Wall clock time and date at job start Sat Apr 11 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47455 * 2 1 4 4 C 1.42896 * 114.00313 * 180.02562 * 3 2 1 5 5 C 1.53783 * 113.61391 * 247.49580 * 4 3 2 6 6 C 1.53781 * 87.08418 * 220.01694 * 5 4 3 7 7 C 1.52995 * 113.61471 * 139.97861 * 6 5 4 8 8 C 1.50706 * 109.46894 * 87.50803 * 7 6 5 9 9 O 1.21280 * 120.00079 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99834 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99785 * 175.04005 * 10 8 7 12 12 C 1.53003 * 109.49403 * 62.11347 * 11 10 8 13 13 O 1.42895 * 109.47244 * 54.51714 * 12 11 10 14 14 C 1.53033 * 109.50075 * 302.01330 * 11 10 8 15 15 C 1.53046 * 109.53788 * 301.41159 * 14 11 10 16 16 C 1.53188 * 109.31317 * 298.63444 * 15 14 11 17 17 N 1.46931 * 108.77448 * 54.63517 * 16 15 14 18 18 C 1.36940 * 120.63079 * 126.37105 * 17 16 15 19 19 H 1.07995 * 119.99762 * 205.37867 * 18 17 16 20 20 C 1.38808 * 119.99892 * 25.36918 * 18 17 16 21 21 N 1.31611 * 120.00222 * 29.58672 * 20 18 17 22 22 Si 1.86800 * 119.99887 * 209.58291 * 20 18 17 23 23 H 1.48498 * 109.47131 * 94.99160 * 22 20 18 24 24 H 1.48503 * 109.47250 * 214.99273 * 22 20 18 25 25 H 1.48501 * 109.47312 * 334.99352 * 22 20 18 26 26 C 1.46929 * 118.73839 * 306.38878 * 17 16 15 27 27 C 1.53781 * 113.62011 * 149.99743 * 4 3 2 28 28 H 1.08997 * 109.47086 * 300.00510 * 1 2 3 29 29 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46464 * 59.99824 * 1 2 3 31 31 H 1.09003 * 109.46965 * 120.00024 * 2 1 3 32 32 H 1.08997 * 109.47086 * 239.99490 * 2 1 3 33 33 H 1.09002 * 112.85156 * 18.79908 * 4 3 2 34 34 H 1.08998 * 113.61429 * 334.56401 * 5 4 3 35 35 H 1.09009 * 113.61755 * 105.46611 * 5 4 3 36 36 H 1.09002 * 113.61350 * 270.88842 * 6 5 4 37 37 H 1.09004 * 109.46801 * 207.50020 * 7 6 5 38 38 H 1.08997 * 109.47369 * 327.50567 * 7 6 5 39 39 H 0.96998 * 120.00054 * 355.04309 * 10 8 7 40 40 H 1.09001 * 109.47096 * 174.51576 * 12 11 10 41 41 H 1.08998 * 109.47152 * 294.51488 * 12 11 10 42 42 H 0.96707 * 113.99853 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.46027 * 61.43513 * 14 11 10 44 44 H 1.09000 * 109.46104 * 181.39307 * 14 11 10 45 45 H 1.08999 * 109.49557 * 178.67977 * 15 14 11 46 46 H 1.08996 * 109.51976 * 58.60332 * 15 14 11 47 47 H 1.08991 * 109.58899 * 294.84857 * 16 15 14 48 48 H 1.09001 * 109.70366 * 174.48848 * 16 15 14 49 49 H 0.97004 * 120.00380 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.58507 * 293.82065 * 26 17 16 51 51 H 1.08998 * 109.70344 * 173.46560 * 26 17 16 52 52 H 1.08994 * 113.61447 * 254.52843 * 27 4 3 53 53 H 1.09006 * 113.60895 * 25.34753 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 4.0030 2.0461 1.3010 6 6 4.9901 2.8312 0.4212 7 6 5.2316 4.2642 0.8997 8 6 6.3494 4.2746 1.9105 9 8 6.8985 3.2379 2.2181 10 7 6.7389 5.4360 2.4725 11 6 7.7495 5.4338 3.5332 12 6 9.0645 4.8766 2.9844 13 8 9.4471 5.6157 1.8228 14 6 7.2691 4.5608 4.6946 15 6 5.9369 5.0985 5.2222 16 6 6.1365 6.5261 5.7408 17 7 6.7343 7.3382 4.6722 18 6 6.1510 8.5133 4.2795 19 1 6.3168 8.8913 3.2816 20 6 5.3465 9.2183 5.1641 21 7 5.5709 9.1455 6.4589 22 14 3.9454 10.2705 4.5168 23 1 2.6837 9.4879 4.5471 24 1 3.7991 11.4784 5.3682 25 1 4.2393 10.6818 3.1205 26 6 7.9696 6.8653 4.0326 27 6 3.9485 2.7252 -0.7052 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.9279 0.5456 -0.3246 34 1 3.2995 2.6801 1.8406 35 1 4.4823 1.3045 1.9403 36 1 5.9142 2.2918 0.2135 37 1 5.5044 4.8899 0.0499 38 1 4.3225 4.6519 1.3594 39 1 6.3502 6.2733 2.1747 40 1 9.8416 4.9652 3.7436 41 1 8.9324 3.8274 2.7203 42 1 10.2744 5.3165 1.4211 43 1 7.1353 3.5362 4.3476 44 1 8.0102 4.5794 5.4937 45 1 5.5837 4.4625 6.0339 46 1 5.2017 5.1032 4.4175 47 1 6.8015 6.5116 6.6042 48 1 5.1744 6.9507 6.0277 49 1 5.0085 9.6378 7.0772 50 1 8.7842 6.8784 4.7568 51 1 8.2185 7.5117 3.1910 52 1 4.3838 2.5318 -1.6855 53 1 3.2295 3.5444 -0.7153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733586745.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:28 Heat of formation + Delta-G solvation = -97.468435 kcal Electronic energy + Delta-G solvation = -31673.815723 eV Core-core repulsion = 27546.626916 eV Total energy + Delta-G solvation = -4127.188807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.25794 -39.39641 -37.53557 -36.39560 -36.02588 -33.79697 -32.32201 -31.44010 -30.53777 -30.39992 -28.85293 -25.76045 -25.44277 -25.06306 -23.50968 -22.88709 -22.17823 -21.03352 -20.07383 -19.46026 -18.63562 -17.15002 -16.95562 -16.71221 -16.60402 -15.82680 -15.63503 -15.21334 -15.00645 -14.79516 -14.47281 -14.14769 -13.89395 -13.60340 -13.21693 -13.16295 -13.02373 -12.84014 -12.67722 -12.48726 -12.41893 -12.34884 -12.05816 -11.87417 -11.55555 -11.43775 -11.37951 -11.19405 -11.10846 -10.87191 -10.73226 -10.71398 -10.37412 -10.34176 -10.18112 -10.10009 -9.78323 -9.69864 -9.53262 -9.50382 -8.98974 -8.42918 -8.38879 -6.79581 -5.87107 -3.19098 3.11507 3.36727 3.45887 3.46189 3.48964 3.72012 4.45291 4.47939 4.52901 4.54042 4.71940 4.73293 4.85665 4.97385 5.10959 5.11791 5.15326 5.24925 5.36835 5.42476 5.46783 5.58496 5.61237 5.65195 5.67606 5.69426 5.71325 5.74810 5.78057 5.80780 5.87697 5.96123 6.01621 6.05022 6.15828 6.29079 6.38091 6.40018 6.47902 6.63073 6.67416 6.80058 6.86260 7.14111 7.16388 7.28722 7.51531 7.78949 7.87934 8.15652 8.35146 8.75885 9.13180 9.79868 10.36883 11.21182 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003230 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.926898 B = 8665.359183 C =10260.909180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.376 6.376 4 C 0.061 3.939 5 C -0.145 4.145 6 C -0.087 4.087 7 C -0.131 4.131 8 C 0.517 3.483 9 O -0.557 6.557 10 N -0.690 5.690 11 C 0.168 3.832 12 C 0.067 3.933 13 O -0.565 6.565 14 C -0.119 4.119 15 C -0.134 4.134 16 C 0.170 3.830 17 N -0.587 5.587 18 C -0.263 4.263 19 H 0.068 0.932 20 C 0.010 3.990 21 N -0.886 5.886 22 Si 0.889 3.111 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.277 1.277 26 C 0.148 3.852 27 C -0.133 4.133 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.406 0.594 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.369 0.631 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.076 0.924 49 H 0.254 0.746 50 H 0.029 0.971 51 H 0.066 0.934 52 H 0.070 0.930 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -16.256 -12.281 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.295 6.295 4 C 0.003 3.997 5 C -0.183 4.183 6 C -0.106 4.106 7 C -0.171 4.171 8 C 0.304 3.696 9 O -0.436 6.436 10 N -0.339 5.339 11 C 0.079 3.921 12 C -0.012 4.012 13 O -0.368 6.368 14 C -0.158 4.158 15 C -0.173 4.173 16 C 0.044 3.956 17 N -0.309 5.309 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.190 4.190 21 N -0.528 5.528 22 Si 0.718 3.282 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.203 1.203 26 C 0.021 3.979 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.241 0.759 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.214 0.786 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.036 0.964 48 H 0.095 0.905 49 H 0.064 0.936 50 H 0.047 0.953 51 H 0.085 0.915 52 H 0.089 0.911 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.866 -16.371 -11.746 20.235 hybrid contribution -0.222 0.461 -0.311 0.599 sum -2.088 -15.909 -12.057 20.071 Atomic orbital electron populations 1.21751 0.93936 1.02081 1.03164 1.22481 0.95512 0.84285 0.99826 1.87960 1.20949 1.25965 1.94636 1.23697 0.80690 0.97788 0.97518 1.23521 0.97884 1.00117 0.96733 1.22011 0.97561 0.95029 0.95988 1.21631 0.98588 0.98079 0.98828 1.20453 0.83711 0.83690 0.81789 1.90555 1.56858 1.32557 1.63677 1.45800 1.41554 1.09008 1.37556 1.20915 0.85424 0.99097 0.86619 1.22663 0.95734 0.95830 0.87001 1.86508 1.44762 1.61144 1.44436 1.21727 0.98352 0.99434 0.96246 1.22047 0.96128 0.99356 0.99761 1.20737 0.98739 0.86893 0.89257 1.44104 1.23451 1.21732 1.41598 1.19092 1.25343 0.99117 0.95660 0.91448 1.24866 1.01602 0.97516 0.95009 1.70218 1.37420 1.43701 1.01492 0.86485 0.83678 0.79476 0.78521 1.21464 1.21997 1.20250 1.21083 0.89821 0.90588 0.96452 1.23324 0.97929 0.97921 0.97909 0.91777 0.91297 0.91937 0.93459 0.93636 0.89815 0.89347 0.91147 0.88178 0.89073 0.88832 0.75918 0.93858 0.91910 0.78587 0.91071 0.92177 0.93311 0.92644 0.96387 0.90546 0.93649 0.95297 0.91511 0.91123 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.49 6.50 37.16 0.24 0.73 16 3 O -0.38 -4.35 10.35 -35.23 -0.36 -4.72 16 4 C 0.06 0.64 4.31 -25.92 -0.11 0.53 16 5 C -0.14 -1.72 7.46 -25.92 -0.19 -1.91 16 6 C -0.09 -1.00 3.15 -89.81 -0.28 -1.28 16 7 C -0.13 -1.64 5.54 -27.88 -0.15 -1.79 16 8 C 0.52 8.13 7.19 -10.98 -0.08 8.05 16 9 O -0.56 -9.78 12.08 5.56 0.07 -9.72 16 10 N -0.69 -11.58 3.94 -47.49 -0.19 -11.77 16 11 C 0.17 2.95 0.45 -131.70 -0.06 2.89 16 12 C 0.07 1.04 5.66 37.16 0.21 1.25 16 13 O -0.56 -8.35 13.08 -35.23 -0.46 -8.81 16 14 C -0.12 -2.13 4.44 -26.69 -0.12 -2.25 16 15 C -0.13 -2.59 5.93 -26.61 -0.16 -2.75 16 16 C 0.17 3.93 5.45 -3.71 -0.02 3.91 16 17 N -0.59 -13.92 2.91 -172.32 -0.50 -14.43 16 18 C -0.26 -6.88 9.51 -15.06 -0.14 -7.03 16 19 H 0.07 1.74 7.97 -52.49 -0.42 1.32 16 20 C 0.01 0.28 4.57 -17.44 -0.08 0.20 16 21 N -0.89 -25.29 11.88 55.49 0.66 -24.63 16 22 Si 0.89 21.06 29.64 -169.99 -5.04 16.02 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.15 3.03 5.06 -3.71 -0.02 3.01 16 27 C -0.13 -1.34 7.47 -25.92 -0.19 -1.53 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.76 7.87 -51.93 -0.41 0.36 16 34 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 35 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.10 1.23 7.68 -51.93 -0.40 0.83 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.16 7.84 -51.93 -0.41 0.75 16 39 H 0.41 7.00 8.48 -40.82 -0.35 6.66 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 42 H 0.37 3.71 9.12 45.56 0.42 4.13 16 43 H 0.07 1.29 6.24 -51.93 -0.32 0.97 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 1.11 7.48 -51.93 -0.39 0.72 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 1.98 6.26 -51.93 -0.33 1.65 16 49 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 50 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 1.41 7.78 -51.93 -0.40 1.00 16 52 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 53 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 411.38 15.07 6.20 6.20 Total: -1.00 -30.81 411.38 -9.20 -40.01 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -8.80 Total: 10.56 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.78 Total: 1.26 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.03 Total: -50.82 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.76 Total: -23.24 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.04 Total: 16.02 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.81 -9.20 -40.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733586745.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.456 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds