Wall clock time and date at job start Sat Apr 11 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47120 * 2 1 4 4 C 1.42899 * 113.99965 * 174.30621 * 3 2 1 5 5 H 1.08998 * 109.47563 * 3.39483 * 4 3 2 6 6 C 1.50705 * 109.47232 * 123.40025 * 4 3 2 7 7 O 1.21280 * 119.99690 * 20.11755 * 6 4 3 8 8 N 1.34777 * 119.99899 * 200.39932 * 6 4 3 9 9 C 1.46499 * 120.00056 * 355.30336 * 8 6 4 10 10 C 1.46496 * 119.99828 * 175.30550 * 8 6 4 11 11 H 1.08997 * 110.89099 * 359.29571 * 10 8 6 12 12 C 1.55154 * 111.00472 * 123.18195 * 10 8 6 13 13 C 1.54325 * 102.94604 * 153.57547 * 12 10 8 14 14 N 1.47023 * 107.26828 * 337.80453 * 13 12 10 15 15 C 1.36937 * 125.65038 * 178.97710 * 14 13 12 16 16 H 1.08000 * 120.00300 * 174.83092 * 15 14 13 17 17 C 1.38812 * 119.99869 * 354.83295 * 15 14 13 18 18 N 1.31621 * 119.99866 * 6.73158 * 17 15 14 19 19 Si 1.86800 * 120.00190 * 186.72724 * 17 15 14 20 20 H 1.48504 * 109.46965 * 94.98851 * 19 17 15 21 21 H 1.48493 * 109.47078 * 214.99001 * 19 17 15 22 22 H 1.48503 * 109.46923 * 334.99023 * 19 17 15 23 23 C 1.47473 * 108.72422 * 358.97475 * 14 13 12 24 24 C 1.52998 * 109.46875 * 243.39400 * 4 3 2 25 25 C 1.53179 * 109.54462 * 61.66173 * 24 4 3 26 26 C 1.53100 * 109.16160 * 183.24194 * 25 24 4 27 27 O 1.42898 * 109.48849 * 57.47336 * 26 25 24 28 28 C 1.42907 * 114.09900 * 298.89416 * 27 26 25 29 29 C 1.53084 * 109.41558 * 61.15446 * 28 27 26 30 30 H 1.09002 * 109.46769 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46995 * 299.99631 * 1 2 3 32 32 H 1.08994 * 109.47370 * 59.99872 * 1 2 3 33 33 H 1.09007 * 109.46995 * 240.00369 * 2 1 3 34 34 H 1.09002 * 109.47591 * 119.99890 * 2 1 3 35 35 H 1.08999 * 109.47090 * 94.20050 * 9 8 6 36 36 H 1.08994 * 109.47067 * 214.20678 * 9 8 6 37 37 H 1.09005 * 109.47132 * 334.20263 * 9 8 6 38 38 H 1.08999 * 110.71644 * 271.93614 * 12 10 8 39 39 H 1.08999 * 110.72313 * 35.03198 * 12 10 8 40 40 H 1.08997 * 109.88383 * 97.21895 * 13 12 10 41 41 H 1.08994 * 109.88063 * 218.38807 * 13 12 10 42 42 H 0.97003 * 119.99716 * 180.02562 * 18 17 15 43 43 H 1.08996 * 110.35092 * 265.25424 * 23 14 13 44 44 H 1.09003 * 110.40549 * 142.91348 * 23 14 13 45 45 H 1.09002 * 109.54505 * 181.83769 * 24 4 3 46 46 H 1.08997 * 109.52219 * 303.06191 * 25 24 4 47 47 H 1.09004 * 109.52005 * 63.24569 * 25 24 4 48 48 H 1.09009 * 109.40436 * 297.49190 * 26 25 24 49 49 H 1.08998 * 109.49772 * 177.51339 * 26 25 24 50 50 H 1.09002 * 109.47783 * 301.17604 * 28 27 26 51 51 H 1.08993 * 109.48061 * 181.13999 * 28 27 26 52 52 H 1.09003 * 109.52661 * 182.48754 * 29 28 27 53 53 H 1.08999 * 109.58007 * 62.32826 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4248 1.4623 0.1295 5 1 3.8702 0.4676 0.1433 6 6 3.9741 2.2426 -1.0369 7 8 3.2420 2.9601 -1.6851 8 7 5.2777 2.1389 -1.3630 9 6 6.1822 1.3494 -0.5235 10 6 5.7901 2.8156 -2.5570 11 1 4.9920 3.3470 -3.0752 12 6 6.9542 3.7756 -2.1957 13 6 7.7689 3.8391 -3.5048 14 7 7.4472 2.6308 -4.2782 15 6 7.9484 2.3167 -5.5132 16 1 7.7150 1.3636 -5.9643 17 6 8.7564 3.2234 -6.1855 18 7 9.1495 4.3263 -5.5842 19 14 9.2859 2.8783 -7.9433 20 1 8.3540 3.5528 -8.8824 21 1 10.6622 3.3938 -8.1559 22 1 9.2623 1.4139 -8.1889 23 6 6.4954 1.8127 -3.5039 24 6 3.7605 2.1895 1.4331 25 6 3.2390 1.3769 2.6222 26 6 3.5074 2.1505 3.9159 27 8 2.8855 3.4349 3.8411 28 6 3.3694 4.2564 2.7765 29 6 3.0935 3.5685 1.4371 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 6.2573 0.3376 -0.9217 36 1 7.1692 1.8119 -0.5179 37 1 5.7932 1.3114 0.4941 38 1 6.5727 4.7616 -1.9307 39 1 7.5549 3.3651 -1.3840 40 1 7.4905 4.7273 -4.0720 41 1 8.8347 3.8609 -3.2774 42 1 9.7139 4.9601 -6.0541 43 1 7.0275 1.0563 -2.9271 44 1 5.7696 1.3434 -4.1681 45 1 4.8409 2.3068 1.5174 46 1 2.1667 1.2161 2.5112 47 1 3.7507 0.4151 2.6585 48 1 4.5825 2.2742 4.0475 49 1 3.0991 1.5976 4.7618 50 1 4.4426 4.4076 2.8932 51 1 2.8615 5.2204 2.8016 52 1 3.5011 4.1726 0.6265 53 1 2.0183 3.4533 1.3003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715026184.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:53 Heat of formation + Delta-G solvation = -119.171461 kcal Electronic energy + Delta-G solvation = -31980.625194 eV Core-core repulsion = 27852.495273 eV Total energy + Delta-G solvation = -4128.129921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77137 -40.20619 -39.19045 -38.37065 -36.36641 -35.18155 -34.00865 -32.15195 -31.95778 -31.20260 -29.74365 -28.48620 -27.77983 -26.39899 -24.73127 -24.48164 -23.66210 -22.12091 -21.95699 -21.10400 -20.19970 -18.95882 -18.47937 -17.84328 -17.49935 -17.17274 -16.82080 -16.64592 -16.43844 -15.91263 -15.88185 -15.69282 -15.48346 -15.32981 -14.72519 -14.60784 -14.35994 -14.15247 -14.05820 -13.83947 -13.61909 -13.34646 -13.22616 -13.14305 -13.05457 -12.93937 -12.79710 -12.77386 -12.33600 -12.20955 -12.19582 -12.08001 -12.02534 -11.96734 -11.83453 -11.73060 -11.51541 -11.21335 -11.05211 -10.72534 -10.60434 -10.17935 -9.67805 -8.93236 -7.89219 -5.24696 1.43974 1.47239 1.49073 1.55488 1.73024 2.47597 2.75330 3.00788 3.30084 3.33520 3.56254 3.64451 3.70313 3.87147 3.92696 3.97051 4.00860 4.12049 4.14178 4.16442 4.20115 4.34298 4.35344 4.45430 4.48103 4.53280 4.56978 4.60644 4.65200 4.71332 4.73721 4.79529 4.82164 4.83753 4.90447 4.93394 5.01725 5.02764 5.11390 5.15518 5.20230 5.26768 5.40240 5.41580 5.51642 5.59745 5.69979 6.09188 6.15765 6.30892 6.42175 7.05829 7.13041 7.71897 8.36071 9.21410 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002694 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.240073 B =10390.166389 C =11296.805044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.377 6.377 4 C 0.090 3.910 5 H 0.118 0.882 6 C 0.499 3.501 7 O -0.574 6.574 8 N -0.597 5.597 9 C 0.057 3.943 10 C 0.139 3.861 11 H 0.072 0.928 12 C -0.133 4.133 13 C 0.188 3.812 14 N -0.625 5.625 15 C -0.246 4.246 16 H 0.083 0.917 17 C -0.063 4.063 18 N -0.948 5.948 19 Si 0.978 3.022 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.266 1.266 23 C 0.134 3.866 24 C -0.093 4.093 25 C -0.142 4.142 26 C 0.055 3.945 27 O -0.403 6.403 28 C 0.066 3.934 29 C -0.142 4.142 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.009 0.991 41 H 0.017 0.983 42 H 0.248 0.752 43 H 0.046 0.954 44 H 0.031 0.969 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.110 0.890 50 H 0.063 0.937 51 H 0.093 0.907 52 H 0.049 0.951 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -11.025 23.119 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.295 6.295 4 C 0.029 3.971 5 H 0.135 0.865 6 C 0.287 3.713 7 O -0.452 6.452 8 N -0.330 5.330 9 C -0.084 4.084 10 C 0.034 3.966 11 H 0.090 0.910 12 C -0.171 4.171 13 C 0.063 3.937 14 N -0.352 5.352 15 C -0.374 4.374 16 H 0.100 0.900 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.806 3.194 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.190 1.190 23 C 0.008 3.992 24 C -0.111 4.111 25 C -0.180 4.180 26 C -0.021 4.021 27 O -0.323 6.323 28 C -0.011 4.011 29 C -0.180 4.180 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.028 0.972 41 H 0.035 0.965 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.123 0.877 46 H 0.087 0.913 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.128 0.872 50 H 0.081 0.919 51 H 0.111 0.889 52 H 0.068 0.932 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.810 -10.379 22.756 27.659 hybrid contribution 0.720 0.250 -1.954 2.097 sum -11.090 -10.129 20.802 25.658 Atomic orbital electron populations 1.21742 0.93100 1.03393 1.02348 1.22903 0.96454 0.82549 1.01224 1.88046 1.19211 1.28221 1.94062 1.22031 0.83531 0.99954 0.91610 0.86472 1.21601 0.81494 0.82226 0.85959 1.90684 1.58811 1.40888 1.54806 1.47825 1.08578 1.50728 1.25888 1.22295 0.94866 0.95980 0.95224 1.21899 0.95311 0.93559 0.85839 0.90956 1.23035 0.96421 0.99331 0.98355 1.20875 0.95591 0.88696 0.88580 1.44670 1.50608 1.22043 1.17876 1.19431 1.24619 1.00809 0.92588 0.89952 1.25678 1.00729 0.96769 1.02418 1.70180 1.39929 1.12511 1.37013 0.85070 0.76708 0.77999 0.79625 1.21759 1.21823 1.19002 1.21849 0.91151 0.93333 0.92886 1.21623 1.01455 0.95229 0.92839 1.22222 1.02741 0.99703 0.93304 1.22785 0.98243 0.83251 0.97817 1.87910 1.65278 1.27945 1.51140 1.22567 0.99483 0.93860 0.85198 1.22032 1.01599 0.96406 0.97935 0.88719 0.91860 0.93633 0.93587 0.90240 0.90783 0.90054 0.87680 0.91197 0.88977 0.97247 0.96526 0.94257 0.93645 0.95100 0.87737 0.91271 0.87693 0.91698 0.87206 0.91917 0.88897 0.93204 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.04 0.72 6.22 71.98 0.45 1.17 16 3 O -0.38 -8.96 8.15 -130.76 -1.07 -10.03 16 4 C 0.09 1.81 1.53 29.85 0.05 1.86 16 5 H 0.12 1.56 6.80 -2.39 -0.02 1.55 16 6 C 0.50 14.86 5.90 87.66 0.52 15.37 16 7 O -0.57 -23.35 15.82 15.19 0.24 -23.11 16 8 N -0.60 -16.52 2.91 -814.83 -2.37 -18.89 16 9 C 0.06 1.00 8.76 127.77 1.12 2.11 16 10 C 0.14 5.15 3.45 46.39 0.16 5.31 16 11 H 0.07 3.19 7.02 -2.39 -0.02 3.18 16 12 C -0.13 -4.88 6.52 31.78 0.21 -4.68 16 13 C 0.19 9.36 5.38 86.73 0.47 9.82 16 14 N -0.62 -32.52 3.40 -691.86 -2.35 -34.87 16 15 C -0.25 -13.93 10.27 84.03 0.86 -13.07 16 16 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 17 C -0.06 -3.59 5.48 84.86 0.46 -3.13 16 18 N -0.95 -57.37 10.36 21.65 0.22 -57.14 16 19 Si 0.98 46.10 29.56 68.60 2.03 48.13 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 C 0.13 5.53 6.81 86.85 0.59 6.13 16 24 C -0.09 -1.49 1.83 -10.67 -0.02 -1.51 16 25 C -0.14 -1.58 5.32 30.69 0.16 -1.42 16 26 C 0.06 0.64 6.84 72.02 0.49 1.13 16 27 O -0.40 -7.64 10.77 -148.98 -1.60 -9.24 16 28 C 0.07 1.20 6.84 72.01 0.49 1.69 16 29 C -0.14 -3.11 5.02 30.68 0.15 -2.96 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 34 H 0.08 0.80 8.06 -2.39 -0.02 0.79 16 35 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 36 H 0.08 1.46 6.19 -2.39 -0.01 1.45 16 37 H 0.10 1.08 4.54 -2.38 -0.01 1.06 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 39 H 0.09 2.83 6.17 -2.39 -0.01 2.82 16 40 H 0.01 0.53 7.29 -2.39 -0.02 0.51 16 41 H 0.02 0.90 7.61 -2.39 -0.02 0.88 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 43 H 0.05 1.68 7.00 -2.39 -0.02 1.67 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.32 6.14 -2.39 -0.01 1.31 16 46 H 0.07 0.98 7.47 -2.39 -0.02 0.96 16 47 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.05 1.34 7.26 -2.39 -0.02 1.33 16 53 H 0.06 1.61 7.54 -2.39 -0.02 1.59 16 Total: -1.00 -78.54 401.47 2.89 -75.65 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.88 Total: 13.15 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.91 Total: 16.35 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.50 Total: -110.90 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -2.43 Total: -42.38 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.54 2.89 -75.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715026184.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.520 kcal (2) G-P(sol) polarization free energy of solvation -78.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds