Wall clock time and date at job start Sat Apr 11 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47199 * 2 1 4 4 C 1.42899 * 113.99962 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47012 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47356 * 182.42419 * 5 4 3 7 7 C 1.50704 * 112.84741 * 292.00846 * 6 5 4 8 8 O 1.21279 * 120.00288 * 115.53843 * 7 6 5 9 9 N 1.34774 * 119.99589 * 295.53691 * 7 6 5 10 10 C 1.46504 * 119.99886 * 175.00524 * 9 7 6 11 11 C 1.53003 * 109.47126 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.51120 * 305.10170 * 11 10 9 13 13 C 1.53299 * 109.51221 * 184.99599 * 11 10 9 14 14 N 1.47154 * 108.38433 * 187.77450 * 13 11 10 15 15 C 1.36931 * 120.98217 * 230.55866 * 14 13 11 16 16 H 1.08002 * 119.99796 * 26.22083 * 15 14 13 17 17 C 1.38812 * 120.00055 * 206.22367 * 15 14 13 18 18 N 1.31615 * 119.99911 * 16.20684 * 17 15 14 19 19 Si 1.86793 * 120.00029 * 196.20659 * 17 15 14 20 20 H 1.48503 * 109.47301 * 94.68043 * 19 17 15 21 21 H 1.48505 * 109.47324 * 214.67877 * 19 17 15 22 22 H 1.48498 * 109.47291 * 334.67774 * 19 17 15 23 23 C 1.47154 * 118.03248 * 50.53493 * 14 13 11 24 24 C 1.53292 * 108.39021 * 309.46453 * 23 14 13 25 25 O 1.42966 * 109.50848 * 65.25238 * 11 10 9 26 26 C 1.53777 * 113.61845 * 160.69743 * 6 5 4 27 27 C 1.53781 * 87.08232 * 220.01637 * 26 6 5 28 28 C 1.53783 * 113.61391 * 63.19701 * 6 5 4 29 29 H 1.08997 * 109.46860 * 60.00130 * 1 2 3 30 30 H 1.08999 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47208 * 300.00520 * 1 2 3 32 32 H 1.08993 * 109.47332 * 239.99079 * 2 1 3 33 33 H 1.09005 * 109.47283 * 119.99408 * 2 1 3 34 34 H 1.09002 * 109.47559 * 59.99763 * 4 3 2 35 35 H 1.08998 * 109.47288 * 299.99485 * 4 3 2 36 36 H 1.09008 * 109.46959 * 302.41736 * 5 4 3 37 37 H 1.08996 * 109.47691 * 62.42154 * 5 4 3 38 38 H 0.97000 * 119.99999 * 354.99610 * 9 7 6 39 39 H 1.08998 * 109.46906 * 299.99354 * 10 9 7 40 40 H 1.09001 * 109.47327 * 59.99599 * 10 9 7 41 41 H 1.08995 * 109.67974 * 307.49699 * 13 11 10 42 42 H 1.08995 * 109.68066 * 68.01390 * 13 11 10 43 43 H 0.97002 * 120.00445 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.68038 * 69.19054 * 23 14 13 45 45 H 1.08999 * 109.67814 * 189.70201 * 23 14 13 46 46 H 1.08994 * 109.51419 * 172.22931 * 24 23 14 47 47 H 1.09003 * 109.50856 * 292.38335 * 24 23 14 48 48 H 1.08996 * 113.61226 * 334.56912 * 26 6 5 49 49 H 1.09005 * 113.61430 * 105.47299 * 26 6 5 50 50 H 1.08991 * 113.61814 * 270.88395 * 27 26 6 51 51 H 1.09003 * 113.68649 * 139.98800 * 27 26 6 52 52 H 1.09000 * 113.61917 * 254.52995 * 28 6 5 53 53 H 1.08997 * 113.61473 * 25.43784 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3494 3.0595 -0.0605 7 6 6.0252 2.5738 1.1959 8 8 6.7559 1.6066 1.1563 9 7 5.8177 3.2143 2.3634 10 6 6.3856 2.6794 3.6034 11 6 6.0045 3.5892 4.7730 12 1 6.3164 4.6108 4.5561 13 6 6.7000 3.1013 6.0490 14 7 6.1745 3.8714 7.1875 15 6 7.0194 4.4798 8.0770 16 1 8.0111 4.7732 7.7657 17 6 6.6013 4.7193 9.3788 18 7 5.5448 4.0960 9.8558 19 14 7.5380 5.9263 10.4534 20 1 6.8970 7.2633 10.3710 21 1 7.5185 5.4540 11.8613 22 1 8.9432 6.0211 9.9826 23 6 4.7143 3.9689 7.3415 24 6 4.1155 4.4145 6.0026 25 8 4.5883 3.5519 4.9651 26 6 5.8396 4.4386 -0.5322 27 6 6.9174 3.6930 -1.3367 28 6 5.9622 2.4879 -1.3500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8898 33 1 1.8934 -0.5138 0.8901 34 1 3.8341 0.9764 -0.8891 35 1 3.8333 0.9767 0.8908 36 1 3.3871 3.4309 -0.8682 37 1 3.4590 3.4127 0.9103 38 1 5.2924 4.0296 2.3826 39 1 5.9943 1.6774 3.7796 40 1 7.4713 2.6354 3.5165 41 1 6.4943 2.0411 6.1967 42 1 7.7752 3.2582 5.9639 43 1 5.2523 4.2636 10.7654 44 1 4.3088 2.9961 7.6194 45 1 4.4747 4.7005 8.1131 46 1 3.0281 4.3602 6.0540 47 1 4.4200 5.4395 5.7908 48 1 5.1187 4.9687 -1.1546 49 1 6.2429 5.0565 0.2700 50 1 7.8358 3.5161 -0.7771 51 1 7.0986 4.1174 -2.3243 52 1 6.4645 1.5311 -1.2079 53 1 5.2749 2.4848 -2.1959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715279283.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:59 Heat of formation + Delta-G solvation = -95.870337 kcal Electronic energy + Delta-G solvation = -30925.412262 eV Core-core repulsion = 26798.292753 eV Total energy + Delta-G solvation = -4127.119508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95460 -38.73806 -38.15849 -37.46976 -34.92800 -34.30647 -32.71430 -31.60106 -30.82622 -30.39060 -27.70376 -26.39323 -25.73197 -24.95497 -23.23119 -22.98163 -22.58664 -21.84139 -21.31786 -19.91861 -18.93535 -17.05616 -16.95716 -16.65212 -16.38583 -16.11740 -15.95539 -15.44945 -15.07652 -14.74665 -14.69518 -14.47092 -14.36606 -14.05375 -13.81790 -13.42911 -13.21662 -12.99828 -12.80246 -12.71207 -12.69175 -12.65229 -12.39569 -12.18058 -11.67954 -11.55977 -11.34290 -11.28146 -11.14693 -11.10595 -10.89516 -10.74477 -10.54245 -10.44852 -10.43112 -10.27154 -10.01865 -9.82887 -9.75972 -9.63030 -9.09077 -8.98630 -8.57745 -6.79032 -5.87063 -3.31476 2.59429 3.13766 3.32108 3.38055 3.39408 3.40868 4.16733 4.20548 4.31469 4.40070 4.53529 4.56880 4.79092 4.80941 4.91570 4.94259 5.09329 5.11936 5.19772 5.20568 5.30336 5.32210 5.41536 5.45048 5.46256 5.49103 5.53215 5.60831 5.65628 5.70350 5.76007 5.78626 5.83375 5.86138 5.88548 5.98559 6.00083 6.11689 6.14468 6.26744 6.34328 6.46000 6.51363 6.72000 7.00697 7.07997 7.49428 7.54696 7.67620 7.83113 8.22911 8.30313 9.08316 9.70744 10.27457 11.20893 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002544 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.702753 B =11002.291679 C =12468.163601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.096 4.096 6 C -0.106 4.106 7 C 0.536 3.464 8 O -0.541 6.541 9 N -0.716 5.716 10 C 0.130 3.870 11 C 0.065 3.935 12 H 0.058 0.942 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.278 1.278 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.389 6.389 26 C -0.123 4.123 27 C -0.142 4.142 28 C -0.119 4.119 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.403 0.597 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.255 0.745 44 H 0.028 0.972 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.093 0.907 49 H 0.073 0.927 50 H 0.082 0.918 51 H 0.071 0.929 52 H 0.083 0.917 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -1.972 -23.235 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.310 6.310 4 C -0.013 4.013 5 C -0.134 4.134 6 C -0.110 4.110 7 C 0.321 3.679 8 O -0.418 6.418 9 N -0.366 5.366 10 C 0.007 3.993 11 C 0.005 3.995 12 H 0.076 0.924 13 C -0.005 4.005 14 N -0.318 5.318 15 C -0.384 4.384 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.203 1.203 23 C 0.014 3.986 24 C -0.038 4.038 25 O -0.308 6.308 26 C -0.160 4.160 27 C -0.179 4.179 28 C -0.157 4.157 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.111 0.889 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.090 0.910 52 H 0.102 0.898 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.247 -2.634 -23.139 23.872 hybrid contribution 0.431 0.866 1.021 1.407 sum -4.816 -1.767 -22.118 22.705 Atomic orbital electron populations 1.21742 0.93730 1.02209 1.03131 1.22447 0.95555 0.83816 1.00126 1.87844 1.21147 1.26494 1.95482 1.22443 0.81050 0.97166 1.00595 1.21395 0.91978 0.95820 1.04181 1.21968 0.95139 0.99568 0.94279 1.19845 0.80857 0.83048 0.84107 1.90683 1.37571 1.27509 1.86074 1.45901 1.54735 1.29071 1.06927 1.21431 0.98500 0.98009 0.81407 1.22796 0.83398 0.98203 0.95065 0.92375 1.21437 0.96978 0.94931 0.87190 1.44073 1.01688 1.58529 1.27502 1.19221 0.97595 1.31626 0.90002 0.91298 1.25058 0.98527 0.99793 0.96299 1.70026 1.27116 1.41900 1.15685 0.86208 0.79454 0.80932 0.79787 1.21398 1.21656 1.20325 1.21457 0.83231 1.00580 0.93378 1.23328 0.98027 0.92525 0.89930 1.87798 1.20863 1.66308 1.55872 1.22989 0.98705 0.94170 1.00150 1.22841 0.97625 0.96776 1.00657 1.22871 0.98267 0.99578 0.94983 0.91972 0.91152 0.91701 0.93563 0.93294 0.93090 0.93247 0.89947 0.90302 0.76222 0.90787 0.90110 0.95269 0.91801 0.93480 0.95407 0.88654 0.90028 0.94115 0.88860 0.90857 0.89937 0.91013 0.89848 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -4.57 10.34 -35.23 -0.36 -4.94 16 4 C 0.06 0.70 5.65 37.16 0.21 0.91 16 5 C -0.10 -0.92 5.02 -26.73 -0.13 -1.05 16 6 C -0.11 -1.04 0.79 -154.85 -0.12 -1.17 16 7 C 0.54 7.08 5.85 -10.98 -0.06 7.01 16 8 O -0.54 -8.96 15.94 5.56 0.09 -8.87 16 9 N -0.72 -9.31 5.50 -60.29 -0.33 -9.65 16 10 C 0.13 1.95 5.35 -4.04 -0.02 1.93 16 11 C 0.07 1.12 2.81 -26.58 -0.07 1.05 16 12 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 13 C 0.12 2.52 6.02 -3.53 -0.02 2.50 16 14 N -0.59 -14.74 3.05 -171.83 -0.52 -15.26 16 15 C -0.26 -6.88 9.65 -15.06 -0.15 -7.02 16 16 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 17 C 0.00 0.05 4.96 -17.43 -0.09 -0.03 16 18 N -0.90 -25.81 11.09 55.49 0.62 -25.20 16 19 Si 0.91 21.31 29.58 -169.99 -5.03 16.28 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.14 3.29 5.44 -3.53 -0.02 3.27 16 24 C 0.04 0.75 6.99 37.31 0.26 1.01 16 25 O -0.39 -7.20 10.34 -35.23 -0.36 -7.57 16 26 C -0.12 -0.97 7.22 -25.92 -0.19 -1.16 16 27 C -0.14 -1.19 7.81 -25.92 -0.20 -1.39 16 28 C -0.12 -1.08 6.23 -25.92 -0.16 -1.24 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.50 7.47 -51.93 -0.39 0.12 16 35 H 0.05 0.63 7.73 -51.93 -0.40 0.22 16 36 H 0.08 0.67 8.01 -51.92 -0.42 0.26 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.68 8.48 -40.82 -0.35 4.33 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 2.47 6.11 -51.93 -0.32 2.15 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.59 8.01 -51.93 -0.42 0.17 16 49 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 50 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.08 0.90 7.34 -51.93 -0.38 0.52 16 53 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 419.52 15.07 6.32 6.32 Total: -1.00 -31.54 419.52 -9.54 -41.08 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -9.81 Total: 3.20 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.14 Total: 4.60 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.24 Total: -50.11 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.64 Total: -21.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.54 -9.54 -41.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715279283.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.789 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds