Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47348 * 2 1 4 4 C 1.42895 * 114.00431 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.54476 * 4.41272 * 4 3 2 6 6 C 1.52994 * 117.50268 * 218.74555 * 4 3 2 7 7 C 1.52992 * 60.00141 * 252.48389 * 6 4 3 8 8 H 1.08999 * 117.50077 * 107.48480 * 7 6 4 9 9 C 1.50701 * 117.49668 * 252.51032 * 7 6 4 10 10 O 1.21276 * 120.00504 * 68.62367 * 9 7 6 11 11 N 1.34777 * 119.99880 * 248.61612 * 9 7 6 12 12 C 1.46932 * 120.62955 * 359.72644 * 11 9 7 13 13 C 1.52766 * 109.00466 * 233.57777 * 12 11 9 14 14 C 1.53039 * 109.38598 * 305.58698 * 13 12 11 15 15 N 1.46495 * 109.45989 * 181.25735 * 14 13 12 16 16 C 1.36936 * 120.00512 * 304.73059 * 15 14 13 17 17 H 1.08005 * 119.99506 * 321.82561 * 16 15 14 18 18 C 1.38815 * 120.00492 * 141.82897 * 16 15 14 19 19 N 1.31609 * 120.00055 * 157.03669 * 18 16 15 20 20 Si 1.86798 * 119.99636 * 337.03562 * 18 16 15 21 21 H 1.48505 * 109.47180 * 95.45192 * 20 18 16 22 22 H 1.48496 * 109.46914 * 215.44762 * 20 18 16 23 23 H 1.48498 * 109.47387 * 335.45189 * 20 18 16 24 24 C 1.46504 * 119.99600 * 124.72456 * 15 14 13 25 25 C 1.53005 * 109.46955 * 90.00407 * 24 15 14 26 26 O 1.42901 * 109.46916 * 64.99833 * 25 24 15 27 27 C 1.42904 * 113.99387 * 180.02562 * 26 25 24 28 28 C 1.53047 * 109.53721 * 61.24191 * 14 13 12 29 29 C 1.46925 * 120.63147 * 179.97438 * 11 9 7 30 30 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47479 * 300.00893 * 1 2 3 32 32 H 1.09008 * 109.46804 * 60.00240 * 1 2 3 33 33 H 1.08990 * 109.47339 * 239.99511 * 2 1 3 34 34 H 1.09003 * 109.46639 * 119.99312 * 2 1 3 35 35 H 1.08999 * 117.49639 * 359.97271 * 6 4 3 36 36 H 1.08996 * 117.50539 * 144.99429 * 6 4 3 37 37 H 1.09001 * 109.58706 * 353.41039 * 12 11 9 38 38 H 1.08994 * 109.58866 * 113.84169 * 12 11 9 39 39 H 1.09000 * 109.56255 * 185.55278 * 13 12 11 40 40 H 1.09003 * 109.38279 * 65.51671 * 13 12 11 41 41 H 1.09001 * 109.44787 * 301.22819 * 14 13 12 42 42 H 0.97001 * 119.99938 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46918 * 210.00176 * 24 15 14 44 44 H 1.08993 * 109.47305 * 330.00019 * 24 15 14 45 45 H 1.09000 * 109.46916 * 184.99516 * 25 24 15 46 46 H 1.08998 * 109.46672 * 304.99515 * 25 24 15 47 47 H 1.08998 * 109.46658 * 180.02562 * 27 26 25 48 48 H 1.08999 * 109.46778 * 299.99413 * 27 26 25 49 49 H 1.08992 * 109.47495 * 60.00239 * 27 26 25 50 50 H 1.08994 * 109.49557 * 178.68313 * 28 14 13 51 51 H 1.09002 * 109.52286 * 58.60134 * 28 14 13 52 52 H 1.08997 * 109.58806 * 246.15777 * 29 11 9 53 53 H 1.08993 * 109.58663 * 6.58713 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9770 0.5197 -0.0747 6 6 4.0512 2.5712 0.8500 7 6 4.0430 2.6886 -0.6754 8 1 3.3591 3.4110 -1.1209 9 6 5.3548 2.5059 -1.3944 10 8 5.8848 1.4155 -1.4214 11 7 5.9389 3.5545 -2.0074 12 6 5.3060 4.8803 -1.9886 13 6 5.1745 5.3892 -3.4230 14 6 6.5459 5.3566 -4.1013 15 7 6.4272 5.8725 -5.4673 16 6 5.5284 5.3121 -6.3352 17 1 5.3678 4.2441 -6.3312 18 6 4.8237 6.1167 -7.2201 19 7 4.3244 5.6013 -8.3234 20 14 4.5841 7.9308 -6.8449 21 1 5.6361 8.7217 -7.5326 22 1 3.2469 8.3631 -7.3247 23 1 4.6788 8.1499 -5.3792 24 6 7.2701 6.9881 -5.9048 25 6 8.5709 6.4426 -6.4974 26 8 8.2797 5.7009 -7.6836 27 6 9.4325 5.1446 -8.3189 28 6 7.0620 3.9164 -4.1434 29 6 7.2180 3.3922 -2.7119 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 3.3727 3.2164 1.4081 36 1 5.0054 2.3619 1.3336 37 1 4.3170 4.8067 -1.5363 38 1 5.9225 5.5714 -1.4138 39 1 4.7971 6.4118 -3.4143 40 1 4.4820 4.7505 -3.9714 41 1 7.2440 5.9763 -3.5385 42 1 3.8322 6.1636 -8.9419 43 1 6.7413 7.5680 -6.6612 44 1 7.4991 7.6267 -5.0517 45 1 9.2349 7.2719 -6.7413 46 1 9.0557 5.7904 -5.7709 47 1 9.1273 4.5978 -9.2111 48 1 10.1147 5.9468 -8.6005 49 1 9.9348 4.4654 -7.6302 50 1 8.0281 3.8908 -4.6474 51 1 6.3524 3.2908 -4.6849 52 1 7.9933 3.9597 -2.1972 53 1 7.4902 2.3371 -2.7367 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716717439.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -85.722816 kcal Electronic energy + Delta-G solvation = -31267.284901 eV Core-core repulsion = 27140.605422 eV Total energy + Delta-G solvation = -4126.679479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.45292 -39.74052 -39.04078 -38.30922 -36.65124 -36.11583 -33.86291 -32.73335 -32.10654 -31.65690 -29.98593 -27.17799 -26.98286 -25.55358 -24.37441 -23.83261 -23.79745 -23.10704 -22.53388 -21.27239 -19.89029 -18.97018 -18.26554 -17.61253 -17.25642 -17.14347 -16.99153 -16.51286 -16.43809 -16.29383 -15.97670 -15.63512 -15.57859 -15.11010 -14.92639 -14.72126 -14.41804 -14.30077 -13.78422 -13.73615 -13.65071 -13.39998 -13.37949 -13.19286 -13.03870 -12.96833 -12.89797 -12.47665 -12.31598 -12.20986 -12.14929 -12.11334 -11.89546 -11.80596 -11.64928 -11.60745 -11.32334 -11.20367 -10.81306 -10.48735 -10.32596 -10.20428 -9.64041 -8.62106 -8.03047 -5.39350 1.36711 1.40228 1.45441 1.55892 1.89662 2.51684 2.54521 2.80931 3.10437 3.17059 3.45101 3.55288 3.68641 3.90288 3.98812 4.05139 4.12433 4.16563 4.22716 4.31057 4.31701 4.36629 4.42325 4.45340 4.45584 4.49935 4.56289 4.59988 4.65442 4.66897 4.72000 4.78054 4.80263 4.82720 4.86665 4.87650 4.91348 4.99957 5.01259 5.08839 5.10111 5.20416 5.25950 5.45678 5.59040 5.62797 6.09056 6.18254 6.33044 6.40095 6.61143 7.10936 7.15112 7.80467 8.18292 9.18256 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.002907 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.554118 B = 9628.127352 C =10522.144230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.371 6.371 4 C 0.041 3.959 5 H 0.115 0.885 6 C -0.123 4.123 7 C -0.205 4.205 8 H 0.136 0.864 9 C 0.542 3.458 10 O -0.589 6.589 11 N -0.601 5.601 12 C 0.115 3.885 13 C -0.136 4.136 14 C 0.175 3.825 15 N -0.602 5.602 16 C -0.212 4.212 17 H 0.022 0.978 18 C -0.019 4.019 19 N -0.956 5.956 20 Si 0.937 3.063 21 H -0.285 1.285 22 H -0.321 1.321 23 H -0.242 1.242 24 C 0.124 3.876 25 C 0.047 3.953 26 O -0.400 6.400 27 C 0.030 3.970 28 C -0.127 4.127 29 C 0.122 3.878 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.090 0.910 42 H 0.254 0.746 43 H 0.034 0.966 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.043 0.957 50 H 0.065 0.935 51 H 0.022 0.978 52 H 0.097 0.903 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -1.884 20.667 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.290 6.290 4 C -0.018 4.018 5 H 0.132 0.868 6 C -0.160 4.160 7 C -0.226 4.226 8 H 0.153 0.847 9 C 0.331 3.669 10 O -0.471 6.471 11 N -0.332 5.332 12 C -0.007 4.007 13 C -0.176 4.176 14 C 0.069 3.931 15 N -0.324 5.324 16 C -0.342 4.342 17 H 0.039 0.961 18 C -0.213 4.213 19 N -0.602 5.602 20 Si 0.767 3.233 21 H -0.212 1.212 22 H -0.250 1.250 23 H -0.166 1.166 24 C -0.001 4.001 25 C -0.032 4.032 26 O -0.319 6.319 27 C -0.067 4.067 28 C -0.167 4.167 29 C -0.001 4.001 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.084 0.916 51 H 0.041 0.959 52 H 0.115 0.885 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.385 -2.259 20.459 20.860 hybrid contribution -0.070 0.295 -1.318 1.352 sum 3.315 -1.964 19.141 19.525 Atomic orbital electron populations 1.21775 0.92320 1.03631 1.02871 1.22774 0.96570 0.82345 1.00990 1.87788 1.18549 1.28597 1.94105 1.22621 0.82051 0.94275 1.02810 0.86772 1.23497 1.03224 1.00380 0.88942 1.22684 0.96451 1.05308 0.98189 0.84652 1.19976 0.85522 0.83156 0.78209 1.90629 1.66519 1.26556 1.63389 1.48154 1.22868 1.10164 1.51973 1.21910 0.99846 0.82407 0.96552 1.22146 0.98957 1.01262 0.95186 1.20584 0.95351 0.92876 0.84261 1.44194 1.40982 1.38492 1.08709 1.18109 1.14272 0.89964 1.11899 0.96059 1.25934 0.97869 1.01461 0.96085 1.70054 1.41393 1.37793 1.10938 0.85952 0.74801 0.82648 0.79911 1.21246 1.25024 1.16573 1.21540 0.90429 0.90266 0.97892 1.23296 0.98391 0.94618 0.86874 1.88234 1.31766 1.70944 1.40910 1.22760 0.88737 0.97750 0.97445 1.22205 1.00590 0.98592 0.95353 1.21607 0.85078 1.01921 0.91493 0.88927 0.91406 0.92778 0.93576 0.91441 0.85116 0.86631 0.88210 0.88003 0.90754 0.94607 0.89175 0.93719 0.94846 0.88602 0.92623 0.93018 0.90982 0.93044 0.93807 0.91590 0.95871 0.88469 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.05 0.90 6.53 71.98 0.47 1.37 16 3 O -0.37 -8.72 10.60 -148.98 -1.58 -10.29 16 4 C 0.04 0.94 5.95 30.59 0.18 1.13 16 5 H 0.11 2.77 7.45 -2.38 -0.02 2.76 16 6 C -0.12 -2.13 10.18 30.59 0.31 -1.82 16 7 C -0.21 -4.86 5.08 -11.54 -0.06 -4.92 16 8 H 0.14 3.11 6.55 -2.39 -0.02 3.09 16 9 C 0.54 16.18 7.48 87.66 0.66 16.84 16 10 O -0.59 -21.53 15.67 -3.02 -0.05 -21.58 16 11 N -0.60 -16.57 2.98 -819.65 -2.44 -19.01 16 12 C 0.12 2.65 6.32 86.22 0.54 3.19 16 13 C -0.14 -4.37 5.21 30.53 0.16 -4.21 16 14 C 0.18 5.92 2.60 45.02 0.12 6.03 16 15 N -0.60 -26.01 1.98 -677.87 -1.34 -27.35 16 16 C -0.21 -11.77 8.05 84.03 0.68 -11.10 16 17 H 0.02 1.40 7.24 -2.91 -0.02 1.38 16 18 C -0.02 -1.09 5.29 84.86 0.45 -0.64 16 19 N -0.96 -61.84 13.97 21.65 0.30 -61.54 16 20 Si 0.94 45.81 25.12 68.60 1.72 47.53 16 21 H -0.28 -13.59 6.67 99.48 0.66 -12.92 16 22 H -0.32 -16.35 7.11 99.48 0.71 -15.64 16 23 H -0.24 -10.55 7.11 99.48 0.71 -9.84 16 24 C 0.12 4.78 4.93 86.38 0.43 5.20 16 25 C 0.05 1.64 6.28 71.98 0.45 2.10 16 26 O -0.40 -17.47 10.18 -148.98 -1.52 -18.98 16 27 C 0.03 0.97 11.01 113.37 1.25 2.22 16 28 C -0.13 -4.39 5.38 30.69 0.17 -4.23 16 29 C 0.12 3.42 6.44 86.38 0.56 3.97 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 1.98 5.51 -2.39 -0.01 1.97 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.03 1.45 7.61 -2.39 -0.02 1.43 16 41 H 0.09 2.40 7.77 -2.39 -0.02 2.39 16 42 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.03 1.50 3.40 -2.39 -0.01 1.50 16 44 H 0.10 2.86 7.88 -2.39 -0.02 2.84 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.02 1.00 7.24 -2.39 -0.02 0.99 16 52 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 Total: -1.00 -78.78 414.62 3.02 -75.76 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.83 Total: 21.81 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 7.09 Total: 13.66 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -3.48 Total: -107.90 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -3.14 Total: -50.86 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.72 Total: 47.53 kcal Total: -78.78 3.02 -75.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716717439.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.967 kcal (2) G-P(sol) polarization free energy of solvation -78.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds