Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.46895 * 2 1 4 4 C 1.42898 * 114.00266 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46848 * 29.99990 * 4 3 2 6 6 C 1.50699 * 109.47207 * 270.00078 * 4 3 2 7 7 O 1.21280 * 119.99834 * 353.96327 * 6 4 3 8 8 N 1.34776 * 120.00138 * 173.96005 * 6 4 3 9 9 C 1.46499 * 120.00060 * 185.29684 * 8 6 4 10 10 C 1.53000 * 109.47025 * 174.88919 * 9 8 6 11 11 H 1.08996 * 109.71257 * 300.23554 * 10 9 8 12 12 C 1.52885 * 109.61698 * 179.97438 * 10 9 8 13 13 O 1.42961 * 109.29397 * 188.11806 * 12 10 9 14 14 C 1.42954 * 114.16736 * 62.45311 * 13 12 10 15 15 C 1.53299 * 109.22132 * 297.41324 * 14 13 12 16 16 N 1.47150 * 108.38530 * 52.30575 * 15 14 13 17 17 C 1.36933 * 120.98396 * 129.43757 * 16 15 14 18 18 H 1.07993 * 120.00198 * 212.10345 * 17 16 15 19 19 C 1.38815 * 119.99395 * 32.10697 * 17 16 15 20 20 N 1.31612 * 120.00586 * 4.78162 * 19 17 16 21 21 Si 1.86804 * 119.99549 * 184.78652 * 19 17 16 22 22 H 1.48507 * 109.47093 * 271.63543 * 21 19 17 23 23 H 1.48496 * 109.47222 * 31.63541 * 21 19 17 24 24 H 1.48498 * 109.47342 * 151.63739 * 21 19 17 25 25 C 1.53001 * 109.47372 * 149.99693 * 4 3 2 26 26 C 1.54267 * 110.02812 * 58.69513 * 25 4 3 27 27 C 1.54897 * 104.19320 * 217.10412 * 26 25 4 28 28 C 1.54886 * 102.74794 * 37.94009 * 27 26 25 29 29 C 1.53878 * 110.03305 * 301.52590 * 25 4 3 30 30 H 1.08997 * 109.47192 * 60.00478 * 1 2 3 31 31 H 1.09008 * 109.46902 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47174 * 299.99949 * 1 2 3 33 33 H 1.08999 * 109.47174 * 240.00051 * 2 1 3 34 34 H 1.08997 * 109.47192 * 119.99522 * 2 1 3 35 35 H 0.96998 * 119.99830 * 5.31095 * 8 6 4 36 36 H 1.09005 * 109.46473 * 54.89353 * 9 8 6 37 37 H 1.08997 * 109.47465 * 294.89300 * 9 8 6 38 38 H 1.08993 * 109.58143 * 68.10272 * 12 10 9 39 39 H 1.08995 * 109.40908 * 308.02481 * 12 10 9 40 40 H 1.09003 * 109.51137 * 177.49052 * 14 13 12 41 41 H 1.09002 * 109.56029 * 57.36572 * 14 13 12 42 42 H 1.09002 * 109.68132 * 292.57986 * 15 14 13 43 43 H 1.09001 * 109.71201 * 172.04690 * 15 14 13 44 44 H 0.97000 * 120.00192 * 179.97438 * 20 19 17 45 45 H 1.08997 * 110.01610 * 180.13326 * 25 4 3 46 46 H 1.08996 * 110.48649 * 335.77897 * 26 25 4 47 47 H 1.08995 * 110.48577 * 98.42851 * 26 25 4 48 48 H 1.08999 * 110.75304 * 279.63255 * 27 26 25 49 49 H 1.08994 * 110.75549 * 156.25859 * 27 26 25 50 50 H 1.09004 * 110.49108 * 203.37845 * 28 27 26 51 51 H 1.09004 * 110.48723 * 80.73503 * 28 27 26 52 52 H 1.08997 * 110.02949 * 238.56760 * 29 25 4 53 53 H 1.08992 * 110.03065 * 0.02562 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9322 1.4997 1.4200 7 8 3.1437 1.5478 2.3402 8 7 5.2568 1.4815 1.6679 9 6 5.7428 1.4026 3.0477 10 6 7.2670 1.2691 3.0446 11 1 7.5560 0.3678 2.5042 12 6 7.7779 1.1872 4.4833 13 8 9.2060 1.2534 4.4819 14 6 9.7347 2.4766 3.9643 15 6 9.3246 2.6216 2.4943 16 7 7.8664 2.4483 2.3999 17 6 7.0896 3.3602 1.7367 18 1 6.0795 3.5514 2.0677 19 6 7.6005 4.0390 0.6389 20 7 8.7961 3.7393 0.1777 21 14 6.5908 5.3782 -0.1839 22 1 5.7256 4.7743 -1.2290 23 1 5.7429 6.0531 0.8313 24 1 7.5011 6.3715 -0.8081 25 6 3.8402 2.7459 -0.7219 26 6 3.2081 3.9677 -0.0236 27 6 2.8457 4.9245 -1.1866 28 6 2.3613 3.9522 -2.2907 29 6 3.3018 2.7360 -2.1633 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 5.8884 1.5208 0.9327 36 1 5.3030 0.5345 3.5386 37 1 5.4584 2.3071 3.5854 38 1 7.4574 0.2469 4.9317 39 1 7.3754 2.0208 5.0586 40 1 10.8220 2.4639 4.0394 41 1 9.3400 3.3159 4.5368 42 1 9.8244 1.8591 1.8968 43 1 9.6009 3.6116 2.1315 44 1 9.1529 4.2133 -0.5897 45 1 4.9261 2.8398 -0.7295 46 1 2.3114 3.6737 0.5219 47 1 3.9270 4.4379 0.6472 48 1 3.7235 5.4790 -1.5183 49 1 2.0462 5.6044 -0.8926 50 1 2.4621 4.4110 -3.2743 51 1 1.3278 3.6556 -2.1113 52 1 4.1263 2.8260 -2.8705 53 1 2.7485 1.8155 -2.3488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724772824.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -128.067315 kcal Electronic energy + Delta-G solvation = -33147.011800 eV Core-core repulsion = 29018.496126 eV Total energy + Delta-G solvation = -4128.515674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40983 -40.19092 -39.02474 -37.93390 -36.88262 -35.28346 -33.50201 -32.71931 -32.08888 -30.66227 -29.65661 -28.99976 -27.59027 -25.72687 -25.22990 -23.76188 -23.30722 -21.94377 -21.43066 -21.23942 -20.58195 -19.01104 -18.11236 -17.91111 -17.57976 -17.15766 -16.87697 -16.49961 -16.30148 -16.10339 -15.97012 -15.85090 -15.40248 -15.11492 -15.04841 -14.81095 -14.38912 -14.30273 -14.12357 -13.87047 -13.50228 -13.15857 -13.10359 -12.80872 -12.78793 -12.67598 -12.48949 -12.35806 -12.28753 -12.17615 -12.00986 -11.99164 -11.92823 -11.81768 -11.62722 -11.50666 -11.39189 -11.30152 -11.27204 -10.70382 -10.52748 -10.15846 -9.86541 -8.60151 -7.86096 -5.39422 1.42814 1.47526 1.52319 1.64539 2.19331 2.45595 2.74666 3.02524 3.30138 3.43264 3.55440 3.66329 3.74909 3.89037 4.02418 4.05626 4.19524 4.20687 4.27761 4.33602 4.38614 4.47023 4.49408 4.54690 4.58285 4.62667 4.63203 4.65689 4.68333 4.73294 4.75030 4.84000 4.88679 4.95770 5.00062 5.05338 5.06288 5.12084 5.18646 5.27009 5.28684 5.32503 5.43388 5.47789 5.57114 5.67444 5.69729 6.12600 6.29034 6.38976 6.70986 7.12113 7.32319 7.76768 8.33157 9.17226 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.004883 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.547212 B = 5732.764641 C = 7598.733124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 O -0.362 6.362 4 C 0.091 3.909 5 H 0.103 0.897 6 C 0.486 3.514 7 O -0.579 6.579 8 N -0.696 5.696 9 C 0.143 3.857 10 C 0.128 3.872 11 H 0.039 0.961 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.044 3.956 15 C 0.148 3.852 16 N -0.606 5.606 17 C -0.241 4.241 18 H 0.066 0.934 19 C -0.024 4.024 20 N -0.925 5.925 21 Si 0.924 3.076 22 H -0.241 1.241 23 H -0.290 1.290 24 H -0.309 1.309 25 C -0.087 4.087 26 C -0.117 4.117 27 C -0.129 4.129 28 C -0.110 4.110 29 C -0.109 4.109 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.117 0.883 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.040 0.960 42 H 0.007 0.993 43 H 0.071 0.929 44 H 0.250 0.750 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.074 0.926 52 H 0.067 0.933 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 -6.391 -3.376 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 O -0.280 6.280 4 C 0.030 3.970 5 H 0.121 0.879 6 C 0.272 3.728 7 O -0.460 6.460 8 N -0.349 5.349 9 C 0.018 3.982 10 C 0.021 3.979 11 H 0.057 0.943 12 C -0.022 4.022 13 O -0.316 6.316 14 C -0.033 4.033 15 C 0.023 3.977 16 N -0.332 5.332 17 C -0.371 4.371 18 H 0.083 0.917 19 C -0.221 4.221 20 N -0.571 5.571 21 Si 0.754 3.246 22 H -0.165 1.165 23 H -0.216 1.216 24 H -0.237 1.237 25 C -0.106 4.106 26 C -0.154 4.154 27 C -0.167 4.167 28 C -0.147 4.147 29 C -0.146 4.146 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.250 0.750 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.135 0.865 39 H 0.064 0.936 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.089 0.911 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.086 0.914 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.649 -6.318 -2.810 12.697 hybrid contribution 0.459 1.190 -0.532 1.382 sum -10.190 -5.128 -3.343 11.887 Atomic orbital electron populations 1.21691 0.92262 1.03327 1.02613 1.22768 0.96946 0.83029 1.00241 1.87973 1.18017 1.27669 1.94296 1.21947 0.83550 1.00549 0.90965 0.87893 1.21728 0.82405 0.75882 0.92772 1.90615 1.56274 1.51738 1.47379 1.46165 1.06633 1.72292 1.09797 1.21079 0.92911 1.00672 0.83530 1.21448 0.91437 0.90602 0.94387 0.94303 1.22907 0.81123 1.02656 0.95482 1.87803 1.20864 1.38846 1.84046 1.23242 0.98966 0.85824 0.95311 1.21294 0.83808 1.00614 0.92020 1.44265 1.02967 1.22966 1.62991 1.19214 0.97084 1.15293 1.05478 0.91672 1.25572 0.97606 1.01577 0.97334 1.70058 1.17648 1.43511 1.25843 0.86080 0.78432 0.80051 0.80050 1.16533 1.21629 1.23673 1.21952 1.00191 0.92168 0.96296 1.22298 0.99796 0.95592 0.97756 1.22578 1.00598 0.97758 0.95737 1.22257 0.99453 0.94753 0.98240 1.22089 0.99158 0.99921 0.93434 0.91285 0.89022 0.93324 0.91284 0.94716 0.74989 0.90335 0.93765 0.86484 0.93587 0.87825 0.94116 0.97454 0.91054 0.94081 0.90354 0.91442 0.94739 0.92791 0.90703 0.90437 0.90684 0.91431 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.05 1.07 6.46 71.98 0.46 1.54 16 3 O -0.36 -10.65 7.98 -130.01 -1.04 -11.69 16 4 C 0.09 2.77 2.07 29.85 0.06 2.83 16 5 H 0.10 2.61 7.79 -2.39 -0.02 2.59 16 6 C 0.49 17.85 6.47 87.66 0.57 18.42 16 7 O -0.58 -24.86 16.52 15.94 0.26 -24.60 16 8 N -0.70 -25.71 3.91 -463.06 -1.81 -27.52 16 9 C 0.14 5.18 4.44 86.38 0.38 5.57 16 10 C 0.13 4.81 3.21 44.83 0.14 4.96 16 11 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 12 C 0.06 1.89 6.27 71.94 0.45 2.34 16 13 O -0.40 -14.61 10.74 -148.98 -1.60 -16.21 16 14 C 0.04 1.66 6.98 72.08 0.50 2.16 16 15 C 0.15 6.70 5.37 86.36 0.46 7.17 16 16 N -0.61 -27.43 3.04 -674.50 -2.05 -29.49 16 17 C -0.24 -11.71 6.94 84.03 0.58 -11.13 16 18 H 0.07 3.29 5.83 -2.91 -0.02 3.27 16 19 C -0.02 -1.22 5.18 84.86 0.44 -0.78 16 20 N -0.92 -49.48 10.87 21.65 0.24 -49.25 16 21 Si 0.92 41.59 26.53 68.60 1.82 43.41 16 22 H -0.24 -9.78 5.40 99.48 0.54 -9.24 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.31 -14.58 7.11 99.48 0.71 -13.88 16 25 C -0.09 -2.73 2.65 -10.07 -0.03 -2.76 16 26 C -0.12 -4.02 5.29 31.67 0.17 -3.85 16 27 C -0.13 -3.74 6.91 31.89 0.22 -3.52 16 28 C -0.11 -2.60 6.83 31.67 0.22 -2.38 16 29 C -0.11 -2.72 6.21 31.32 0.19 -2.53 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.41 15.95 6.82 -92.71 -0.63 15.32 16 36 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.04 1.80 7.55 -2.39 -0.02 1.78 16 38 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 40 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.07 3.62 6.19 -2.39 -0.01 3.61 16 44 H 0.25 13.23 8.31 -92.71 -0.77 12.45 16 45 H 0.08 2.79 6.36 -2.39 -0.02 2.77 16 46 H 0.07 2.45 7.18 -2.39 -0.02 2.43 16 47 H 0.03 1.37 6.51 -2.39 -0.02 1.35 16 48 H 0.05 1.66 6.84 -2.39 -0.02 1.64 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 51 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 52 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.08 1.80 7.37 -2.39 -0.02 1.78 16 Total: -1.00 -61.52 397.72 1.48 -60.04 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: 0.09 Total: 39.19 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 5.57 Total: 16.10 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.63 Total: -106.25 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -2.37 Total: -52.49 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.82 Total: 43.41 kcal Total: -61.52 1.48 -60.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724772824.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.027 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds