Wall clock time and date at job start Sat Apr 11 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47199 * 2 1 4 4 C 1.42899 * 113.99962 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47012 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47356 * 182.42419 * 5 4 3 7 7 C 1.50704 * 112.84741 * 292.00846 * 6 5 4 8 8 O 1.21279 * 120.00288 * 115.53843 * 7 6 5 9 9 N 1.34774 * 119.99589 * 295.53691 * 7 6 5 10 10 C 1.46504 * 119.99886 * 175.00524 * 9 7 6 11 11 C 1.53003 * 109.47126 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.51120 * 305.10170 * 11 10 9 13 13 C 1.53299 * 109.51221 * 184.99599 * 11 10 9 14 14 N 1.47154 * 108.38433 * 187.77450 * 13 11 10 15 15 C 1.36931 * 120.98217 * 230.55866 * 14 13 11 16 16 H 1.08002 * 119.99796 * 26.22083 * 15 14 13 17 17 C 1.38812 * 120.00055 * 206.22367 * 15 14 13 18 18 N 1.31615 * 119.99911 * 16.20684 * 17 15 14 19 19 Si 1.86793 * 120.00029 * 196.20659 * 17 15 14 20 20 H 1.48503 * 109.47301 * 94.68043 * 19 17 15 21 21 H 1.48505 * 109.47324 * 214.67877 * 19 17 15 22 22 H 1.48498 * 109.47291 * 334.67774 * 19 17 15 23 23 C 1.47154 * 118.03248 * 50.53493 * 14 13 11 24 24 C 1.53292 * 108.39021 * 309.46453 * 23 14 13 25 25 O 1.42966 * 109.50848 * 65.25238 * 11 10 9 26 26 C 1.53777 * 113.61845 * 160.69743 * 6 5 4 27 27 C 1.53781 * 87.08232 * 220.01637 * 26 6 5 28 28 C 1.53783 * 113.61391 * 63.19701 * 6 5 4 29 29 H 1.08997 * 109.46860 * 60.00130 * 1 2 3 30 30 H 1.08999 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47208 * 300.00520 * 1 2 3 32 32 H 1.08993 * 109.47332 * 239.99079 * 2 1 3 33 33 H 1.09005 * 109.47283 * 119.99408 * 2 1 3 34 34 H 1.09002 * 109.47559 * 59.99763 * 4 3 2 35 35 H 1.08998 * 109.47288 * 299.99485 * 4 3 2 36 36 H 1.09008 * 109.46959 * 302.41736 * 5 4 3 37 37 H 1.08996 * 109.47691 * 62.42154 * 5 4 3 38 38 H 0.97000 * 119.99999 * 354.99610 * 9 7 6 39 39 H 1.08998 * 109.46906 * 299.99354 * 10 9 7 40 40 H 1.09001 * 109.47327 * 59.99599 * 10 9 7 41 41 H 1.08995 * 109.67974 * 307.49699 * 13 11 10 42 42 H 1.08995 * 109.68066 * 68.01390 * 13 11 10 43 43 H 0.97002 * 120.00445 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.68038 * 69.19054 * 23 14 13 45 45 H 1.08999 * 109.67814 * 189.70201 * 23 14 13 46 46 H 1.08994 * 109.51419 * 172.22931 * 24 23 14 47 47 H 1.09003 * 109.50856 * 292.38335 * 24 23 14 48 48 H 1.08996 * 113.61226 * 334.56912 * 26 6 5 49 49 H 1.09005 * 113.61430 * 105.47299 * 26 6 5 50 50 H 1.08991 * 113.61814 * 270.88395 * 27 26 6 51 51 H 1.09003 * 113.68649 * 139.98800 * 27 26 6 52 52 H 1.09000 * 113.61917 * 254.52995 * 28 6 5 53 53 H 1.08997 * 113.61473 * 25.43784 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 6 5.3494 3.0595 -0.0605 7 6 6.0252 2.5738 1.1959 8 8 6.7559 1.6066 1.1563 9 7 5.8177 3.2143 2.3634 10 6 6.3856 2.6794 3.6034 11 6 6.0045 3.5892 4.7730 12 1 6.3164 4.6108 4.5561 13 6 6.7000 3.1013 6.0490 14 7 6.1745 3.8714 7.1875 15 6 7.0194 4.4798 8.0770 16 1 8.0111 4.7732 7.7657 17 6 6.6013 4.7193 9.3788 18 7 5.5448 4.0960 9.8558 19 14 7.5380 5.9263 10.4534 20 1 6.8970 7.2633 10.3710 21 1 7.5185 5.4540 11.8613 22 1 8.9432 6.0211 9.9826 23 6 4.7143 3.9689 7.3415 24 6 4.1155 4.4145 6.0026 25 8 4.5883 3.5519 4.9651 26 6 5.8396 4.4386 -0.5322 27 6 6.9174 3.6930 -1.3367 28 6 5.9622 2.4879 -1.3500 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8898 33 1 1.8934 -0.5138 0.8901 34 1 3.8341 0.9764 -0.8891 35 1 3.8333 0.9767 0.8908 36 1 3.3871 3.4309 -0.8682 37 1 3.4590 3.4127 0.9103 38 1 5.2924 4.0296 2.3826 39 1 5.9943 1.6774 3.7796 40 1 7.4713 2.6354 3.5165 41 1 6.4943 2.0411 6.1967 42 1 7.7752 3.2582 5.9639 43 1 5.2523 4.2636 10.7654 44 1 4.3088 2.9961 7.6194 45 1 4.4747 4.7005 8.1131 46 1 3.0281 4.3602 6.0540 47 1 4.4200 5.4395 5.7908 48 1 5.1187 4.9687 -1.1546 49 1 6.2429 5.0565 0.2700 50 1 7.8358 3.5161 -0.7771 51 1 7.0986 4.1174 -2.3243 52 1 6.4645 1.5311 -1.2079 53 1 5.2749 2.4848 -2.1959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715279283.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:59 Heat of formation + Delta-G solvation = -116.502731 kcal Electronic energy + Delta-G solvation = -30926.306949 eV Core-core repulsion = 26798.292753 eV Total energy + Delta-G solvation = -4128.014196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86811 -40.23736 -39.07184 -38.41700 -36.52510 -35.80364 -33.51841 -33.32254 -32.37230 -31.24153 -29.33613 -27.70693 -26.56099 -26.06190 -24.99177 -23.80414 -23.69209 -22.99595 -22.23035 -21.53926 -20.01445 -18.89043 -17.86371 -17.56970 -17.49384 -17.30594 -17.12450 -16.86778 -16.31638 -16.18007 -15.86310 -15.53916 -15.49622 -15.21457 -15.07958 -14.97987 -14.65352 -14.56280 -14.06852 -13.69447 -13.46316 -13.32353 -13.26069 -13.22764 -13.02758 -12.97567 -12.71942 -12.54341 -12.36131 -12.18178 -12.10257 -12.08265 -12.02024 -11.89915 -11.79233 -11.36853 -11.26320 -11.16469 -10.84725 -10.77070 -10.59622 -10.55261 -10.14398 -8.78172 -7.92742 -5.41052 1.46175 1.46881 1.55882 1.56661 2.08496 2.46723 2.61378 2.75115 3.22235 3.41566 3.46246 3.59228 3.71237 3.90471 3.94541 4.00950 4.03615 4.08344 4.16665 4.19003 4.23460 4.41723 4.43220 4.45347 4.47163 4.49181 4.55716 4.59169 4.68778 4.73493 4.80839 4.84697 4.87041 4.89874 4.90265 5.01268 5.02548 5.05467 5.08973 5.14030 5.22089 5.25143 5.27517 5.36665 5.48140 5.53556 5.59435 6.20710 6.23298 6.30942 6.50978 7.04135 7.18594 7.71799 8.25488 9.13217 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002544 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.702753 B =11002.291679 C =12468.163601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.405 6.405 4 C 0.064 3.936 5 C -0.090 4.090 6 C -0.106 4.106 7 C 0.534 3.466 8 O -0.579 6.579 9 N -0.710 5.710 10 C 0.141 3.859 11 C 0.081 3.919 12 H 0.070 0.930 13 C 0.117 3.883 14 N -0.613 5.613 15 C -0.266 4.266 16 H 0.073 0.927 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.973 3.027 20 H -0.282 1.282 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.143 3.857 24 C 0.054 3.946 25 O -0.390 6.390 26 C -0.111 4.111 27 C -0.142 4.142 28 C -0.118 4.118 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.252 0.748 44 H -0.003 1.003 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.052 0.948 48 H 0.121 0.879 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.093 0.907 52 H 0.059 0.941 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 -0.298 -25.712 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.325 6.325 4 C -0.012 4.012 5 C -0.127 4.127 6 C -0.109 4.109 7 C 0.321 3.679 8 O -0.459 6.459 9 N -0.361 5.361 10 C 0.017 3.983 11 C 0.021 3.979 12 H 0.088 0.912 13 C -0.010 4.010 14 N -0.337 5.337 15 C -0.396 4.396 16 H 0.091 0.909 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.801 3.199 20 H -0.209 1.209 21 H -0.223 1.223 22 H -0.192 1.192 23 C 0.018 3.982 24 C -0.024 4.024 25 O -0.309 6.309 26 C -0.149 4.149 27 C -0.179 4.179 28 C -0.155 4.155 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.034 0.966 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.015 0.985 45 H 0.087 0.913 46 H 0.126 0.874 47 H 0.071 0.929 48 H 0.139 0.861 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.111 0.889 52 H 0.078 0.922 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.585 -0.946 -25.651 26.269 hybrid contribution 0.556 0.231 1.782 1.881 sum -5.029 -0.715 -23.869 24.403 Atomic orbital electron populations 1.21753 0.92466 1.03392 1.02870 1.22645 0.96665 0.83093 1.00405 1.87823 1.21395 1.27735 1.95508 1.22458 0.80841 0.98172 0.99755 1.21390 0.91539 0.94849 1.04943 1.21956 0.94984 1.01339 0.92651 1.20490 0.80182 0.82264 0.84957 1.90666 1.39372 1.29192 1.86691 1.45807 1.54640 1.29374 1.06278 1.21168 0.98823 0.96691 0.81652 1.22628 0.82355 0.99012 0.93903 0.91164 1.21592 0.97925 0.93871 0.87561 1.44351 1.02044 1.59127 1.28216 1.19570 0.98045 1.31377 0.90576 0.90913 1.25849 0.99635 1.01498 0.97638 1.70187 1.28798 1.43449 1.15788 0.85169 0.78678 0.78631 0.77457 1.20894 1.22275 1.19181 1.21319 0.83164 0.98276 0.95469 1.23163 0.99209 0.92805 0.87176 1.87815 1.21505 1.66357 1.55215 1.23041 0.98717 0.92917 1.00187 1.22817 0.96806 0.96638 1.01634 1.22930 0.98715 0.98658 0.95231 0.91491 0.89304 0.92629 0.92227 0.94103 0.92124 0.95942 0.87568 0.90942 0.75098 0.92344 0.89515 0.96637 0.90965 0.93912 0.98488 0.91257 0.87426 0.92944 0.86103 0.90921 0.92053 0.88878 0.92227 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.88 6.66 71.98 0.48 1.36 16 3 O -0.40 -9.05 10.34 -148.98 -1.54 -10.59 16 4 C 0.06 1.34 5.65 71.98 0.41 1.75 16 5 C -0.09 -1.51 5.02 30.59 0.15 -1.36 16 6 C -0.11 -1.88 0.79 -52.40 -0.04 -1.92 16 7 C 0.53 13.76 5.85 87.66 0.51 14.27 16 8 O -0.58 -19.43 15.94 -3.03 -0.05 -19.48 16 9 N -0.71 -17.73 5.50 -463.05 -2.55 -20.28 16 10 C 0.14 4.16 5.35 86.38 0.46 4.63 16 11 C 0.08 2.69 2.81 30.70 0.09 2.78 16 12 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 13 C 0.12 4.85 6.02 86.35 0.52 5.37 16 14 N -0.61 -30.77 3.05 -697.55 -2.13 -32.90 16 15 C -0.27 -14.42 9.65 84.03 0.81 -13.61 16 16 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 17 C -0.05 -2.80 4.96 84.86 0.42 -2.38 16 18 N -0.94 -54.91 11.09 21.65 0.24 -54.67 16 19 Si 0.97 44.05 29.58 68.60 2.03 46.08 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C 0.14 6.91 5.44 86.35 0.47 7.38 16 24 C 0.05 2.00 6.99 72.08 0.50 2.50 16 25 O -0.39 -13.97 10.34 -148.98 -1.54 -15.51 16 26 C -0.11 -1.41 7.22 31.12 0.22 -1.19 16 27 C -0.14 -2.05 7.81 31.12 0.24 -1.81 16 28 C -0.12 -1.90 6.23 31.12 0.19 -1.70 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.06 1.12 7.47 -2.39 -0.02 1.11 16 35 H 0.02 0.58 7.73 -2.39 -0.02 0.56 16 36 H 0.11 1.33 8.01 -2.38 -0.02 1.32 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.41 8.77 8.48 -92.71 -0.79 7.99 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 2.83 7.96 -2.39 -0.02 2.81 16 43 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.07 3.69 6.11 -2.39 -0.01 3.68 16 46 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 47 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.12 0.94 8.01 -2.39 -0.02 0.92 16 49 H 0.07 0.96 8.10 -2.38 -0.02 0.95 16 50 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 1.27 7.34 -2.39 -0.02 1.25 16 53 H 0.11 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -69.77 419.52 0.74 -69.03 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.09 Total: 23.64 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.19 Total: 14.68 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.44 Total: -107.85 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -3.13 Total: -45.58 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.77 0.74 -69.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715279283.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.473 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds