Wall clock time and date at job start Sat Apr 11 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47666 * 2 1 4 4 C 1.42895 * 114.00404 * 184.28790 * 3 2 1 5 5 H 1.08998 * 109.46806 * 18.53492 * 4 3 2 6 6 C 1.50692 * 109.47241 * 138.54189 * 4 3 2 7 7 O 1.21280 * 120.00214 * 7.05548 * 6 4 3 8 8 N 1.34781 * 119.99939 * 187.05769 * 6 4 3 9 9 C 1.46500 * 119.99892 * 184.99316 * 8 6 4 10 10 C 1.53002 * 109.47093 * 180.02562 * 9 8 6 11 11 H 1.09001 * 110.51628 * 307.79232 * 10 9 8 12 12 C 1.55058 * 110.58379 * 185.00277 * 10 9 8 13 13 C 1.55030 * 102.12939 * 204.93028 * 12 10 9 14 14 C 1.53325 * 103.78491 * 20.86466 * 13 12 10 15 15 C 1.52648 * 115.56452 * 133.64215 * 14 13 12 16 16 N 1.47221 * 87.77983 * 90.04471 * 15 14 13 17 17 C 1.36942 * 135.96555 * 206.41314 * 16 15 14 18 18 H 1.07994 * 119.99901 * 354.45112 * 17 16 15 19 19 C 1.38806 * 119.99605 * 174.44772 * 17 16 15 20 20 N 1.31624 * 119.99574 * 182.48964 * 19 17 16 21 21 Si 1.86797 * 120.00600 * 2.48862 * 19 17 16 22 22 H 1.48501 * 109.47537 * 176.36134 * 21 19 17 23 23 H 1.48494 * 109.47093 * 56.35656 * 21 19 17 24 24 H 1.48507 * 109.46869 * 296.35870 * 21 19 17 25 25 C 1.47212 * 88.06805 * 26.66947 * 16 15 14 26 26 O 1.42840 * 108.32796 * 1.60209 * 14 13 12 27 27 C 1.52998 * 109.47129 * 258.53986 * 4 3 2 28 28 C 1.53004 * 109.47209 * 302.79345 * 27 4 3 29 29 C 1.53004 * 109.47223 * 62.78964 * 27 4 3 30 30 H 1.08991 * 109.47774 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46834 * 299.99949 * 1 2 3 32 32 H 1.09007 * 109.47013 * 59.99500 * 1 2 3 33 33 H 1.09000 * 109.46834 * 240.00051 * 2 1 3 34 34 H 1.08995 * 109.47182 * 120.00122 * 2 1 3 35 35 H 0.96994 * 119.99941 * 5.00041 * 8 6 4 36 36 H 1.08999 * 109.47269 * 60.00271 * 9 8 6 37 37 H 1.09000 * 109.47355 * 299.99902 * 9 8 6 38 38 H 1.08999 * 110.87545 * 86.77659 * 12 10 9 39 39 H 1.08997 * 111.05082 * 323.17324 * 12 10 9 40 40 H 1.08996 * 110.57003 * 262.28927 * 13 12 10 41 41 H 1.09003 * 110.68959 * 139.49447 * 13 12 10 42 42 H 1.09001 * 113.49824 * 335.31943 * 15 14 13 43 43 H 1.09000 * 113.55911 * 204.78561 * 15 14 13 44 44 H 0.96994 * 120.00456 * 5.01819 * 20 19 17 45 45 H 1.09005 * 113.50004 * 88.05489 * 25 16 15 46 46 H 1.08998 * 113.50400 * 218.60509 * 25 16 15 47 47 H 1.08995 * 109.47532 * 182.78604 * 27 4 3 48 48 H 1.08997 * 109.47253 * 64.84181 * 28 27 4 49 49 H 1.09002 * 109.46661 * 184.84271 * 28 27 4 50 50 H 1.08998 * 109.46865 * 304.84071 * 28 27 4 51 51 H 1.09001 * 109.47049 * 57.87451 * 29 27 4 52 52 H 1.08996 * 109.47546 * 177.88111 * 29 27 4 53 53 H 1.09001 * 109.46954 * 297.88265 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4275 1.4613 -0.0976 5 1 3.8416 0.5274 -0.4778 6 6 3.7778 2.5858 -1.0375 7 8 2.9052 3.3079 -1.4711 8 7 5.0610 2.7891 -1.3964 9 6 5.4163 3.9465 -2.2213 10 6 6.9236 3.9424 -2.4835 11 1 7.4741 3.8557 -1.5468 12 6 7.3474 5.2229 -3.2484 13 6 8.6443 4.7621 -3.9619 14 6 8.5254 3.2336 -3.9844 15 6 8.8448 2.5677 -5.3203 16 7 10.2450 2.4759 -4.8747 17 6 11.4703 2.4198 -5.4836 18 1 11.5360 2.3515 -6.5593 19 6 12.6277 2.4508 -4.7180 20 7 13.8056 2.4464 -5.3054 21 14 12.5138 2.4989 -2.8541 22 1 13.8790 2.4381 -2.2729 23 1 11.7204 1.3381 -2.3766 24 1 11.8514 3.7589 -2.4310 25 6 9.7507 2.4642 -3.4881 26 8 7.2796 2.8711 -3.3871 27 6 4.0120 1.7523 1.2860 28 6 3.3787 3.0260 1.8496 29 6 3.7160 0.5786 2.2219 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.7491 2.1691 -1.1085 36 1 5.1404 4.8629 -1.6996 37 1 4.8826 3.8939 -3.1703 38 1 7.5543 6.0386 -2.5556 39 1 6.5880 5.5151 -3.9737 40 1 9.5231 5.0694 -3.3950 41 1 8.6870 5.1577 -4.9767 42 1 8.7040 3.2251 -6.1783 43 1 8.3651 1.5974 -5.4492 44 1 13.8655 2.4950 -6.2723 45 1 9.5165 1.4658 -3.1185 46 1 10.3743 3.0343 -2.7994 47 1 5.0903 1.8883 1.2037 48 1 2.3138 2.8609 2.0127 49 1 3.8560 3.2810 2.7958 50 1 3.5154 3.8436 1.1417 51 1 4.1348 -0.3358 1.8016 52 1 4.1647 0.7691 3.1968 53 1 2.6376 0.4663 2.3340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717223048.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:32 Heat of formation + Delta-G solvation = -96.502175 kcal Electronic energy + Delta-G solvation = -30921.228536 eV Core-core repulsion = 26794.081629 eV Total energy + Delta-G solvation = -4127.146907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70276 -41.16915 -39.08497 -38.32565 -35.97277 -35.49659 -34.48223 -33.13902 -32.09945 -31.06184 -29.25064 -28.10633 -27.66551 -27.24103 -24.91418 -23.64785 -23.18888 -22.38608 -22.14538 -20.96733 -20.75950 -19.53386 -18.52834 -18.00923 -17.58999 -17.48331 -17.25910 -16.51373 -16.37979 -16.20165 -16.04810 -15.48527 -15.22536 -15.10114 -14.98717 -14.76323 -14.50222 -14.23708 -13.98986 -13.56842 -13.45165 -13.30160 -13.25418 -13.21635 -13.05781 -12.95881 -12.75398 -12.67655 -12.41591 -12.35648 -12.21882 -12.09857 -12.06164 -11.89946 -11.68927 -11.63661 -11.39001 -11.30152 -11.09205 -11.00205 -10.32305 -10.28304 -10.14017 -9.25923 -8.67030 -5.52154 1.34964 1.46995 1.55508 1.67645 1.87015 2.52104 2.55514 2.90611 3.00538 3.21686 3.38990 3.57371 3.60787 3.67503 3.71035 3.89569 3.91973 4.10794 4.13752 4.20629 4.26859 4.38284 4.41101 4.43622 4.47591 4.49087 4.58560 4.61361 4.66771 4.68142 4.79670 4.81368 4.81516 4.83560 4.91247 4.95862 4.98080 5.00478 5.02558 5.09401 5.13073 5.16042 5.23348 5.26531 5.35659 5.39433 5.43608 5.90748 6.00574 6.12096 6.52758 6.65726 7.19969 7.27359 8.20675 8.87267 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.002372 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.021609 B =11799.398456 C =12172.774136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.377 6.377 4 C 0.077 3.923 5 H 0.107 0.893 6 C 0.510 3.490 7 O -0.571 6.571 8 N -0.715 5.715 9 C 0.135 3.865 10 C 0.062 3.938 11 H 0.096 0.904 12 C -0.134 4.134 13 C -0.118 4.118 14 C 0.088 3.912 15 C 0.125 3.875 16 N -0.649 5.649 17 C -0.289 4.289 18 H 0.050 0.950 19 C -0.083 4.083 20 N -0.968 5.968 21 Si 1.111 2.889 22 H -0.304 1.304 23 H -0.268 1.268 24 H -0.259 1.259 25 C 0.075 3.925 26 O -0.362 6.362 27 C -0.103 4.103 28 C -0.139 4.139 29 C -0.147 4.147 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.247 0.753 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.099 0.901 48 H 0.051 0.949 49 H 0.070 0.930 50 H 0.034 0.966 51 H 0.068 0.932 52 H 0.070 0.930 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.798 -0.940 18.059 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.296 6.296 4 C 0.016 3.984 5 H 0.124 0.876 6 C 0.296 3.704 7 O -0.449 6.449 8 N -0.369 5.369 9 C 0.012 3.988 10 C 0.004 3.996 11 H 0.114 0.886 12 C -0.172 4.172 13 C -0.156 4.156 14 C 0.046 3.954 15 C 0.000 4.000 16 N -0.379 5.379 17 C -0.416 4.416 18 H 0.068 0.932 19 C -0.275 4.275 20 N -0.613 5.613 21 Si 0.937 3.063 22 H -0.232 1.232 23 H -0.194 1.194 24 H -0.186 1.186 25 C -0.050 4.050 26 O -0.280 6.280 27 C -0.122 4.122 28 C -0.196 4.196 29 C -0.204 4.204 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.251 0.749 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.117 0.883 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.053 0.947 51 H 0.087 0.913 52 H 0.089 0.911 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.596 -0.486 18.970 31.065 hybrid contribution 0.154 -0.596 -2.380 2.458 sum -24.442 -1.082 16.590 29.560 Atomic orbital electron populations 1.21753 0.93223 1.03303 1.02431 1.22944 0.96314 0.82721 1.01355 1.88009 1.19281 1.27963 1.94317 1.22124 0.83907 0.97200 0.95204 0.87580 1.21042 0.82281 0.85970 0.81062 1.90691 1.48848 1.49216 1.56158 1.45856 1.08664 1.29059 1.53279 1.21358 0.92666 0.89383 0.95437 1.23593 0.94544 0.87083 0.94332 0.88581 1.23143 0.96310 0.97639 1.00116 1.22415 0.99250 0.91302 1.02605 1.23124 0.83233 0.95113 0.93883 1.22548 0.83542 0.98266 0.95661 1.45807 1.00994 1.87437 1.03665 1.19961 0.82560 1.47486 0.91578 0.93201 1.27101 0.90466 0.99234 1.10687 1.71022 1.24357 1.55359 1.10599 0.83270 0.74265 0.78202 0.70574 1.23227 1.19398 1.18590 1.23467 0.93918 0.98934 0.88646 1.88759 1.36871 1.43638 1.58726 1.21565 1.00812 0.97290 0.92532 1.21691 1.01101 0.96122 1.00701 1.21898 1.02213 0.96833 0.99457 0.88935 0.92029 0.93290 0.93013 0.90809 0.74860 0.88773 0.92024 0.87182 0.89226 0.90699 0.90326 0.92653 0.93418 0.94442 0.93004 0.92374 0.88285 0.92976 0.91135 0.94708 0.91334 0.91055 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.04 0.58 6.06 71.98 0.44 1.02 16 3 O -0.38 -7.65 8.53 -130.04 -1.11 -8.76 16 4 C 0.08 1.28 2.39 29.84 0.07 1.35 16 5 H 0.11 1.30 7.62 -2.39 -0.02 1.28 16 6 C 0.51 11.47 5.95 87.65 0.52 11.99 16 7 O -0.57 -18.19 16.52 15.91 0.26 -17.93 16 8 N -0.71 -12.96 5.54 -463.06 -2.57 -15.53 16 9 C 0.14 2.57 5.42 86.38 0.47 3.04 16 10 C 0.06 1.21 3.38 31.30 0.11 1.32 16 11 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.13 -2.51 6.60 31.99 0.21 -2.30 16 13 C -0.12 -3.25 6.46 31.40 0.20 -3.05 16 14 C 0.09 2.86 1.66 -10.82 -0.02 2.84 16 15 C 0.13 4.93 8.20 83.40 0.68 5.61 16 16 N -0.65 -31.37 3.65 -739.19 -2.70 -34.07 16 17 C -0.29 -16.81 11.09 84.03 0.93 -15.88 16 18 H 0.05 3.15 8.05 -2.91 -0.02 3.13 16 19 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 20 N -0.97 -62.29 13.70 21.65 0.30 -61.99 16 21 Si 1.11 52.29 25.09 68.60 1.72 54.01 16 22 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.27 -11.57 6.72 99.48 0.67 -10.90 16 24 H -0.26 -10.74 6.32 99.48 0.63 -10.11 16 25 C 0.08 2.98 5.47 83.50 0.46 3.44 16 26 O -0.36 -9.98 11.02 -148.98 -1.64 -11.62 16 27 C -0.10 -1.28 2.76 -10.79 -0.03 -1.31 16 28 C -0.14 -2.17 8.81 71.98 0.63 -1.53 16 29 C -0.15 -1.33 8.18 71.98 0.59 -0.74 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.05 0.66 8.03 -2.39 -0.02 0.64 16 34 H 0.07 0.71 5.99 -2.39 -0.01 0.69 16 35 H 0.41 5.74 8.48 -92.71 -0.79 4.96 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.56 8.05 -2.39 -0.02 1.54 16 40 H 0.07 2.18 7.82 -2.39 -0.02 2.16 16 41 H 0.08 2.25 7.81 -2.39 -0.02 2.23 16 42 H 0.06 2.10 7.91 -2.39 -0.02 2.08 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 45 H 0.05 2.04 8.10 -2.38 -0.02 2.02 16 46 H 0.06 2.30 3.75 -2.39 -0.01 2.29 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.05 0.94 7.77 -2.39 -0.02 0.92 16 49 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.03 0.68 7.15 -2.39 -0.02 0.66 16 51 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.06 0.60 6.38 -2.39 -0.02 0.58 16 Total: -1.00 -78.26 411.78 0.68 -77.57 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.05 Total: 18.12 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 6.47 Total: 0.19 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -4.97 Total: -111.59 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -2.49 Total: -38.31 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 1.72 Total: 54.01 kcal Total: -78.26 0.68 -77.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717223048.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.928 kcal (2) G-P(sol) polarization free energy of solvation -78.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds