Wall clock time and date at job start Sat Apr 11 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47131 * 2 1 4 4 C 1.42895 * 113.99832 * 179.55377 * 3 2 1 5 5 H 1.08994 * 109.47595 * 11.22026 * 4 3 2 6 6 C 1.50705 * 109.47107 * 131.22192 * 4 3 2 7 7 O 1.21280 * 119.99731 * 11.35501 * 6 4 3 8 8 N 1.34775 * 119.99736 * 191.35750 * 6 4 3 9 9 C 1.46493 * 120.00343 * 355.34295 * 8 6 4 10 10 C 1.46499 * 119.99916 * 175.34286 * 8 6 4 11 11 H 1.09007 * 110.63933 * 358.30917 * 10 8 6 12 12 C 1.55158 * 110.87574 * 235.06764 * 10 8 6 13 13 C 1.55122 * 101.48579 * 205.89636 * 12 10 8 14 14 N 1.47425 * 104.72783 * 37.29195 * 13 12 10 15 15 C 1.36934 * 125.65190 * 155.81365 * 14 13 12 16 16 H 1.07996 * 119.99946 * 199.78949 * 15 14 13 17 17 C 1.38809 * 120.00028 * 19.79543 * 15 14 13 18 18 N 1.31616 * 120.00113 * 29.42540 * 17 15 14 19 19 Si 1.86798 * 119.99922 * 209.43094 * 17 15 14 20 20 H 1.48506 * 109.47054 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.46999 * 299.99430 * 19 17 15 22 22 H 1.48499 * 109.47329 * 59.99856 * 19 17 15 23 23 C 1.47023 * 108.69884 * 335.55454 * 14 13 12 24 24 C 1.53007 * 109.47042 * 251.21940 * 4 3 2 25 25 C 1.53178 * 109.54404 * 64.27649 * 24 4 3 26 26 C 1.53089 * 109.16302 * 183.15261 * 25 24 4 27 27 O 1.42901 * 109.41335 * 57.60965 * 26 25 24 28 28 C 1.42903 * 114.10035 * 298.84037 * 27 26 25 29 29 C 1.53089 * 109.41370 * 61.16063 * 28 27 26 30 30 H 1.08994 * 109.47329 * 300.00166 * 1 2 3 31 31 H 1.09002 * 109.46901 * 59.99912 * 1 2 3 32 32 H 1.09006 * 109.46859 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46767 * 240.00006 * 2 1 3 34 34 H 1.08994 * 109.47131 * 120.00282 * 2 1 3 35 35 H 1.08998 * 109.47141 * 275.15304 * 9 8 6 36 36 H 1.09003 * 109.47223 * 35.15415 * 9 8 6 37 37 H 1.08996 * 109.47419 * 155.15317 * 9 8 6 38 38 H 1.09006 * 110.99843 * 324.13414 * 12 10 8 39 39 H 1.08997 * 111.00739 * 87.98304 * 12 10 8 40 40 H 1.09003 * 110.49861 * 278.44963 * 13 12 10 41 41 H 1.08998 * 110.34325 * 156.05785 * 13 12 10 42 42 H 0.97005 * 120.00132 * 6.38178 * 18 17 15 43 43 H 1.09000 * 109.88689 * 120.69955 * 23 14 13 44 44 H 1.09005 * 109.88078 * 241.71424 * 23 14 13 45 45 H 1.09001 * 109.54499 * 184.54474 * 24 4 3 46 46 H 1.09005 * 109.52192 * 303.05995 * 25 24 4 47 47 H 1.09000 * 109.51689 * 63.24550 * 25 24 4 48 48 H 1.08998 * 109.48250 * 297.62572 * 26 25 24 49 49 H 1.09005 * 109.48864 * 177.59798 * 26 25 24 50 50 H 1.09001 * 109.47743 * 301.17610 * 28 27 26 51 51 H 1.08994 * 109.49236 * 181.14768 * 28 27 26 52 52 H 1.09001 * 109.52356 * 182.48770 * 29 28 27 53 53 H 1.08997 * 109.57515 * 62.33026 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0102 5 1 3.8741 0.4834 -0.1840 6 6 3.8656 2.4303 -1.0579 7 8 3.0434 3.1243 -1.6177 8 7 5.1679 2.5267 -1.3910 9 6 6.1729 1.7643 -0.6462 10 6 5.5786 3.3940 -2.4980 11 1 4.7104 3.8627 -2.9613 12 6 6.3989 2.5991 -3.5481 13 6 7.2565 3.7235 -4.1857 14 7 7.5973 4.6170 -3.0636 15 6 8.6777 5.4566 -3.0116 16 1 9.0289 5.8263 -2.0596 17 6 9.3216 5.8325 -4.1824 18 7 8.6470 5.9049 -5.3103 19 14 11.1454 6.2356 -4.1574 20 1 11.5894 6.6052 -5.5255 21 1 11.3884 7.3725 -3.2336 22 1 11.9083 5.0490 -3.6936 23 6 6.5813 4.4617 -2.0122 24 6 3.8925 1.9668 1.3780 25 6 3.5457 0.9312 2.4520 26 6 3.9397 1.4804 3.8256 27 8 3.2656 2.7198 4.0528 28 6 3.5878 3.7412 3.1067 29 6 3.1796 3.2828 1.7043 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 6.4648 2.3210 0.2444 36 1 5.7544 0.8018 -0.3521 37 1 7.0473 1.6030 -1.2766 38 1 7.0270 1.8492 -3.0670 39 1 5.7446 2.1410 -4.2897 40 1 6.6809 4.2624 -4.9383 41 1 8.1617 3.3060 -4.6264 42 1 7.6843 5.7864 -5.3081 43 1 7.0532 4.1329 -1.0863 44 1 6.0678 5.4095 -1.8502 45 1 4.9701 2.1302 1.3617 46 1 2.4742 0.7317 2.4331 47 1 4.0924 0.0084 2.2581 48 1 5.0172 1.6415 3.8573 49 1 3.6562 0.7654 4.5981 50 1 4.6608 3.9319 3.1290 51 1 3.0509 4.6550 3.3611 52 1 3.4646 4.0418 0.9757 53 1 2.1008 3.1312 1.6692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715026179.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:50 Heat of formation + Delta-G solvation = -124.581479 kcal Electronic energy + Delta-G solvation = -32144.652959 eV Core-core repulsion = 28016.288442 eV Total energy + Delta-G solvation = -4128.364517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85159 -40.30634 -39.31137 -38.45953 -36.53016 -35.21037 -34.12343 -32.21800 -31.97775 -31.13560 -29.91394 -28.55183 -27.77567 -26.26765 -24.82590 -24.56264 -23.61490 -22.27809 -22.05331 -21.13950 -20.24107 -19.58770 -18.53226 -17.90304 -17.56794 -17.28965 -16.88486 -16.53814 -16.27865 -16.13797 -15.76303 -15.69608 -15.56113 -15.31611 -15.15816 -14.79465 -14.72882 -14.31981 -14.03162 -13.84030 -13.50760 -13.41143 -13.26551 -13.21423 -13.13716 -12.79261 -12.66103 -12.57523 -12.54046 -12.46893 -12.28245 -12.20284 -11.96125 -11.90250 -11.78106 -11.72333 -11.62741 -11.22785 -11.04331 -10.68600 -10.54623 -10.20984 -9.75120 -9.07975 -8.36807 -5.41328 1.43789 1.57468 1.62673 1.66168 1.85044 2.62440 2.74283 2.96437 3.13437 3.28190 3.50567 3.52356 3.63736 3.65083 3.79562 3.89703 3.94754 4.05156 4.09121 4.16623 4.18388 4.29402 4.30792 4.31750 4.37979 4.43421 4.46650 4.55205 4.58318 4.65979 4.69316 4.73533 4.78155 4.80331 4.83266 4.88753 4.92087 4.94007 4.98736 5.01369 5.11217 5.14208 5.18125 5.25212 5.37238 5.41688 5.65112 6.06753 6.25660 6.26578 6.35274 6.82648 7.05724 7.64290 8.22640 8.92669 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015733 B = 0.002880 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.317526 B = 9719.978623 C =10793.616998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.379 6.379 4 C 0.092 3.908 5 H 0.122 0.878 6 C 0.502 3.498 7 O -0.574 6.574 8 N -0.596 5.596 9 C 0.062 3.938 10 C 0.142 3.858 11 H 0.077 0.923 12 C -0.121 4.121 13 C 0.148 3.852 14 N -0.618 5.618 15 C -0.350 4.350 16 H 0.060 0.940 17 C -0.076 4.076 18 N -0.939 5.939 19 Si 1.118 2.882 20 H -0.292 1.292 21 H -0.275 1.275 22 H -0.274 1.274 23 C 0.131 3.869 24 C -0.099 4.099 25 C -0.143 4.143 26 C 0.054 3.946 27 O -0.402 6.402 28 C 0.066 3.934 29 C -0.141 4.141 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.000 1.000 41 H 0.033 0.967 42 H 0.252 0.748 43 H 0.047 0.953 44 H -0.002 1.002 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.112 0.888 50 H 0.058 0.942 51 H 0.093 0.907 52 H 0.044 0.956 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 -19.310 18.468 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.297 6.297 4 C 0.031 3.969 5 H 0.139 0.861 6 C 0.291 3.709 7 O -0.453 6.453 8 N -0.329 5.329 9 C -0.079 4.079 10 C 0.037 3.963 11 H 0.095 0.905 12 C -0.160 4.160 13 C 0.022 3.978 14 N -0.346 5.346 15 C -0.479 4.479 16 H 0.078 0.922 17 C -0.272 4.272 18 N -0.580 5.580 19 Si 0.942 3.058 20 H -0.218 1.218 21 H -0.201 1.201 22 H -0.200 1.200 23 C 0.005 3.995 24 C -0.118 4.118 25 C -0.180 4.180 26 C -0.022 4.022 27 O -0.321 6.321 28 C -0.011 4.011 29 C -0.179 4.179 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.018 0.982 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.016 0.984 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.081 0.919 49 H 0.130 0.870 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.063 0.937 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.382 -18.319 17.428 26.970 hybrid contribution -1.317 0.408 0.002 1.379 sum -10.699 -17.911 17.430 27.186 Atomic orbital electron populations 1.21751 0.93295 1.03410 1.02247 1.22933 0.96324 0.82448 1.01454 1.88049 1.18690 1.28388 1.94610 1.21966 0.83799 0.98510 0.92661 0.86053 1.21480 0.81628 0.84023 0.83737 1.90686 1.53025 1.45937 1.55610 1.47811 1.06881 1.45046 1.33210 1.22248 0.92372 0.96537 0.96738 1.21701 0.96262 0.90840 0.87452 0.90522 1.23075 0.98026 0.97165 0.97719 1.21458 0.96141 0.89908 0.90305 1.44777 1.26570 1.45731 1.17475 1.19974 1.06074 1.27060 0.94749 0.92229 1.27291 1.09904 0.97923 0.92075 1.70907 1.08699 1.48538 1.29892 0.82836 0.70500 0.76968 0.75536 1.21843 1.20115 1.20014 1.21614 0.89564 0.95259 0.93031 1.21703 1.01253 0.96114 0.92721 1.22262 1.03229 0.98577 0.93942 1.22798 0.96881 0.85404 0.97104 1.87908 1.69503 1.22580 1.52119 1.22543 1.00223 0.90966 0.87383 1.22019 1.01499 0.97082 0.97341 0.92245 0.93553 0.88574 0.92820 0.90430 0.91159 0.87491 0.90056 0.88488 0.89669 0.98184 0.94891 0.93798 0.93549 0.98381 0.88043 0.91018 0.87523 0.91932 0.87016 0.92356 0.88904 0.93745 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.04 0.66 6.00 71.98 0.43 1.10 16 3 O -0.38 -8.85 8.21 -130.19 -1.07 -9.92 16 4 C 0.09 1.83 1.55 29.85 0.05 1.87 16 5 H 0.12 1.51 6.44 -2.39 -0.02 1.50 16 6 C 0.50 14.86 6.07 87.66 0.53 15.40 16 7 O -0.57 -23.23 15.92 15.76 0.25 -22.98 16 8 N -0.60 -16.43 2.89 -815.97 -2.35 -18.79 16 9 C 0.06 1.11 7.84 127.77 1.00 2.11 16 10 C 0.14 5.17 3.34 46.18 0.15 5.33 16 11 H 0.08 3.24 7.01 -2.38 -0.02 3.22 16 12 C -0.12 -4.17 6.61 32.06 0.21 -3.96 16 13 C 0.15 6.97 5.44 86.93 0.47 7.44 16 14 N -0.62 -31.93 3.25 -691.56 -2.25 -34.18 16 15 C -0.35 -20.03 9.98 84.03 0.84 -19.19 16 16 H 0.06 3.38 7.98 -2.91 -0.02 3.36 16 17 C -0.08 -4.36 5.08 84.86 0.43 -3.93 16 18 N -0.94 -58.56 12.99 21.65 0.28 -58.28 16 19 Si 1.12 50.78 30.01 68.60 2.06 52.84 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.13 5.69 6.88 86.73 0.60 6.28 16 24 C -0.10 -1.66 1.94 -10.67 -0.02 -1.68 16 25 C -0.14 -1.59 4.84 30.68 0.15 -1.45 16 26 C 0.05 0.67 6.84 72.01 0.49 1.16 16 27 O -0.40 -7.94 10.77 -148.98 -1.60 -9.54 16 28 C 0.07 1.29 6.84 72.01 0.49 1.79 16 29 C -0.14 -3.24 5.03 30.69 0.15 -3.08 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.74 6.75 -2.39 -0.02 0.73 16 35 H 0.07 1.15 6.88 -2.39 -0.02 1.13 16 36 H 0.11 1.03 6.28 -2.39 -0.01 1.02 16 37 H 0.08 1.57 6.14 -2.39 -0.01 1.55 16 38 H 0.10 2.85 6.16 -2.38 -0.01 2.84 16 39 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.00 0.02 6.85 -2.39 -0.02 0.00 16 41 H 0.03 1.66 8.08 -2.39 -0.02 1.64 16 42 H 0.25 16.19 6.35 -92.70 -0.59 15.60 16 43 H 0.05 1.84 7.06 -2.39 -0.02 1.83 16 44 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 45 H 0.10 1.47 5.51 -2.39 -0.01 1.45 16 46 H 0.07 0.96 6.57 -2.38 -0.02 0.95 16 47 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.04 1.26 7.49 -2.39 -0.02 1.24 16 53 H 0.06 1.71 7.47 -2.39 -0.02 1.69 16 Total: -1.00 -80.38 398.53 3.11 -77.28 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.07 Total: 15.81 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.73 Total: 7.76 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -4.32 Total: -111.24 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.42 Total: -42.44 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.84 kcal Total: -80.38 3.11 -77.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715026179.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.306 kcal (2) G-P(sol) polarization free energy of solvation -80.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds