Wall clock time and date at job start Sat Apr 11 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42895 * 109.47080 * 2 1 4 4 C 1.42902 * 114.00052 * 184.96669 * 3 2 1 5 5 H 1.09008 * 109.46878 * 334.11797 * 4 3 2 6 6 C 1.50696 * 109.47429 * 94.11562 * 4 3 2 7 7 O 1.21278 * 119.99999 * 5.00277 * 6 4 3 8 8 N 1.34782 * 120.00148 * 185.00510 * 6 4 3 9 9 C 1.46501 * 119.99763 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.46840 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.68049 * 299.76984 * 10 9 8 12 12 C 1.53293 * 109.68123 * 179.25264 * 10 9 8 13 13 O 1.42976 * 109.21285 * 188.01202 * 12 10 9 14 14 C 1.42962 * 114.20061 * 62.52935 * 13 12 10 15 15 C 1.53300 * 109.21846 * 297.43013 * 14 13 12 16 16 N 1.47151 * 109.67873 * 60.28535 * 10 9 8 17 17 C 1.36935 * 120.98599 * 350.23800 * 16 10 9 18 18 H 1.08003 * 119.99456 * 31.85992 * 17 16 10 19 19 C 1.38812 * 119.99961 * 211.85566 * 17 16 10 20 20 N 1.31614 * 120.00035 * 10.09838 * 19 17 16 21 21 Si 1.86801 * 119.99714 * 190.09564 * 19 17 16 22 22 H 1.48500 * 109.47149 * 90.00260 * 21 19 17 23 23 H 1.48506 * 109.46847 * 210.00076 * 21 19 17 24 24 H 1.48503 * 109.47230 * 330.00000 * 21 19 17 25 25 C 1.52994 * 109.47356 * 214.12000 * 4 3 2 26 26 C 1.54892 * 110.48727 * 305.78605 * 25 4 3 27 27 C 1.55229 * 102.58959 * 156.67478 * 26 25 4 28 28 C 1.54271 * 104.23621 * 322.08674 * 27 26 25 29 29 C 1.53875 * 106.59552 * 23.60700 * 28 27 26 30 30 H 1.09006 * 109.46850 * 59.99721 * 1 2 3 31 31 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46791 * 300.00232 * 1 2 3 33 33 H 1.08997 * 109.46791 * 239.99768 * 2 1 3 34 34 H 1.08996 * 109.46966 * 120.00236 * 2 1 3 35 35 H 0.96999 * 120.00193 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.47156 * 299.99554 * 9 8 6 37 37 H 1.09001 * 109.47355 * 59.99894 * 9 8 6 38 38 H 1.08994 * 109.51227 * 307.90062 * 12 10 9 39 39 H 1.09003 * 109.51251 * 68.04918 * 12 10 9 40 40 H 1.08999 * 109.51626 * 177.50849 * 14 13 12 41 41 H 1.09002 * 109.55647 * 57.37652 * 14 13 12 42 42 H 1.08995 * 109.68181 * 292.57904 * 15 14 13 43 43 H 1.08997 * 109.71141 * 172.04177 * 15 14 13 44 44 H 0.97004 * 120.00284 * 179.97438 * 20 19 17 45 45 H 1.09003 * 110.43569 * 183.24386 * 25 4 3 46 46 H 1.08997 * 110.75570 * 275.07108 * 26 25 4 47 47 H 1.09001 * 110.75352 * 38.43804 * 26 25 4 48 48 H 1.08999 * 110.47271 * 203.39334 * 27 26 25 49 49 H 1.09001 * 110.58189 * 80.83087 * 27 26 25 50 50 H 1.08995 * 110.02838 * 264.33139 * 28 27 26 51 51 H 1.08996 * 110.03655 * 142.89261 * 28 27 26 52 52 H 1.09001 * 110.03688 * 240.71989 * 29 28 27 53 53 H 1.08996 * 110.03152 * 119.28617 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4263 1.4617 -0.1130 5 1 3.8956 0.5566 0.2726 6 6 3.8019 1.6445 -1.5609 7 8 2.9360 1.7648 -2.4015 8 7 5.1002 1.6742 -1.9218 9 6 5.4653 1.8524 -3.3294 10 6 6.9893 1.8504 -3.4651 11 1 7.4110 2.6674 -2.8795 12 6 7.3766 2.0180 -4.9388 13 8 8.7868 1.8284 -5.0792 14 6 9.2413 0.5220 -4.7180 15 6 8.9495 0.2788 -3.2328 16 7 7.5278 0.5676 -2.9858 17 6 6.7298 -0.3306 -2.3289 18 1 5.6803 -0.4003 -2.5737 19 6 7.2700 -1.1516 -1.3485 20 7 8.4917 -0.9359 -0.9092 21 14 6.2626 -2.5624 -0.6526 22 1 6.5019 -3.7863 -1.4588 23 1 6.6649 -2.8105 0.7553 24 1 4.8203 -2.2119 -0.7009 25 6 3.9066 2.6690 0.6947 26 6 3.1460 3.9474 0.2630 27 6 3.2813 4.8596 1.5117 28 6 3.1517 3.8907 2.7052 29 6 3.5492 2.4979 2.1857 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.7928 1.5783 -1.2495 36 1 5.0466 1.0371 -3.9193 37 1 5.0700 2.8021 -3.6899 38 1 6.8486 1.2782 -5.5403 39 1 7.1081 3.0198 -5.2742 40 1 10.3142 0.4479 -4.8951 41 1 8.7208 -0.2243 -5.3182 42 1 9.5691 0.9376 -2.6243 43 1 9.1619 -0.7603 -2.9817 44 1 8.8691 -1.5093 -0.2238 45 1 4.9812 2.8052 0.5732 46 1 3.6202 4.4043 -0.6055 47 1 2.0987 3.7237 0.0596 48 1 2.4809 5.5992 1.5322 49 1 4.2541 5.3512 1.5235 50 1 2.1226 3.8757 3.0638 51 1 3.8230 4.1953 3.5081 52 1 2.7129 1.8069 2.2922 53 1 4.4134 2.1266 2.7365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724772826.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:56 Heat of formation + Delta-G solvation = -131.696879 kcal Electronic energy + Delta-G solvation = -32659.916556 eV Core-core repulsion = 28531.243493 eV Total energy + Delta-G solvation = -4128.673064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36849 -40.17540 -39.01648 -37.94864 -36.88728 -35.28586 -33.49470 -32.78751 -32.11154 -30.66264 -29.56303 -29.02226 -27.55022 -25.78892 -25.22839 -23.84178 -23.31063 -21.90498 -21.41043 -21.04195 -20.72871 -19.00990 -18.07517 -17.89918 -17.61469 -17.07970 -16.80130 -16.44998 -16.29122 -16.25510 -16.02147 -15.89630 -15.41236 -15.12704 -15.00300 -14.72643 -14.46314 -14.27771 -14.17798 -13.86251 -13.49942 -13.24456 -13.12848 -12.91912 -12.85778 -12.76897 -12.52575 -12.37758 -12.27624 -12.14053 -12.03515 -12.00733 -11.91714 -11.87710 -11.70640 -11.46595 -11.35457 -11.30010 -11.21880 -10.73425 -10.59043 -10.20586 -9.86442 -8.62113 -7.88073 -5.39993 1.37209 1.43852 1.47915 1.65597 2.13423 2.42500 2.73149 3.02413 3.27472 3.42791 3.54013 3.62213 3.80119 3.92271 4.02565 4.03630 4.11335 4.21128 4.27254 4.32494 4.38781 4.41642 4.46770 4.57870 4.58419 4.62040 4.62391 4.65218 4.68897 4.72096 4.75036 4.83070 4.87788 4.98070 4.98936 5.00200 5.10662 5.12956 5.20394 5.26700 5.29385 5.33361 5.47257 5.53785 5.55311 5.63343 5.67556 6.03136 6.28882 6.36740 6.68803 7.09757 7.31356 7.74911 8.32079 9.16081 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.004253 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.714688 B = 6581.781039 C = 7385.185951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 O -0.358 6.358 4 C 0.085 3.915 5 H 0.081 0.919 6 C 0.490 3.510 7 O -0.580 6.580 8 N -0.692 5.692 9 C 0.143 3.857 10 C 0.127 3.873 11 H 0.039 0.961 12 C 0.058 3.942 13 O -0.397 6.397 14 C 0.045 3.955 15 C 0.150 3.850 16 N -0.604 5.604 17 C -0.242 4.242 18 H 0.065 0.935 19 C -0.029 4.029 20 N -0.924 5.924 21 Si 0.939 3.061 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.274 1.274 25 C -0.084 4.084 26 C -0.112 4.112 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.115 4.115 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.061 0.939 35 H 0.411 0.589 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.042 0.958 42 H 0.008 0.992 43 H 0.065 0.935 44 H 0.251 0.749 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.074 0.926 52 H 0.067 0.933 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 6.889 4.293 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 O -0.276 6.276 4 C 0.023 3.977 5 H 0.099 0.901 6 C 0.276 3.724 7 O -0.461 6.461 8 N -0.344 5.344 9 C 0.019 3.981 10 C 0.021 3.979 11 H 0.056 0.944 12 C -0.021 4.021 13 O -0.315 6.315 14 C -0.032 4.032 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.372 4.372 18 H 0.083 0.917 19 C -0.226 4.226 20 N -0.569 5.569 21 Si 0.769 3.231 22 H -0.220 1.220 23 H -0.215 1.215 24 H -0.200 1.200 25 C -0.103 4.103 26 C -0.149 4.149 27 C -0.156 4.156 28 C -0.153 4.153 29 C -0.153 4.153 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.249 0.751 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.061 0.939 42 H 0.026 0.974 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.085 0.915 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.974 7.185 3.789 12.104 hybrid contribution 0.247 -1.814 0.556 1.913 sum -8.727 5.372 4.345 11.131 Atomic orbital electron populations 1.21682 0.91605 1.03355 1.02971 1.22746 0.97434 0.83266 0.99648 1.87920 1.19002 1.27143 1.93509 1.21918 0.83729 1.01034 0.90994 0.90080 1.21539 0.82540 0.76222 0.92114 1.90608 1.49881 1.51944 1.53667 1.46057 1.07050 1.71260 1.10021 1.21087 0.93972 1.00482 0.82596 1.21539 0.91960 0.89073 0.95324 0.94361 1.22982 0.81712 1.02459 0.94940 1.87806 1.23377 1.32953 1.87407 1.23224 0.99853 0.83872 0.96285 1.21235 0.84519 1.00113 0.91687 1.44269 1.07052 1.15199 1.66501 1.19225 0.92986 1.12978 1.11998 0.91734 1.25599 0.97534 1.02011 0.97434 1.70081 1.16074 1.39681 1.31055 0.85710 0.78986 0.80848 0.77598 1.21972 1.21540 1.19957 1.22150 1.00000 0.92544 0.95630 1.22453 1.00200 0.94396 0.97895 1.22386 1.02197 0.97439 0.93545 1.22068 1.01881 0.93572 0.97813 1.22137 1.01566 0.98679 0.92897 0.92869 0.89274 0.90810 0.95593 0.92047 0.75142 0.93480 0.90492 0.93415 0.86509 0.87749 0.93940 0.97381 0.91628 0.93961 0.89232 0.92979 0.91726 0.90812 0.91140 0.91317 0.90684 0.91458 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 10.28 71.98 0.74 -2.36 16 2 C 0.05 1.30 6.44 71.98 0.46 1.76 16 3 O -0.36 -11.44 7.69 -129.99 -1.00 -12.44 16 4 C 0.08 2.75 2.26 29.84 0.07 2.81 16 5 H 0.08 2.66 7.77 -2.38 -0.02 2.64 16 6 C 0.49 18.59 6.70 87.65 0.59 19.17 16 7 O -0.58 -25.51 16.51 15.97 0.26 -25.25 16 8 N -0.69 -25.86 3.72 -463.05 -1.72 -27.58 16 9 C 0.14 5.20 4.45 86.38 0.38 5.58 16 10 C 0.13 4.78 3.21 44.97 0.14 4.93 16 11 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 12 C 0.06 1.90 6.29 72.08 0.45 2.35 16 13 O -0.40 -14.44 10.74 -148.98 -1.60 -16.04 16 14 C 0.05 1.67 6.99 72.08 0.50 2.17 16 15 C 0.15 6.71 5.37 86.35 0.46 7.17 16 16 N -0.60 -27.17 3.03 -673.71 -2.04 -29.21 16 17 C -0.24 -11.71 7.01 84.03 0.59 -11.13 16 18 H 0.07 3.22 5.84 -2.91 -0.02 3.21 16 19 C -0.03 -1.45 5.07 84.86 0.43 -1.02 16 20 N -0.92 -49.17 11.15 21.65 0.24 -48.92 16 21 Si 0.94 41.65 29.57 68.60 2.03 43.68 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C -0.08 -2.28 2.71 -9.72 -0.03 -2.30 16 26 C -0.11 -2.93 5.83 32.01 0.19 -2.74 16 27 C -0.12 -2.38 6.84 31.79 0.22 -2.16 16 28 C -0.12 -2.19 6.80 31.32 0.21 -1.97 16 29 C -0.12 -2.60 6.29 31.32 0.20 -2.40 16 30 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 16.00 7.07 -92.71 -0.66 15.34 16 36 H 0.05 1.89 7.58 -2.39 -0.02 1.87 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.07 3.28 6.36 -2.39 -0.02 3.26 16 44 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 45 H 0.09 2.43 7.91 -2.39 -0.02 2.41 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.06 1.90 7.19 -2.39 -0.02 1.89 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.07 1.57 7.27 -2.39 -0.02 1.55 16 53 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -60.78 408.09 2.01 -58.77 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.22 Total: 37.12 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 5.61 Total: 19.87 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.52 Total: -105.72 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -2.34 Total: -53.73 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -60.78 2.01 -58.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724772826.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.923 kcal (2) G-P(sol) polarization free energy of solvation -60.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds