Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47455 * 2 1 4 4 C 1.42896 * 114.00313 * 180.02562 * 3 2 1 5 5 C 1.53783 * 113.61391 * 247.49580 * 4 3 2 6 6 C 1.53781 * 87.08418 * 220.01694 * 5 4 3 7 7 C 1.52995 * 113.61471 * 139.97861 * 6 5 4 8 8 C 1.50706 * 109.46894 * 87.50803 * 7 6 5 9 9 O 1.21280 * 120.00079 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99834 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99785 * 175.04005 * 10 8 7 12 12 C 1.53003 * 109.49403 * 62.11347 * 11 10 8 13 13 O 1.42895 * 109.47244 * 54.51714 * 12 11 10 14 14 C 1.53033 * 109.50075 * 302.01330 * 11 10 8 15 15 C 1.53046 * 109.53788 * 301.41159 * 14 11 10 16 16 C 1.53188 * 109.31317 * 298.63444 * 15 14 11 17 17 N 1.46931 * 108.77448 * 54.63517 * 16 15 14 18 18 C 1.36940 * 120.63079 * 126.37105 * 17 16 15 19 19 H 1.07995 * 119.99762 * 205.37867 * 18 17 16 20 20 C 1.38808 * 119.99892 * 25.36918 * 18 17 16 21 21 N 1.31611 * 120.00222 * 29.58672 * 20 18 17 22 22 Si 1.86800 * 119.99887 * 209.58291 * 20 18 17 23 23 H 1.48498 * 109.47131 * 94.99160 * 22 20 18 24 24 H 1.48503 * 109.47250 * 214.99273 * 22 20 18 25 25 H 1.48501 * 109.47312 * 334.99352 * 22 20 18 26 26 C 1.46929 * 118.73839 * 306.38878 * 17 16 15 27 27 C 1.53781 * 113.62011 * 149.99743 * 4 3 2 28 28 H 1.08997 * 109.47086 * 300.00510 * 1 2 3 29 29 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46464 * 59.99824 * 1 2 3 31 31 H 1.09003 * 109.46965 * 120.00024 * 2 1 3 32 32 H 1.08997 * 109.47086 * 239.99490 * 2 1 3 33 33 H 1.09002 * 112.85156 * 18.79908 * 4 3 2 34 34 H 1.08998 * 113.61429 * 334.56401 * 5 4 3 35 35 H 1.09009 * 113.61755 * 105.46611 * 5 4 3 36 36 H 1.09002 * 113.61350 * 270.88842 * 6 5 4 37 37 H 1.09004 * 109.46801 * 207.50020 * 7 6 5 38 38 H 1.08997 * 109.47369 * 327.50567 * 7 6 5 39 39 H 0.96998 * 120.00054 * 355.04309 * 10 8 7 40 40 H 1.09001 * 109.47096 * 174.51576 * 12 11 10 41 41 H 1.08998 * 109.47152 * 294.51488 * 12 11 10 42 42 H 0.96707 * 113.99853 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.46027 * 61.43513 * 14 11 10 44 44 H 1.09000 * 109.46104 * 181.39307 * 14 11 10 45 45 H 1.08999 * 109.49557 * 178.67977 * 15 14 11 46 46 H 1.08996 * 109.51976 * 58.60332 * 15 14 11 47 47 H 1.08991 * 109.58899 * 294.84857 * 16 15 14 48 48 H 1.09001 * 109.70366 * 174.48848 * 16 15 14 49 49 H 0.97004 * 120.00380 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.58507 * 293.82065 * 26 17 16 51 51 H 1.08998 * 109.70344 * 173.46560 * 26 17 16 52 52 H 1.08994 * 113.61447 * 254.52843 * 27 4 3 53 53 H 1.09006 * 113.60895 * 25.34753 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 4.0030 2.0461 1.3010 6 6 4.9901 2.8312 0.4212 7 6 5.2316 4.2642 0.8997 8 6 6.3494 4.2746 1.9105 9 8 6.8985 3.2379 2.2181 10 7 6.7389 5.4360 2.4725 11 6 7.7495 5.4338 3.5332 12 6 9.0645 4.8766 2.9844 13 8 9.4471 5.6157 1.8228 14 6 7.2691 4.5608 4.6946 15 6 5.9369 5.0985 5.2222 16 6 6.1365 6.5261 5.7408 17 7 6.7343 7.3382 4.6722 18 6 6.1510 8.5133 4.2795 19 1 6.3168 8.8913 3.2816 20 6 5.3465 9.2183 5.1641 21 7 5.5709 9.1455 6.4589 22 14 3.9454 10.2705 4.5168 23 1 2.6837 9.4879 4.5471 24 1 3.7991 11.4784 5.3682 25 1 4.2393 10.6818 3.1205 26 6 7.9696 6.8653 4.0326 27 6 3.9485 2.7252 -0.7052 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.9279 0.5456 -0.3246 34 1 3.2995 2.6801 1.8406 35 1 4.4823 1.3045 1.9403 36 1 5.9142 2.2918 0.2135 37 1 5.5044 4.8899 0.0499 38 1 4.3225 4.6519 1.3594 39 1 6.3502 6.2733 2.1747 40 1 9.8416 4.9652 3.7436 41 1 8.9324 3.8274 2.7203 42 1 10.2744 5.3165 1.4211 43 1 7.1353 3.5362 4.3476 44 1 8.0102 4.5794 5.4937 45 1 5.5837 4.4625 6.0339 46 1 5.2017 5.1032 4.4175 47 1 6.8015 6.5116 6.6042 48 1 5.1744 6.9507 6.0277 49 1 5.0085 9.6378 7.0772 50 1 8.7842 6.8784 4.7568 51 1 8.2185 7.5117 3.1910 52 1 4.3838 2.5318 -1.6855 53 1 3.2295 3.5444 -0.7153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733586745.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -118.162557 kcal Electronic energy + Delta-G solvation = -31674.713088 eV Core-core repulsion = 27546.626916 eV Total energy + Delta-G solvation = -4128.086172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50369 -40.40248 -38.86161 -37.43585 -37.23961 -35.41462 -33.90368 -32.40002 -32.28735 -31.62988 -29.99511 -27.29093 -26.62669 -26.58442 -24.44551 -23.92398 -23.59840 -22.51618 -21.45420 -20.37888 -20.04244 -18.66572 -18.21255 -18.06897 -17.65831 -16.84848 -16.63812 -16.59623 -16.38455 -16.09546 -15.85071 -15.55838 -15.18286 -14.99686 -14.70809 -14.39160 -14.28093 -14.13720 -13.93647 -13.58511 -13.47716 -13.35010 -13.22977 -13.09059 -12.99598 -12.92183 -12.81545 -12.45398 -12.23147 -12.17583 -12.13573 -11.94469 -11.81545 -11.72969 -11.55983 -11.49268 -11.22116 -11.18144 -10.98092 -10.51559 -10.32766 -10.25049 -9.73523 -8.76555 -7.91136 -5.25067 1.47539 1.51572 1.58949 1.87932 2.40025 2.52674 2.82380 3.21368 3.33476 3.56523 3.64451 3.67590 3.85636 3.90442 3.95874 4.06929 4.17910 4.21118 4.23130 4.26261 4.35123 4.37713 4.50546 4.53324 4.59977 4.66641 4.72805 4.75691 4.77505 4.87753 4.88353 4.89854 4.90661 4.93082 4.98480 5.03004 5.05592 5.11189 5.18471 5.25878 5.25947 5.29388 5.45726 5.50238 5.61116 5.71474 5.80812 6.34023 6.39203 6.84321 6.95105 7.11556 7.48198 7.83668 8.37452 9.15752 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.003230 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.926898 B = 8665.359183 C =10260.909180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.397 6.397 4 C 0.064 3.936 5 C -0.151 4.151 6 C -0.083 4.083 7 C -0.126 4.126 8 C 0.515 3.485 9 O -0.574 6.574 10 N -0.694 5.694 11 C 0.172 3.828 12 C 0.077 3.923 13 O -0.577 6.577 14 C -0.112 4.112 15 C -0.120 4.120 16 C 0.178 3.822 17 N -0.598 5.598 18 C -0.262 4.262 19 H 0.071 0.929 20 C -0.041 4.041 21 N -0.924 5.924 22 Si 0.952 3.048 23 H -0.289 1.289 24 H -0.301 1.301 25 H -0.264 1.264 26 C 0.152 3.848 27 C -0.124 4.124 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.391 0.609 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.049 0.951 47 H -0.001 1.001 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.024 0.976 51 H 0.061 0.939 52 H 0.089 0.911 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 -17.476 -14.470 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.317 6.317 4 C 0.006 3.994 5 C -0.188 4.188 6 C -0.102 4.102 7 C -0.166 4.166 8 C 0.304 3.696 9 O -0.455 6.455 10 N -0.343 5.343 11 C 0.083 3.917 12 C -0.002 4.002 13 O -0.384 6.384 14 C -0.151 4.151 15 C -0.159 4.159 16 C 0.052 3.948 17 N -0.320 5.320 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.238 4.238 21 N -0.569 5.569 22 Si 0.780 3.220 23 H -0.216 1.216 24 H -0.228 1.228 25 H -0.189 1.189 26 C 0.026 3.974 27 C -0.161 4.161 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.238 0.762 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.240 0.760 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.017 0.983 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.042 0.958 51 H 0.079 0.921 52 H 0.107 0.893 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.879 -17.616 -13.978 22.566 hybrid contribution -0.143 0.813 0.372 0.905 sum -2.022 -16.803 -13.606 21.715 Atomic orbital electron populations 1.21772 0.93184 1.03274 1.02550 1.22688 0.96229 0.83309 1.00632 1.87935 1.21399 1.27672 1.94680 1.23728 0.80556 0.98667 0.96435 1.23518 0.97990 1.00016 0.97323 1.21948 0.97560 0.94114 0.96562 1.21655 0.97193 0.99239 0.98507 1.20952 0.83963 0.82896 0.81830 1.90545 1.57629 1.32992 1.64357 1.45834 1.41602 1.09354 1.37514 1.20749 0.87082 0.96808 0.87034 1.22457 0.94819 0.95277 0.87677 1.86451 1.46455 1.61296 1.44207 1.21658 0.97456 0.99378 0.96564 1.21863 0.97111 0.97020 0.99923 1.20547 0.96549 0.88823 0.88851 1.44269 1.24718 1.21348 1.41700 1.19390 1.24817 0.99390 0.95565 0.91146 1.25559 1.03679 0.99379 0.95182 1.70324 1.38439 1.45501 1.02601 0.85491 0.80661 0.77537 0.78273 1.21633 1.22841 1.18850 1.21104 0.88301 0.92288 0.95750 1.23253 0.97101 0.97543 0.98196 0.92803 0.89236 0.92102 0.93285 0.92140 0.88239 0.90716 0.92143 0.88648 0.87166 0.88739 0.76239 0.92559 0.92217 0.76043 0.90770 0.91562 0.91852 0.93200 0.98329 0.93681 0.94182 0.95797 0.92096 0.89268 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.77 6.50 71.98 0.47 1.23 16 3 O -0.40 -8.66 10.35 -148.98 -1.54 -10.20 16 4 C 0.06 1.23 4.31 31.12 0.13 1.36 16 5 C -0.15 -3.45 7.46 31.12 0.23 -3.22 16 6 C -0.08 -1.77 3.15 -10.27 -0.03 -1.80 16 7 C -0.13 -2.94 5.54 29.85 0.17 -2.77 16 8 C 0.52 15.47 7.19 87.66 0.63 16.10 16 9 O -0.57 -19.34 12.08 -3.03 -0.04 -19.37 16 10 N -0.69 -22.47 3.94 -422.56 -1.67 -24.13 16 11 C 0.17 5.83 0.45 3.68 0.00 5.83 16 12 C 0.08 2.24 5.66 71.98 0.41 2.65 16 13 O -0.58 -15.77 13.08 -148.98 -1.95 -17.72 16 14 C -0.11 -3.88 4.44 30.62 0.14 -3.74 16 15 C -0.12 -4.61 5.93 30.67 0.18 -4.43 16 16 C 0.18 8.42 5.45 86.36 0.47 8.89 16 17 N -0.60 -28.57 2.91 -699.10 -2.04 -30.60 16 18 C -0.26 -13.74 9.51 84.03 0.80 -12.94 16 19 H 0.07 3.60 7.97 -2.91 -0.02 3.57 16 20 C -0.04 -2.24 4.57 84.86 0.39 -1.85 16 21 N -0.92 -54.05 11.88 21.65 0.26 -53.79 16 22 Si 0.95 43.79 29.64 68.60 2.03 45.82 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.15 6.15 5.06 86.36 0.44 6.59 16 27 C -0.12 -2.20 7.47 31.12 0.23 -1.97 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.10 1.59 7.87 -2.39 -0.02 1.57 16 34 H 0.07 1.90 7.90 -2.39 -0.02 1.88 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.10 2.16 7.68 -2.39 -0.02 2.15 16 37 H 0.11 2.15 8.14 -2.38 -0.02 2.14 16 38 H 0.09 2.22 7.84 -2.39 -0.02 2.20 16 39 H 0.40 13.49 8.48 -92.71 -0.79 12.71 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.81 6.33 -2.39 -0.02 1.80 16 42 H 0.39 6.84 9.12 -74.05 -0.68 6.16 16 43 H 0.07 2.58 6.24 -2.39 -0.01 2.56 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.05 1.97 7.48 -2.39 -0.02 1.95 16 47 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.04 2.40 6.26 -2.39 -0.01 2.39 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 50 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.06 2.53 7.78 -2.39 -0.02 2.51 16 52 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.09 1.66 8.10 -2.38 -0.02 1.64 16 Total: -1.00 -65.99 411.38 -0.11 -66.10 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.56 Total: 35.29 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.39 Total: 8.61 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.44 Total: -108.53 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -3.53 Total: -47.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.99 -0.11 -66.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733586745.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.060 kcal (2) G-P(sol) polarization free energy of solvation -65.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds