Wall clock time and date at job start Sat Apr 11 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46818 * 2 1 4 4 C 1.42900 * 114.00019 * 180.02562 * 3 2 1 5 5 C 1.53782 * 113.69161 * 110.93244 * 4 3 2 6 6 C 1.53788 * 87.08043 * 89.12679 * 5 4 3 7 7 C 1.53001 * 113.61566 * 139.97909 * 6 5 4 8 8 C 1.50702 * 109.47137 * 87.50382 * 7 6 5 9 9 O 1.21286 * 119.99609 * 0.02562 * 8 7 6 10 10 N 1.34766 * 120.00247 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00319 * 175.60686 * 10 8 7 12 12 C 1.53001 * 109.45924 * 300.33911 * 11 10 8 13 13 O 1.42895 * 109.47116 * 305.34590 * 12 11 10 14 14 C 1.53043 * 109.46292 * 180.36480 * 11 10 8 15 15 C 1.53167 * 109.32881 * 301.36049 * 14 11 10 16 16 N 1.46925 * 108.76619 * 305.35774 * 15 14 11 17 17 C 1.36940 * 120.62965 * 233.63307 * 16 15 14 18 18 H 1.07997 * 120.00278 * 141.91739 * 17 16 15 19 19 C 1.38815 * 119.99752 * 321.91483 * 17 16 15 20 20 N 1.31624 * 120.00051 * 354.46725 * 19 17 16 21 21 Si 1.86797 * 120.00405 * 174.46167 * 19 17 16 22 22 H 1.48503 * 109.46879 * 60.00018 * 21 19 17 23 23 H 1.48493 * 109.47557 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47222 * 300.00472 * 21 19 17 25 25 C 1.46925 * 118.74254 * 53.60781 * 16 15 14 26 26 C 1.53043 * 109.45633 * 60.31040 * 11 10 8 27 27 C 1.53779 * 87.08053 * 25.43370 * 6 5 4 28 28 H 1.08997 * 109.46948 * 59.99990 * 1 2 3 29 29 H 1.09004 * 109.46401 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47259 * 300.00029 * 1 2 3 31 31 H 1.08995 * 109.47259 * 239.99971 * 2 1 3 32 32 H 1.08996 * 109.47500 * 119.99248 * 2 1 3 33 33 H 1.09002 * 112.84963 * 339.66329 * 4 3 2 34 34 H 1.08995 * 113.61614 * 203.67030 * 5 4 3 35 35 H 1.09002 * 113.61420 * 334.58518 * 5 4 3 36 36 H 1.08995 * 113.69074 * 270.87685 * 6 5 4 37 37 H 1.09000 * 109.47355 * 207.50528 * 7 6 5 38 38 H 1.09008 * 109.47050 * 327.50481 * 7 6 5 39 39 H 0.97003 * 119.99998 * 355.60467 * 10 8 7 40 40 H 1.09002 * 109.47083 * 65.35075 * 12 11 10 41 41 H 1.09000 * 109.47075 * 185.34466 * 12 11 10 42 42 H 0.96699 * 113.99731 * 179.97438 * 13 12 11 43 43 H 1.09002 * 109.49165 * 61.29893 * 14 11 10 44 44 H 1.09001 * 109.49520 * 181.39645 * 14 11 10 45 45 H 1.08990 * 109.58829 * 185.57190 * 15 14 11 46 46 H 1.08997 * 109.58791 * 65.13639 * 15 14 11 47 47 H 0.96995 * 120.00332 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.58475 * 186.60679 * 25 16 15 49 49 H 1.08999 * 109.70603 * 66.24900 * 25 16 15 50 50 H 1.09009 * 109.49342 * 178.60830 * 26 11 10 51 51 H 1.08995 * 109.49794 * 298.70466 * 26 11 10 52 52 H 1.09000 * 113.61529 * 220.02092 * 27 6 5 53 53 H 1.08995 * 113.61685 * 89.11480 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 4.0065 2.0108 -1.3160 6 6 3.8425 3.4142 -0.7089 7 6 5.0058 4.3573 -1.0220 8 6 4.7493 5.0532 -2.3338 9 8 3.7355 4.8184 -2.9567 10 7 5.6463 5.9365 -2.8148 11 6 5.4446 6.5407 -4.1341 12 6 5.3934 5.4404 -5.1961 13 8 6.5704 4.6353 -5.1049 14 6 6.6029 7.4926 -4.4415 15 6 6.6728 8.5726 -3.3577 16 7 5.3621 9.2293 -3.2596 17 6 5.2549 10.5910 -3.3574 18 1 4.4177 11.0307 -3.8790 19 6 6.2225 11.4061 -2.7863 20 7 7.1831 10.8768 -2.0585 21 14 6.1615 13.2543 -3.0505 22 1 4.8824 13.7885 -2.5179 23 1 7.2989 13.8936 -2.3415 24 1 6.2549 13.5501 -4.5028 25 6 4.1686 8.3973 -3.0550 26 6 4.1269 7.3190 -4.1423 27 6 3.9474 2.7437 0.6710 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.9274 0.5547 0.3482 34 1 5.0450 1.7291 -1.4899 35 1 3.3677 1.8319 -2.1809 36 1 2.8688 3.8642 -0.9027 37 1 5.0958 5.0993 -0.2285 38 1 5.9304 3.7838 -1.0896 39 1 6.4255 6.1724 -2.2874 40 1 4.5137 4.8180 -5.0323 41 1 5.3388 5.8933 -6.1860 42 1 6.6056 3.9156 -5.7498 43 1 7.5384 6.9335 -4.4585 44 1 6.4408 7.9611 -5.4122 45 1 7.4313 9.3087 -3.6237 46 1 6.9245 8.1146 -2.4012 47 1 7.8590 11.4464 -1.6591 48 1 3.2749 9.0178 -3.1213 49 1 4.2135 7.9250 -2.0736 50 1 3.9882 7.7892 -5.1159 51 1 3.3000 6.6364 -3.9463 52 1 3.2608 3.1562 1.4103 53 1 4.9696 2.6621 1.0403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717352198.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:39 Heat of formation + Delta-G solvation = -117.825729 kcal Electronic energy + Delta-G solvation = -31495.613767 eV Core-core repulsion = 27367.542201 eV Total energy + Delta-G solvation = -4128.071566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.56294 -40.47080 -38.84913 -37.44110 -37.14713 -35.53325 -33.72254 -32.41947 -31.84127 -31.63274 -30.15195 -28.31166 -26.58598 -25.63372 -24.51386 -23.93151 -23.71353 -22.59971 -21.53569 -20.36889 -20.11201 -18.82203 -18.19696 -17.91070 -17.48272 -16.85507 -16.66181 -16.47982 -16.36717 -16.06448 -15.72699 -15.61385 -15.27826 -14.98975 -14.71435 -14.56573 -14.44174 -14.04663 -13.93602 -13.77371 -13.31507 -13.27267 -13.19915 -13.11867 -12.93019 -12.85911 -12.67173 -12.57683 -12.32217 -12.27864 -12.09830 -11.97704 -11.87674 -11.74053 -11.43577 -11.41386 -11.26512 -10.98319 -10.95920 -10.55037 -10.36236 -10.26020 -9.81526 -8.51044 -7.87726 -5.45400 1.46872 1.48067 1.54844 1.87119 2.37331 2.49792 2.69967 3.26737 3.33035 3.60473 3.71736 3.72589 3.83189 3.90236 3.97144 4.03453 4.17289 4.20371 4.29210 4.32023 4.44633 4.45492 4.50329 4.52925 4.65254 4.67127 4.68208 4.71258 4.76154 4.81018 4.84462 4.92518 4.94197 4.96460 5.02803 5.05561 5.15258 5.20087 5.22151 5.25618 5.28052 5.36310 5.45178 5.52799 5.64900 5.71344 5.77526 6.40973 6.44919 6.78633 6.90682 7.18434 7.46540 7.83326 8.41390 9.17184 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016458 B = 0.002537 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.854298 B =11034.882842 C =11737.330696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.395 6.395 4 C 0.063 3.937 5 C -0.147 4.147 6 C -0.087 4.087 7 C -0.127 4.127 8 C 0.513 3.487 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.195 3.805 12 C 0.078 3.922 13 O -0.574 6.574 14 C -0.126 4.126 15 C 0.186 3.814 16 N -0.605 5.605 17 C -0.273 4.273 18 H 0.056 0.944 19 C -0.037 4.037 20 N -0.928 5.928 21 Si 0.967 3.033 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.158 3.842 26 C -0.132 4.132 27 C -0.128 4.128 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.403 0.597 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.391 0.609 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.009 0.991 47 H 0.252 0.748 48 H 0.042 0.958 49 H 0.007 0.993 50 H 0.062 0.938 51 H 0.075 0.925 52 H 0.068 0.932 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 -23.348 2.062 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.315 6.315 4 C 0.005 3.995 5 C -0.184 4.184 6 C -0.106 4.106 7 C -0.167 4.167 8 C 0.302 3.698 9 O -0.456 6.456 10 N -0.353 5.353 11 C 0.108 3.892 12 C -0.001 4.001 13 O -0.381 6.381 14 C -0.166 4.166 15 C 0.061 3.939 16 N -0.329 5.329 17 C -0.403 4.403 18 H 0.073 0.927 19 C -0.234 4.234 20 N -0.572 5.572 21 Si 0.795 3.205 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.032 3.968 26 C -0.172 4.172 27 C -0.165 4.165 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.238 0.762 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.240 0.760 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.025 0.975 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.087 0.913 53 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.059 -22.857 2.177 23.317 hybrid contribution 0.261 1.015 -0.413 1.127 sum -3.797 -21.842 1.765 22.240 Atomic orbital electron populations 1.21779 0.93392 1.03335 1.02380 1.22703 0.96029 0.82956 1.00875 1.87897 1.20935 1.27965 1.94688 1.23094 0.81069 0.98721 0.96590 1.23493 1.01720 0.95912 0.97303 1.22108 0.97345 0.94124 0.97026 1.21737 1.01191 0.99789 0.93936 1.21098 0.82250 0.78535 0.87936 1.90575 1.28092 1.65350 1.61569 1.45981 1.26623 1.43745 1.18994 1.20127 0.95338 0.91065 0.82639 1.22425 0.87820 0.92504 0.97351 1.86421 1.42024 1.47438 1.62171 1.22229 0.97455 0.96593 1.00307 1.20484 0.87579 0.92276 0.93573 1.44136 1.02198 1.02095 1.84476 1.19326 1.09523 0.82873 1.28578 0.92676 1.26048 0.98723 1.02103 0.96540 1.70075 1.15939 1.35447 1.35722 0.85370 0.76984 0.80430 0.77742 1.20405 1.21668 1.20257 1.20784 0.89779 0.91542 0.94705 1.22220 0.97402 0.97573 0.99989 1.23300 1.02680 0.94711 0.95848 0.93055 0.88928 0.92324 0.92934 0.91851 0.88711 0.87735 0.93185 0.91528 0.88222 0.86532 0.76189 0.93053 0.92551 0.76026 0.90585 0.91873 0.93361 0.97345 0.93895 0.93934 0.97497 0.91941 0.90619 0.91307 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.80 6.50 71.98 0.47 1.26 16 3 O -0.40 -8.91 10.28 -148.98 -1.53 -10.44 16 4 C 0.06 1.15 4.36 31.12 0.14 1.28 16 5 C -0.15 -3.03 7.47 31.12 0.23 -2.79 16 6 C -0.09 -2.04 3.09 -10.27 -0.03 -2.07 16 7 C -0.13 -2.90 5.54 29.85 0.17 -2.74 16 8 C 0.51 15.93 7.24 87.66 0.63 16.57 16 9 O -0.58 -21.08 12.05 -3.05 -0.04 -21.11 16 10 N -0.70 -22.49 3.86 -422.80 -1.63 -24.13 16 11 C 0.19 6.65 0.44 3.63 0.00 6.65 16 12 C 0.08 2.28 5.63 71.98 0.41 2.68 16 13 O -0.57 -14.77 12.94 -148.98 -1.93 -16.70 16 14 C -0.13 -4.71 4.87 30.66 0.15 -4.56 16 15 C 0.19 8.71 4.93 86.35 0.43 9.14 16 16 N -0.61 -30.70 2.95 -699.16 -2.07 -32.76 16 17 C -0.27 -15.19 9.51 84.03 0.80 -14.39 16 18 H 0.06 3.05 7.83 -2.91 -0.02 3.03 16 19 C -0.04 -2.08 5.13 84.86 0.43 -1.65 16 20 N -0.93 -53.78 11.29 21.65 0.24 -53.53 16 21 Si 0.97 44.79 29.56 68.60 2.03 46.82 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 C 0.16 7.08 6.26 86.36 0.54 7.62 16 26 C -0.13 -5.03 4.67 30.67 0.14 -4.89 16 27 C -0.13 -2.27 7.47 31.12 0.23 -2.04 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.23 7.88 -2.39 -0.02 1.22 16 34 H 0.10 1.72 7.90 -2.39 -0.02 1.70 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 2.06 7.67 -2.39 -0.02 2.04 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.12 2.05 7.84 -2.38 -0.02 2.03 16 39 H 0.40 12.51 7.26 -92.71 -0.67 11.83 16 40 H 0.05 1.62 6.45 -2.39 -0.02 1.61 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.39 6.35 9.12 -74.06 -0.68 5.68 16 43 H 0.08 2.62 7.80 -2.39 -0.02 2.60 16 44 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.05 2.57 6.48 -2.39 -0.02 2.55 16 46 H 0.01 0.41 6.93 -2.39 -0.02 0.39 16 47 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16 48 H 0.04 1.94 7.93 -2.39 -0.02 1.92 16 49 H 0.01 0.33 7.74 -2.39 -0.02 0.31 16 50 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 51 H 0.08 2.94 6.09 -2.39 -0.01 2.93 16 52 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -70.04 408.54 0.11 -69.93 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.45 Total: 33.25 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 5.48 Total: 8.68 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -3.45 Total: -110.42 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -3.50 Total: -48.25 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.04 0.11 -69.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717352198.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.900 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds