Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47314 * 2 1 4 4 C 1.42895 * 113.99959 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46956 * 176.88252 * 5 4 3 7 7 C 1.50692 * 112.85384 * 300.95650 * 6 5 4 8 8 O 1.21280 * 119.99948 * 120.61699 * 7 6 5 9 9 N 1.34780 * 119.99898 * 300.61355 * 7 6 5 10 10 C 1.46503 * 119.99831 * 174.46341 * 9 7 6 11 11 C 1.53001 * 112.94430 * 291.14336 * 10 9 7 12 12 C 1.52994 * 109.47384 * 305.19435 * 11 10 9 13 13 O 1.42900 * 109.47339 * 184.39010 * 12 11 10 14 14 C 1.53946 * 113.74104 * 159.40727 * 10 9 7 15 15 N 1.47580 * 86.11767 * 222.05053 * 14 10 9 16 16 C 1.36932 * 134.48902 * 204.63937 * 15 14 10 17 17 H 1.07998 * 119.99616 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.00169 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00100 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99876 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47118 * 60.00386 * 20 18 16 22 22 H 1.48497 * 109.47023 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47570 * 300.00362 * 20 18 16 24 24 C 1.47578 * 91.01389 * 24.64208 * 15 14 10 25 25 C 1.53780 * 113.61076 * 169.75635 * 6 5 4 26 26 C 1.53953 * 87.02178 * 220.04916 * 25 6 5 27 27 C 1.53785 * 87.10958 * 25.36742 * 26 25 6 28 28 H 1.09003 * 109.46534 * 60.00206 * 1 2 3 29 29 H 1.08991 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47246 * 300.00814 * 1 2 3 31 31 H 1.08994 * 109.47709 * 239.99433 * 2 1 3 32 32 H 1.09003 * 109.47030 * 119.99609 * 2 1 3 33 33 H 1.08995 * 109.47700 * 299.99799 * 4 3 2 34 34 H 1.09000 * 109.47533 * 60.00069 * 4 3 2 35 35 H 1.08997 * 109.46628 * 296.88485 * 5 4 3 36 36 H 1.09001 * 109.46383 * 56.88507 * 5 4 3 37 37 H 0.96993 * 119.99799 * 354.47287 * 9 7 6 38 38 H 1.09002 * 109.47410 * 65.20059 * 11 10 9 39 39 H 1.09005 * 109.46666 * 185.19778 * 11 10 9 40 40 H 1.08998 * 109.47539 * 304.39178 * 12 11 10 41 41 H 1.09003 * 109.46845 * 64.39287 * 12 11 10 42 42 H 0.96700 * 113.99766 * 180.02562 * 13 12 11 43 43 H 1.09000 * 113.76951 * 336.35802 * 14 10 9 44 44 H 1.09000 * 113.76550 * 107.74668 * 14 10 9 45 45 H 0.96997 * 119.99678 * 179.97438 * 19 18 16 46 46 H 1.08998 * 113.76572 * 221.05979 * 24 15 14 47 47 H 1.08999 * 113.87224 * 89.67312 * 24 15 14 48 48 H 1.08999 * 113.61761 * 334.57088 * 25 6 5 49 49 H 1.09006 * 113.60996 * 105.47035 * 25 6 5 50 50 H 1.08999 * 113.53904 * 270.81321 * 26 25 6 51 51 H 1.09001 * 113.74187 * 139.94402 * 26 25 6 52 52 H 1.08998 * 113.61063 * 220.08833 * 27 26 25 53 53 H 1.08998 * 113.69137 * 89.19374 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9384 -0.0001 6 6 5.3486 3.0597 0.0790 7 6 5.9241 2.4116 1.3116 8 8 6.7329 1.5143 1.2035 9 7 5.5401 2.8290 2.5343 10 6 6.0050 2.1210 3.7296 11 6 5.4060 0.7195 3.8635 12 6 3.8795 0.8107 3.8167 13 8 3.3177 -0.4834 4.0439 14 6 5.9216 2.9591 5.0182 15 7 7.2466 2.3995 5.3486 16 6 7.9347 2.1856 6.5130 17 1 8.9213 1.7472 6.4844 18 6 7.3637 2.5311 7.7302 19 7 6.1607 3.0640 7.7651 20 14 8.3021 2.2386 9.3186 21 1 9.5749 3.0031 9.2896 22 1 7.4795 2.6896 10.4697 23 1 8.5978 0.7903 9.4594 24 6 7.5321 2.1631 3.9201 25 6 5.8663 4.4870 -0.1654 26 6 7.0102 3.8475 -0.9733 27 6 6.0667 2.6585 -1.2204 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8333 0.9767 0.8908 34 1 3.8341 0.9764 -0.8891 35 1 3.4706 3.4087 -0.9171 36 1 3.3763 3.4346 0.8602 37 1 4.9558 3.5981 2.6227 38 1 5.7579 0.0939 3.0431 39 1 5.7149 0.2815 4.8127 40 1 3.5327 1.4979 4.5885 41 1 3.5671 1.1757 2.8382 42 1 2.3510 -0.5009 4.0277 43 1 5.9301 4.0350 4.8438 44 1 5.1295 2.6432 5.6971 45 1 5.7616 3.3051 8.6156 46 1 8.0259 1.2118 3.7224 47 1 8.0140 3.0042 3.4215 48 1 5.1945 5.0979 -0.7683 49 1 6.1999 4.9916 0.7414 50 1 7.8817 3.5952 -0.3692 51 1 7.2677 4.3962 -1.8793 52 1 6.5619 1.6892 -1.1642 53 1 5.4492 2.7674 -2.1120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717504163.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -91.358233 kcal Electronic energy + Delta-G solvation = -32372.943684 eV Core-core repulsion = 28246.019835 eV Total energy + Delta-G solvation = -4126.923849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.06632 -40.44832 -38.92530 -38.02627 -37.74540 -35.31983 -33.89477 -33.26929 -31.95760 -31.17027 -29.05619 -26.90479 -26.88335 -26.30040 -25.17169 -23.69564 -23.65379 -23.13914 -22.21554 -20.20328 -20.04412 -18.79406 -18.44156 -17.82216 -17.46166 -17.29859 -17.10918 -16.72522 -16.24319 -16.20251 -15.82782 -15.60574 -15.46951 -15.15038 -14.97153 -14.82385 -14.41717 -14.22549 -13.69340 -13.51981 -13.38642 -13.32427 -13.22238 -13.18420 -12.94534 -12.89170 -12.78007 -12.60729 -12.38636 -12.25426 -12.09756 -12.03827 -11.95272 -11.76380 -11.74081 -11.40691 -11.21474 -11.14279 -10.97883 -10.90315 -10.55832 -10.52160 -10.06097 -8.98509 -7.94562 -5.28091 1.44579 1.47750 1.53649 1.66771 2.09150 2.47961 2.64231 3.09774 3.24618 3.35396 3.47064 3.55275 3.63244 3.78223 3.94012 4.01501 4.03925 4.13159 4.18710 4.21533 4.26112 4.27647 4.38330 4.46600 4.51636 4.53817 4.60651 4.67695 4.69026 4.82536 4.84232 4.87299 4.91888 4.94301 4.98254 5.04906 5.07182 5.09307 5.10528 5.14339 5.18893 5.20368 5.28147 5.30163 5.44693 5.51829 5.69874 5.87555 6.23242 6.63325 6.84196 6.88485 7.32897 7.54790 8.48092 9.21870 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.003618 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.574693 B = 7737.963994 C = 9449.131096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.399 6.399 4 C 0.062 3.938 5 C -0.089 4.089 6 C -0.105 4.105 7 C 0.536 3.464 8 O -0.570 6.570 9 N -0.704 5.704 10 C 0.156 3.844 11 C -0.086 4.086 12 C 0.094 3.906 13 O -0.589 6.589 14 C 0.173 3.827 15 N -0.630 5.630 16 C -0.242 4.242 17 H 0.078 0.922 18 C -0.056 4.056 19 N -0.945 5.945 20 Si 0.978 3.022 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.131 3.869 25 C -0.111 4.111 26 C -0.143 4.143 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.412 0.588 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.395 0.605 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.252 0.748 46 H 0.037 0.963 47 H 0.038 0.962 48 H 0.124 0.876 49 H 0.067 0.933 50 H 0.054 0.946 51 H 0.092 0.908 52 H 0.056 0.944 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 1.255 -20.875 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 O -0.319 6.319 4 C -0.015 4.015 5 C -0.126 4.126 6 C -0.108 4.108 7 C 0.324 3.676 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.068 3.932 11 C -0.124 4.124 12 C 0.016 3.984 13 O -0.397 6.397 14 C 0.047 3.953 15 N -0.357 5.357 16 C -0.370 4.370 17 H 0.096 0.904 18 C -0.250 4.250 19 N -0.593 5.593 20 Si 0.806 3.194 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.206 1.206 24 C 0.005 3.995 25 C -0.148 4.148 26 C -0.181 4.181 27 C -0.153 4.153 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.248 0.752 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.244 0.756 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.142 0.858 49 H 0.085 0.915 50 H 0.073 0.927 51 H 0.111 0.889 52 H 0.075 0.925 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.624 0.600 -20.554 23.145 hybrid contribution 0.296 -0.030 1.411 1.442 sum -10.328 0.570 -19.143 21.758 Atomic orbital electron populations 1.21735 0.92291 1.03293 1.02979 1.22626 0.96678 0.83170 1.00299 1.87818 1.21058 1.27489 1.95497 1.22501 0.81043 0.98219 0.99739 1.21414 0.91133 0.94687 1.05400 1.21969 0.95766 0.99860 0.93188 1.20504 0.80337 0.82219 0.84582 1.90676 1.34637 1.32408 1.87078 1.45922 1.51725 1.33363 1.04567 1.22181 0.93828 0.92447 0.84716 1.21158 0.95003 0.94885 1.01402 1.21957 0.92419 0.84392 0.99588 1.86438 1.26834 1.30822 1.95640 1.22403 0.88926 0.94263 0.89675 1.45952 1.17378 1.72041 1.00371 1.19270 0.99092 1.35034 0.83564 0.90423 1.25545 0.98002 1.01081 1.00323 1.69931 1.16013 1.48200 1.25192 0.85174 0.77571 0.77910 0.78778 1.20443 1.21433 1.20559 1.22785 0.94660 0.97797 0.84291 1.23040 0.97923 0.92749 1.01113 1.22830 0.96672 0.97543 1.01029 1.22914 0.97866 0.98968 0.95562 0.91709 0.89546 0.92134 0.92953 0.93864 0.95411 0.92935 0.87562 0.89994 0.75177 0.92381 0.92870 0.93525 0.92330 0.75577 0.94927 0.92348 0.93932 0.94489 0.94473 0.85752 0.91454 0.92702 0.88945 0.92475 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.86 6.66 71.98 0.48 1.34 16 3 O -0.40 -8.37 10.34 -148.98 -1.54 -9.91 16 4 C 0.06 1.28 5.65 71.99 0.41 1.68 16 5 C -0.09 -1.46 4.96 30.60 0.15 -1.31 16 6 C -0.10 -2.05 0.80 -52.40 -0.04 -2.09 16 7 C 0.54 15.50 5.06 87.65 0.44 15.94 16 8 O -0.57 -21.29 14.41 -3.03 -0.04 -21.33 16 9 N -0.70 -20.65 4.55 -427.55 -1.95 -22.60 16 10 C 0.16 6.02 0.68 5.36 0.00 6.02 16 11 C -0.09 -3.39 4.89 30.59 0.15 -3.24 16 12 C 0.09 3.02 6.77 71.98 0.49 3.51 16 13 O -0.59 -18.28 13.66 -148.98 -2.04 -20.32 16 14 C 0.17 7.98 6.67 86.48 0.58 8.56 16 15 N -0.63 -33.36 3.54 -716.15 -2.54 -35.89 16 16 C -0.24 -13.95 10.70 84.04 0.90 -13.05 16 17 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 18 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 19 N -0.95 -55.77 11.38 21.65 0.25 -55.52 16 20 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 24 C 0.13 5.96 7.27 86.48 0.63 6.59 16 25 C -0.11 -1.71 7.24 31.18 0.23 -1.49 16 26 C -0.14 -2.58 7.81 31.18 0.24 -2.34 16 27 C -0.12 -2.13 6.72 31.12 0.21 -1.92 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.03 0.72 5.67 -2.39 -0.01 0.70 16 34 H 0.05 1.05 7.93 -2.39 -0.02 1.03 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 37 H 0.41 9.79 8.62 -92.71 -0.80 8.99 16 38 H 0.06 2.40 7.42 -2.39 -0.02 2.38 16 39 H 0.05 2.51 8.02 -2.38 -0.02 2.49 16 40 H 0.05 1.53 7.52 -2.39 -0.02 1.51 16 41 H 0.06 1.65 6.21 -2.39 -0.01 1.63 16 42 H 0.39 7.88 9.12 -74.06 -0.68 7.20 16 43 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 2.97 6.61 -2.39 -0.02 2.96 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.12 1.18 8.10 -2.39 -0.02 1.16 16 49 H 0.07 1.18 8.09 -2.38 -0.02 1.16 16 50 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.06 1.38 7.35 -2.39 -0.02 1.36 16 53 H 0.12 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -73.71 418.89 -0.33 -74.04 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.57 Total: 29.10 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.07 Total: 14.26 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -4.24 Total: -114.02 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -3.62 Total: -51.56 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -73.71 -0.33 -74.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717504163.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.316 kcal (2) G-P(sol) polarization free energy of solvation -73.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds