 H 1.09004 * 109.47526 * 8.65231 * 4 3 2 6 6 C 1.50700 * 109.47195 * 128.65211 * 4 3 2 7 7 O 1.21286 * 119.99648 * 3.48789 * 6 4 3 8 8 N 1.34777 * 120.00266 * 183.49629 * 6 4 3 9 9 C 1.46499 * 119.99989 * 174.63760 * 8 6 4 10 10 C 1.53003 * 109.46915 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.88277 * 54.30223 * 10 9 8 12 12 C 1.55155 * 111.00418 * 178.17928 * 10 9 8 13 13 C 1.54317 * 102.94451 * 153.61540 * 12 10 9 14 14 N 1.47029 * 107.27138 * 337.80980 * 13 12 10 15 15 C 1.36930 * 125.64825 * 178.98738 * 14 13 12 16 16 H 1.08001 * 119.99959 * 179.97438 * 15 14 13 17 17 C 1.38808 * 120.00200 * 359.96992 * 15 14 13 18 18 N 1.31626 * 120.00175 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00261 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46752 * 60.00312 * 19 17 15 21 21 H 1.48494 * 109.47461 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47239 * 300.00512 * 19 17 15 23 23 C 1.47426 * 108.70042 * 358.93588 * 14 13 12 24 24 C 1.52998 * 109.47385 * 248.64927 * 4 3 2 25 25 C 1.53187 * 109.54177 * 61.27823 * 24 4 3 26 26 C 1.53101 * 109.15755 * 183.24290 * 25 24 4 27 27 O 1.42906 * 109.48814 * 57.47290 * 26 25 24 28 28 C 1.42909 * 114.09642 * 298.88797 * 27 26 25 29 29 C 1.53096 * 109.41488 * 61.16098 * 28 27 26 30 30 H 1.09002 * 109.46637 * 299.99552 * 1 2 3 31 31 H 1.09004 * 109.46978 * 59.99478 * 1 2 3 32 32 H 1.08995 * 109.47256 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46637 * 240.00447 * 2 1 3 34 34 H 1.08997 * 109.47353 * 120.00582 * 2 1 3 35 35 H 0.97002 * 119.99554 * 354.63255 * 8 6 4 36 36 H 1.08999 * 109.47259 * 59.99793 * 9 8 6 37 37 H 1.09001 * 109.47388 * 299.99490 * 9 8 6 38 38 H 1.09001 * 110.72270 * 271.97938 * 12 10 9 39 39 H 1.09005 * 110.72165 * 35.07100 * 12 10 9 40 40 H 1.09001 * 109.88125 * 97.22389 * 13 12 10 41 41 H 1.08998 * 109.88536 * 218.39197 * 13 12 10 42 42 H 0.96992 * 119.99870 * 179.97438 * 18 17 15 43 43 H 1.08992 * 110.36771 * 265.29211 * 23 14 13 44 44 H 1.08999 * 110.36121 * 142.96434 * 23 14 13 45 45 H 1.08993 * 109.54824 * 181.45376 * 24 4 3 46 46 H 1.09003 * 109.51781 * 303.05850 * 25 24 4 47 47 H 1.08998 * 109.51885 * 63.24467 * 25 24 4 48 48 H 1.09004 * 109.40840 * 297.49385 * 26 25 24 49 49 H 1.09000 * 109.48441 * 177.50075 * 26 25 24 50 50 H 1.08996 * 109.48457 * 301.17708 * 28 27 26 51 51 H 1.09001 * 109.48962 * 181.14632 * 28 27 26 52 52 H 1.08993 * 109.52335 * 182.48400 * 29 28 27 53 53 H 1.08994 * 109.57551 * 62.32106 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4273 1.4613 -0.1001 5 1 3.8565 0.4819 -0.3113 6 6 3.7775 2.4141 -1.2139 7 8 2.8979 2.9917 -1.8168 8 7 5.0682 2.6241 -1.5401 9 6 5.4051 3.4576 -2.6969 10 6 6.9260 3.5340 -2.8448 11 1 7.3625 2.5363 -2.8910 12 6 7.3224 4.3726 -4.0886 13 6 8.7219 4.9048 -3.7150 14 7 8.8264 4.8666 -2.2489 15 6 9.9223 5.2384 -1.5170 16 1 9.8993 5.1734 -0.4392 17 6 11.0630 5.6987 -2.1603 18 7 11.0910 5.7784 -3.4739 19 14 12.5579 6.2066 -1.1618 20 1 13.0378 5.0487 -0.3654 21 1 13.6358 6.6569 -2.0785 22 1 12.1886 7.3171 -0.2477 23 6 7.5553 4.3630 -1.6974 24 6 3.9907 1.9910 1.2201 25 6 3.6631 1.0079 2.3482 26 6 4.1592 1.5844 3.6769 27 8 3.5561 2.8610 3.8976 28 6 3.8679 3.8341 2.8987 29 6 3.3580 3.3492 1.5390 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.7741 2.2235 -1.0089 36 1 5.0037 4.4605 -2.5514 37 1 4.9737 3.0207 -3.5975 38 1 7.3736 3.7437 -4.9774 39 1 6.6219 5.1941 -4.2391 40 1 9.4900 4.2708 -4.1580 41 1 8.8352 5.9297 -4.0682 42 1 11.8879 6.1004 -3.9233 43 1 6.9033 5.1936 -1.4277 44 1 7.7427 3.7295 -0.8304 45 1 5.0716 2.1030 1.1365 46 1 2.5847 0.8570 2.3981 47 1 4.1566 0.0553 2.1559 48 1 5.2430 1.6957 3.6413 49 1 3.8895 0.9096 4.4894 50 1 4.9478 3.9749 2.8528 51 1 3.3884 4.7801 3.1503 52 1 3.6337 4.0692 0.7686 53 1 2.2733 3.2471 1.5710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714632118.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:39 Heat of formation + Delta-G solvation = -139.852707 kcal Electronic energy + Delta-G solvation = -31272.511681 eV Core-core repulsion = 27143.484954 eV Total energy + Delta-G solvation = -4129.026727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52346 -40.05744 -39.29988 -38.51443 -36.05330 -35.19314 -34.22712 -32.18641 -31.95354 -31.67134 -30.18141 -28.77797 -27.15781 -25.42579 -24.68464 -24.27192 -23.55759 -22.12342 -21.59270 -21.18702 -20.83486 -18.91040 -18.29683 -17.94753 -17.51685 -17.04946 -16.89300 -16.65600 -16.41825 -16.22427 -15.81640 -15.68769 -15.59911 -15.23113 -14.94320 -14.72100 -14.59257 -14.03447 -13.93345 -13.80055 -13.47513 -13.27307 -13.24281 -13.15677 -13.00844 -12.78051 -12.70703 -12.60674 -12.29110 -12.21988 -12.07003 -11.99844 -11.89997 -11.84445 -11.70751 -11.53880 -11.45644 -11.23217 -11.04968 -10.69224 -10.64101 -10.20098 -10.06080 -8.89052 -7.84189 -5.19642 1.46294 1.49336 1.55544 1.55992 1.92461 2.50185 2.86447 2.98727 3.34127 3.50507 3.57416 3.61473 3.74808 3.83553 3.97278 4.02307 4.03351 4.05464 4.12484 4.19267 4.34074 4.35327 4.45010 4.45696 4.49943 4.59990 4.61918 4.69229 4.71037 4.73253 4.80652 4.81809 4.85195 4.90973 4.92339 5.04090 5.05965 5.08096 5.13109 5.16235 5.27718 5.34788 5.39400 5.46384 5.47301 5.68184 5.78671 6.12816 6.20900 6.28564 6.56184 7.11131 7.22343 7.79204 8.43546 9.26225 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.002732 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.541424 B =10246.591091 C =11877.937142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.376 6.376 4 C 0.085 3.915 5 H 0.121 0.879 6 C 0.504 3.496 7 O -0.571 6.571 8 N -0.714 5.714 9 C 0.145 3.855 10 C -0.094 4.094 11 H 0.093 0.907 12 C -0.124 4.124 13 C 0.183 3.817 14 N -0.628 5.628 15 C -0.241 4.241 16 H 0.084 0.916 17 C -0.068 4.068 18 N -0.953 5.953 19 Si 0.977 3.023 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.279 1.279 23 C 0.139 3.861 24 C -0.095 4.095 25 C -0.143 4.143 26 C 0.054 3.946 27 O -0.403 6.403 28 C 0.062 3.938 29 C -0.141 4.141 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.014 0.986 41 H 0.002 0.998 42 H 0.246 0.754 43 H 0.015 0.985 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.060 0.940 49 H 0.109 0.891 50 H 0.058 0.942 51 H 0.094 0.906 52 H 0.054 0.946 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 -16.184 10.739 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.294 6.294 4 C 0.024 3.976 5 H 0.138 0.862 6 C 0.291 3.709 7 O -0.450 6.450 8 N -0.367 5.367 9 C 0.021 3.979 10 C -0.114 4.114 11 H 0.112 0.888 12 C -0.163 4.163 13 C 0.058 3.942 14 N -0.355 5.355 15 C -0.370 4.370 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.602 5.602 19 Si 0.806 3.194 20 H -0.199 1.199 21 H -0.223 1.223 22 H -0.205 1.205 23 C 0.014 3.986 24 C -0.114 4.114 25 C -0.180 4.180 26 C -0.023 4.023 27 O -0.323 6.323 28 C -0.014 4.014 29 C -0.179 4.179 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.032 0.968 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.120 0.880 48 H 0.078 0.922 49 H 0.127 0.873 50 H 0.076 0.924 51 H 0.112 0.888 52 H 0.073 0.927 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.254 -15.514 10.437 26.130 hybrid contribution 1.633 0.562 -0.140 1.733 sum -16.620 -14.952 10.296 24.613 Atomic orbital electron populations 1.21750 0.93371 1.03314 1.02290 1.22899 0.96265 0.82578 1.01307 1.88034 1.19184 1.28206 1.93996 1.22018 0.84009 0.99063 0.92547 0.86181 1.21257 0.82364 0.82775 0.84532 1.90697 1.48910 1.50294 1.55063 1.45930 1.07288 1.51997 1.31526 1.21134 0.93473 0.94775 0.88486 1.22417 0.93307 0.99744 0.95900 0.88827 1.22722 0.96527 0.99356 0.97657 1.20906 0.92765 0.96769 0.83732 1.44798 1.11602 1.76427 1.02650 1.19432 0.91014 1.35758 0.90799 0.89777 1.25662 1.01210 1.02399 0.96858 1.70186 1.28675 1.53490 1.07856 0.85168 0.78710 0.78305 0.77255 1.19927 1.22305 1.20511 1.21737 0.86457 0.94839 0.95528 1.21617 1.00665 0.95765 0.93370 1.22228 1.02925 0.99026 0.93855 1.22778 0.97337 0.84368 0.97773 1.87907 1.73813 1.22186 1.48352 1.22587 0.99916 0.91886 0.87044 1.22039 1.01466 0.96816 0.97573 0.92299 0.93363 0.88792 0.92730 0.90873 0.75013 0.92760 0.90849 0.89591 0.91374 0.96815 0.98008 0.94486 0.96719 0.93015 0.88246 0.91020 0.88011 0.92213 0.87314 0.92420 0.88827 0.92724 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.64 6.05 71.98 0.44 1.08 16 3 O -0.38 -8.02 8.17 -129.97 -1.06 -9.09 16 4 C 0.09 1.51 2.39 29.85 0.07 1.58 16 5 H 0.12 1.35 7.59 -2.39 -0.02 1.33 16 6 C 0.50 12.53 6.07 87.66 0.53 13.07 16 7 O -0.57 -19.84 16.51 15.97 0.26 -19.58 16 8 N -0.71 -15.49 5.39 -463.05 -2.50 -17.98 16 9 C 0.15 3.77 5.13 86.38 0.44 4.21 16 10 C -0.09 -2.79 3.07 -9.40 -0.03 -2.82 16 11 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 12 C -0.12 -4.28 6.42 31.78 0.20 -4.08 16 13 C 0.18 8.91 5.37 86.73 0.47 9.38 16 14 N -0.63 -31.37 3.39 -692.00 -2.35 -33.72 16 15 C -0.24 -13.23 10.28 84.03 0.86 -12.37 16 16 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 18 N -0.95 -57.27 10.31 21.65 0.22 -57.05 16 19 Si 0.98 45.23 29.55 68.60 2.03 47.25 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 C 0.14 5.20 6.56 86.85 0.57 5.77 16 24 C -0.10 -1.49 2.08 -10.67 -0.02 -1.51 16 25 C -0.14 -1.70 4.89 30.69 0.15 -1.55 16 26 C 0.05 0.73 6.84 72.02 0.49 1.22 16 27 O -0.40 -8.26 10.77 -148.98 -1.60 -9.86 16 28 C 0.06 1.22 6.84 72.01 0.49 1.71 16 29 C -0.14 -2.96 5.02 30.69 0.15 -2.81 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 34 H 0.07 0.70 7.06 -2.39 -0.02 0.68 16 35 H 0.41 6.88 7.91 -92.71 -0.73 6.15 16 36 H 0.05 1.61 8.04 -2.39 -0.02 1.59 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.07 2.26 8.04 -2.38 -0.02 2.24 16 40 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 41 H 0.00 0.09 7.50 -2.39 -0.02 0.07 16 42 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.02 0.58 7.96 -2.39 -0.02 0.56 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 45 H 0.10 1.30 7.62 -2.39 -0.02 1.28 16 46 H 0.07 1.01 6.74 -2.39 -0.02 0.99 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.05 1.34 7.39 -2.39 -0.02 1.33 16 53 H 0.06 1.59 7.55 -2.39 -0.02 1.57 16 Total: -1.00 -75.86 410.93 1.18 -74.69 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.14 Total: 17.16 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.03 Total: 8.18 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.62 Total: -108.75 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -2.40 Total: -38.53 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -75.86 1.18 -74.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714632118.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.168 kcal (2) G-P(sol) polarization free energy of solvation -75.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds